These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 549 fasta sequence [AATAAGCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT-CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA-GT-TGTGTTCC-TTGAATTA-GGACAAGGACTA] [-] EMBL CD146458 [AATAAGCACTGATCTACTTCTTGTGGATCTTCATCCAGTACTTCTTCGCTAATTTGATAACTAGACGATTCATTTTCACCAATCATCATGTGCATG TACAATCTAAATGAGCTCTGAGTTGTTCAGCTATATCCATGGCAAGTTTTAATTCTATAAACAATATACTCCGGCTCTATGAAGTAGAATCATTCTGAGCTTCTTTAGAACAACATGAGAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTATGGAAATGAGTTTATATAACTTGTCCGAAAACTCAACCGCAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCGAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTCTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTA GGACAAGG ] [+] EMBL CD146526 [ GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTTGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGGATTA GGACANGGACTA] [+] EMBL CD146513 [ GCACTGATCTTCTTCTTGTGGATCTTCATCCGGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCGCCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAACTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGNGAATTTCTGAAGTTTGGAAAATCCANAGGAGCTGTCTNTACACTTGATTTAATGGTNCGG TCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGGTCCTTTGAATTA GGACCAG ] [+] EMBL CD146528 [ GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTANNGACAg ] [+] EMBL CD146553 [ GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTTGATTANNGACAg ] [+] EMBL CD146552 [ GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAACTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GTNTGTG TCC TTGAATTA NGACAng ] [+] EMBL CD146520 [ GCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGG ATTAACAGAATGATCATGANGTAAATGTTCTTCTTGTTCANGT TGTG TCC TTGAATTA GGACAng ] [-] EMBL CD146438 [ CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTANATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTA GGACAAGG ] [+] EMBL CD161452 [ TACAATTTAAATTAGCTTTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCAAAAAATTCAACCACAATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGT CGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCA GT TGTGTTCC TTGAATTA GGACAAG ] consensusID : consensus_9869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGANAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTNTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGAGCTATCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGGACAAGG] [-] EMBL CD146430 [CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGANAACTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTNTGAGTTGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAATTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGTGCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACAATATTGCTGAGCTATCATCAAATTTCTCAGTTAGACCGTCTACCATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGGACAAGG] [-] EMBL CD161495 [ ATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTTTGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGAATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGGACAAGG] consensusID : consensus_9869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [TGATGATTGGTGAAAATGAATCTGCTAGTNANCANATTGGCGGAGAAGTACTGGATGAAGATCCACAAGAAGAAGATCAGCGCTTATTAATGTGACGGGAGAGAGANTTCTCTAACCTATTTTTATGTNGTTTGCTGANANCTCCCAATGTGTACACTAAAAAAANGCTNGATANTCTATCAAGNGATCGTGATATCGNGTATGTNTATTAGCNGANCATNTATCTCATTTCCTCCNGNCTTNTATGTTNACTGTCCATNTTACATNTANTCGCTAGCTCCTATTCTGGCTGANCGTTCGCGATNCTTACAAACACTTCATACATNGATCATCTTATCTTTTNNTCGAAAACACGTCCTNCCCA] [+] EMBL SM793 [TGATGATTGGTGAAAATGAATCTGCTAGTNANCANATTGGCGGAGAAGTACTGGATGAAGATCCACAAGAAGAAGATCAGCGCTTATTAATGTGACGGGAGAGAGANTTCTCTAACCTATTTTTATGTNGTTTGCTGANANCTCCCAATGTGTACACTAAAAAAANGCTNGATANTCTATCAAGNGATCGTGATATCGNGTATGTNTATTAGCNGANCATNTATCTCATTTCCTCCNGNCTTNTATGTTNACTGTCCATNTTACATNTANTCGCTAGCTCCTATTCTGGCTGANCGTTCGCGATNCTTACAAACACTTCATACATNGATCATCTTATCTTTTNNTCGAAAACACGTCCTNCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9869#0 AATAAGCACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGAAAA 60 consensus_9869#1 ------CACTGATCTTCTTCTTGTGGATCTTCATCCAGTACTTCTTCGCCAATTTGANAA 54 consensus_9869#2 ------------------------------------------------------------ consensus_9869#0 CTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTTTGAGT 120 consensus_9869#1 CTAGAAGATTCATTTTCACCAATCATCATTTTACTGTTACAATTTAAATTAGCTNTGAGT 114 consensus_9869#2 ------------------------------------------------------------ consensus_9869#0 TGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAA 180 consensus_9869#1 TGTTCAGCTTTATCCATGGCAAGATTTAATTCTTTAAACAATATACTCCGGCTCTTTGAA 174 consensus_9869#2 ---------TGATGATTGGTGAAAATGAATCTGCTAGTNANCANATT--GGC-----GGA 44 * ** *** * * * *** ** * * * * *** * * consensus_9869#0 TTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGT 240 consensus_9869#1 TTAGAATCATTCTGAGCTTCTTTTAAACAACATGAAAATTCGTTTTGAAAGTAAGTCAGT 234 consensus_9869#2 GAAGTACTGGATGAAGATCCACAAGAAGAAGATCAGCGCTTATTAATGTGACGGGAGAGA 104 ** * ** * * ** ** ** * * ** * ** consensus_9869#0 GCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACA 300 consensus_9869#1 GCTTCTTGTAAACGATGTTTGGAAATGAGTTTATAAAACTTGTCCAAAAATTCAACCACA 294 consensus_9869#2 GANTTCTCTAACCTATTTTT--ATGTNGTTTGCTGANANCT-CCCAATGTGTACACTAAA 161 * * * *** * ** *** * * ** * * * * **** * ** * * consensus_9869#0 ATATTGCTGGAGCTATCCAGTTCTAAAAGTCGACTACCATCAAATTTCTCAGTTAGACCG 360 consensus_9869#1 ATATTGCTGAG----------------------CTATCATCAAATTTCTCAGTTAGACCG 332 consensus_9869#2 AAAANGCTNGAT---------------------ANTCTATCAAGNGATC--GTGATATCG 198 * * *** ***** ** * * ** consensus_9869#0 TCTAC-CATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTT 419 consensus_9869#1 TCTAC-CATATCCATCGAATCGACATTCGGTCCAGATTCTAATTGGGAATTTCTGAAGTT 391 consensus_9869#2 NGTATGTNTATTAGCNGANCATNTATCTCATTTC--CTCCNGNCTTNTATGTTNACTGTC 256 ** *** ** ** * ** ** * ** consensus_9869#0 TGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGA 479 consensus_9869#1 TGGAGAATCCAAAGGAGCTGTCTTTACACTTGATTTAATGGTCGGTTCAATTGTGGAGGA 451 consensus_9869#2 CATNTTACATNTANTCGCTAGCTCCTATTCTGGCTGANCGTTCGCGATNCTTACA-AACA 315 * * *** ** ** * * * *** ** * * consensus_9869#0 ATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGG 539 consensus_9869#1 ATTAACAGAATGATCATGAGTTAAATGTTCTTCTTGTTCAGTTGTGTTCCTTGAATTAGG 511 consensus_9869#2 CTTCATACATNGATCAT----CTTATCTTTTNNTCGAAAACACGTCCTNCCCA------- 364 ** * * * ****** ** ** * * * * ** * * consensus_9869#0 ACAAGGACTA 549 consensus_9869#1 ACAAGG---- 517 consensus_9869#2 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||