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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 668 fasta sequence
[CCTCCGAGGCCAANAATTCGGCACGAGGTTAATTTACGTTTTATATTTCATTGCTAATGCAAAGTTTGAACATACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTTTACAATAAAGTATCAA]
[+] EMBL CD081360 [CCTCCGAGGCCAANAATTCGGCACGAGGTTAATTTACGTTTTATATTTCATTGCTAATGCAAAGTTTGAACATACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTAGTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTANACAATGTTAGTTTTACAATAAAGTATCA ]
[+] EMBL CD077848 [ CTCGCAGG CAAGAATTCGGTCCGAGGTTAATTTACGTTTTATATTTCATTGCTAATGCAAAGTTTGAACATACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGT GTACAATTGTCAATGGAACAAA ]
[+] EMBL CD082368 [ cacATATTTCATTGCTAATGCAAAGTTTGAACCTACAACATCAGGAATCAGCAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTGCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTNTACAATAAAGTATCA ]
[+] EMBL CD082358 [ ATATTTCATTGCTTATGCAAAGTTTGAACCTTCAACATCAGGAATCAGCAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTGCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTNTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTNTACAATANAGTATCA ]
[+] EMBL SMAA18485 [ AAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGTAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAG GTAACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAACTCATAAGNGTTATTTATTCAATTTCTGGNACCTTTTCAGAACATCATTCTTGAATTTAAA ]
[-] EMBL CD075194 [ ATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACCCCACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATTTCACAACTTTACAGTAGCTCCCTTTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAAAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTTTGGTCCCTTTTCAGAACATCATTTTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTTTCCAATAAAGTATCAA]
[-] EMBL CD075971 [ CACACCACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTGCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTTTACAATAAAGTATCAA]
[-] EMBL CD075959 [ ACAGAAATCAAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAAAGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTGCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTTTACAATAAAGTATCAA]
[+] EMBL CD084119 [ cgaGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTTTACAATAAAGTATCA ]
consensusID : consensus_9867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 604 fasta sequence
[TTCACGAAACCTATCTTAATTTACGTTTTATATTTCATTGTTTATGCAAAGTTTGAACACACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGTAAAGGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTAC-TGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTNTACAATAAAGTATCAA]
[+] EMBL CD082303 [TTCACGAAACCTATCTTAATTTACGTTTTATATTTCATTGTTTATGCAAAGTTTGAACACACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGTAAAGGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTAC TGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTNTACAATAAAGTATCA ]
[-] EMBL CD075905 [ tTATCTTAATTTACGTTTTATATTTCATTGCTAATGCAAAGTTTGAACATACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGCTTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATCAAATAATGGGACTTCATGCAACGGTAAAGGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTTGAATTTAAAGAATATGAAAAACTTATTAC TGGGAAGTTAAATCTTTTACTGTCAGTCTTTTTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTTTACAATAAAGTATCAA]
[+] EMBL CD181901 [ TCACAACTCTACAGTAGCTCCCTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGAGTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCATCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAG ACATCATTCTTGAATTTAAAGAATATGAAAAAC TATTACNTGGGAAGTTAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9867#0 CCTCCGAGGCCAANAATTCGGCACGAGGTTAATTTACGTTTTATATTTCATTGCTAATGC 60
consensus_9867#1 --------TTCACGAAACCT-----ATCTTAATTTACGTTTTATATTTCATTGTTTATGC 47
** ** * * ************************* * ****
consensus_9867#0 AAAGTTTGAACATACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGC 120
consensus_9867#1 AAAGTTTGAACACACAACATCAGGAATCAGGAATCCAAGTAAATTATCAGACTCCAATGC 107
************ ***********************************************
consensus_9867#0 TTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATC 180
consensus_9867#1 TTCAAAGACATTAAGCTTGAAAAATTTAACAGATCATTATATCCACACACCACAGAAATC 167
************************************************************
consensus_9867#0 AAATAATGGGACTTCATGCAACGGCAAAGATACATGTAAACTTCCAAACCCAAGTCAAAA 240
consensus_9867#1 AAATAATGGGACTTCATGCAACGGTAAAG------------------------------- 196
************************ ****
consensus_9867#0 AGGTTTTACGAACACTACGAGTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCC 300
consensus_9867#1 --------------------GTTTACCTCATACGCAATCTCACAACTCTACAGTAGCTCC 236
****************************************
consensus_9867#0 CTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAAC 360
consensus_9867#1 CTCTGTTCCAAAGCCAACACGCCAGGAAATCCCACGAAGTGGTACAATTGTCAATGGAAC 296
************************************************************
consensus_9867#0 AAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGA 420
consensus_9867#1 AAAACCAACGCCTGGTAAACCTGTTGTCAATGGAACAAAACCAACGCCTGGTAAACCTGA 356
************************************************************
consensus_9867#0 GTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCA 480
consensus_9867#1 GTCATTCCTGAAAAGAGTTGGCGATGGATTTTTCGATTTGTTCAGTGAACAAGAGTTCCA 416
************************************************************
consensus_9867#0 TCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTT 540
consensus_9867#1 TCCAATAAATCATAAGAGTTATTTATTCAATTTCTGGTACCTTTTCAGAACATCATTCTT 476
************************************************************
consensus_9867#0 GAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTT 600
consensus_9867#1 GAATTTAAAGAATATGAAAAACTTATTACTGGGAAGTTAAATCTTTTACTGTCAGTCTTT 536
************************************************************
consensus_9867#0 TTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTTTACAATAA 660
consensus_9867#1 TTGAACATTCAGAAAGATATACACTGGAATATTCACTAAACAATGTTAGTTNTACAATAA 596
*************************************************** ********
consensus_9867#0 AGTATCAA 668
consensus_9867#1 AGTATCAA 604
********
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||