These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1311 fasta sequence [ACATATTTATTATTAGGACTAGGATGTGAGGAGCGCAAAGGCTTCGTGGGTGTGAATAAACATATGTTAAATAGAACGCTGAAATAATAGAAAATATGGTAATGAATAGGAAATCAAAACATAAAACTTAGGCACAATCATCCAATCAGTGCAAGTATACAAAATACAACTAGTTACATAATGACATAAGCTTTACTCCGAGTTTTTCCATAAAATATACAATACACAGCTCATATGTACATATTACGTGATACATGAAAGATAGACAAATGGAAAATTACTACCAAAGTATCTATATCTCTAATAATATAATGAATATGTAAACAGTCACACATACACATGCAAAACATGGATTATGTGACAAGTGCTATTTCATTAAAAGTTCAATAGAAACCATATCTATTATTTTATTAGCGAGTGTCAATATGTATTCACAATTTTAAAGTCAATGATAATTAGATATCTAGAATCGAAGTAGTAAAATGCTGTGTTTAGAAAGAGGACAGTTTTTGTTTAGACAAAACATAGAGAAGCGTAGAAATGAGAGCAGGAGAAAATCACTGTGATAAGAAAAACCAATGAACAAAGGAATGGTCAACGCTATTGTTGTATGAATGAAATCAAGTTCCACCTTTGCACTGAGTTTAGGTAGAATGGGATATATATAGAGATAGATGGATAAATAAATAAAGATTCTTTGATGGAGTATATAGTTGATTTTTACAGAGAAAAAAAAATGTCAC-AACCAAAAGAGAAACATACATATTGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGTGATATTCCTCTCATGTGTTTGTTGATGTTGTTGTGAAATCAATGCCTGCTTTATTTCTTCTAAACAAGCTGGTGGACTGCAGATTCCATATTTTCGTCTGGCTAGAACACGATGTTGC] [+] EMBL CD074827 [ACATATTTATTATTAGGACTAGGATGTGAGGAGCGCAAAGGCTTCGTGGGTGTGAATAAACATATGTTAAATAGAACGCTGAAATAATAGAAAATATGGTAATGAATAGGAAATCAAAACATAAAACTTAGGCACAATCATCCAATCAGTGCAAGTATACAAAATACAACTAGTTACATAATGACATAAGCTTTACTCCGAGTTTTTCCATAAAATATACAATACACAGCTCATATGTACATATTACGTGATACATGAAAGATAGACAAATGGAAAATTACTACCAAAGTATCTATATCTCTAATAATATAATGAATATGTAAACAGTCACACATACACATGCAAAACATGGATTATGTGACAAGTGCTATTTCATTAAAAGTTCAATAGAAACCATATCTATTATTTTATTAGCGAGTGTCAATATGTATTCACAATTTTAAAGTCAATGATAATTAGATATCTAGAATCGAAGTAGTAAAATGCTGTGTTTAGAAAGAGGACAGTTTTTGTTTAGACAAAACATAGAGAAGCGTAGAAATGAGAGCAGGAGAAAATCACTGTGATAAGAAAAACCAATGAACAAAGGAATGGTCAACGCTATTGTTGTATGAATGAAATCAAGTTCCACCTTTGCACTGAGTTTAGGTAGAATGG ] [-] EMBL CD125909 [ AGCAGGAGAAAATCACTGTGATAAGAAAAACCAATGAACAAAGGAATGGTCAACGCTATTGTTGTATGAATGAAATCAAGTTCCACCTTTGCACTGAGTTTAGGTAGAATGGGATATATATAGAGATAGATGGATAAATAAATAAAGATTCTTTGATGGAGTATATAGTTGATTTTTACAGAGAAAAAAAAATGTCAC AACCAAAAGAGAAACATACATATTGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGG ] [+] EMBL CD096009 [ GATAAGAAAAACCAATGAACAAAGGAATGGTCAACGCTATTGTTGTATGAATGAAATCAAGTTCCACCTTTGCACTGAGTTTAGGTAGAATGGGATATATATAGAGATAGATGGATAAATAAATAAAGATTCTTTGATGGAGTATATAGTTGATTTTTACAGAGAAAAAAAAATGTCACAAACCAAAAGAGAAACATACATATTGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATGGATGAATAAGGTTTAATGATCATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTGNTGCCTTTTA ] [-] EMBL CD140517 [ ACATATTGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTACCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGT ] [+] EMBL CD196909 [ TATTGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTAT ] [-] EMBL CD140525 [ ATTGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATGAATGAATAAGGTTTAATGATGATGGCGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACGAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGT ] [-] EMBL CD140356 [ ATGGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATAAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAGTACAATCAATCCAACTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGT ] [-] EMBL CD196898 [ ATTGCAAAAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGT ] [-] EMBL CD196814 [ AAATAACGAGAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACTATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGT ] [+] EMBL CD200792 [ ctagtgatTATTGTCGATGAAAAAACGAAAATTTGTAGCGATTTTATTGTGTACATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGTGATATTCCTCTCATGTGTTTGTTGATGTTGTTGTGAAATCAATGCCTGCTTTATTTCTTCTAAACAAGCTGGTGGACTGCAGATTCCATATTTTCGTCTGGCTAGAACACGATGTTGC] consensusID : consensus_9870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [AAGCAATGAAGTTAAATGATAACGATGGAGGGGATATTTATTATGTCGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAANNNNNNNNNNNNNNNNNNNNNNNGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTAATCATCATCATCTGTGATATTCCTCTCATGTGTTTGTTGATGTTGTTGTGAAATCAATGCCTGCTTTATTTCTTCTAAACAAGCTGGTGGACTGCAGATTCCATATTTTCGTCTGGCTAGANNNNNNNNNNNNNNNNNNNNNNCCAGTAACATTACCAGTACCACCACTGACAATTCTTAGTTCATCCTCTATAGGCCTATAAGACTGAAGCTGTAAAAACACAAAATGAACAAAAATATGATATTATCTTACCCCTC] [-] EMBL CD081001 [AAGCAATGAAGTTAAATGATAACGATGGAGGGGATATTTATTATGTCGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGGGATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAANNNNNNNNNNNNNNNNNNNNNNNGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACAATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAACATGTTAGGTACTAATCATCATCATCTGTGATATTCCTCTCATGTGTTTGTTGATGTTGTTGTGAAATCAATGCCTGCTTTATTTCTTCTAAACAAGCTGGTGGACTGCAGATTCCATATTTTCGTCTGGCTAGANNNNNNNNNNNNNNNNNNNNNNCCAGTAACATTACCAGTACCACCACTGACAATTCTTAGTTCATCCTCTATAGGCCTATAAGACTGAAGCTGTAAAAACACAAAATGAACAAAAATATGATATTATCTTACCCCTC] consensusID : consensus_9870#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [AGACTGGAAAACCCTGGCGGGAAAGACTATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAANTTTAGAGAACAAGGGATGGGGTGGGCGATATAACTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTNTTGATACAAATATTGTGAACAAATAAAAT] [+] EMBL CD059323 [AGACTGGAAAACCCTGGCGGGAAAGACTATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTCTACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAANTTTAGAGAACAAGGGATGGGGTGGGCGATATAACTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTTTATTGTGTTCATTGATTACTCCCACTTNTTGATACAAATATTGTGAACAAATAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9870#0 ACATATTTATTATTAGGACTAGGATGTGAGGAGCGCAAAGGCTTCGTGGGTGTGAATAAA 60 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 CATATGTTAAATAGAACGCTGAAATAATAGAAAATATGGTAATGAATAGGAAATCAAAAC 120 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 ATAAAACTTAGGCACAATCATCCAATCAGTGCAAGTATACAAAATACAACTAGTTACATA 180 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 ATGACATAAGCTTTACTCCGAGTTTTTCCATAAAATATACAATACACAGCTCATATGTAC 240 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 ATATTACGTGATACATGAAAGATAGACAAATGGAAAATTACTACCAAAGTATCTATATCT 300 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 CTAATAATATAATGAATATGTAAACAGTCACACATACACATGCAAAACATGGATTATGTG 360 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 ACAAGTGCTATTTCATTAAAAGTTCAATAGAAACCATATCTATTATTTTATTAGCGAGTG 420 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 TCAATATGTATTCACAATTTTAAAGTCAATGATAATTAGATATCTAGAATCGAAGTAGTA 480 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 AAATGCTGTGTTTAGAAAGAGGACAGTTTTTGTTTAGACAAAACATAGAGAAGCGTAGAA 540 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 ATGAGAGCAGGAGAAAATCACTGTGATAAGAAAAACCAATGAACAAAGGAATGGTCAACG 600 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 CTATTGTTGTATGAATGAAATCAAGTTCCACCTTTGCACTGAGTTTAGGTAGAATGGGAT 660 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 ATATATAGAGATAGATGGATAAATAAATAAAGATTCTTTGATGGAGTATATAGTTGATTT 720 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 TTACAGAGAAAAAAAAATGTCACAACCAAAAGAGAAACATACATATTGCAAAAATAACGA 780 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ------------------------------------------------------------ consensus_9870#0 GAAAAGCAATGAAGTTAAATGATAACGATTGGAGGGATTATTATTATGTCGCGAAAGACT 840 consensus_9870#2 --------------------------------AGACTGGAAAACCCTGGCGGGAAAGACT 28 consensus_9870#1 --------------------------------AAGCAATGAAGTTA-AATGATAACGATG 27 * * ** ** consensus_9870#0 ATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTC 900 consensus_9870#2 ATGAATGAATAAGGTTTAATGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTC 88 consensus_9870#1 GAGGGGATATTTATTATGTCGATGATGGTGTATGTTGTGTTGTGGGTTTTTATATCTGTC 87 * ** * * **************************************** consensus_9870#0 TACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGG 960 consensus_9870#2 TACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAANTTTAGAGAACAAGG 148 consensus_9870#1 TACATATTTGCCTTGCATTCATTCCATAATGTGGGAAAAATACAATTTTAGAGAACAAGG 147 ********************************************* ************** consensus_9870#0 GATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTT 1020 consensus_9870#2 GATGGGGTGGGCGATATAACTACATATTGTCGATGAAAAAACGAGAATTTGTAGCGATTT 208 consensus_9870#1 GATGGGGTGGGCGATATAATTACATATTGTCGATGAAAAAANNNNNNNNNNNNNNNNNNN 207 ******************* ********************* consensus_9870#0 TATTGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACA 1080 consensus_9870#2 TATTGTGTTCATTGATTACTCCCACTTNTTGATACAAATATTGTGAACAAATAAAAT--- 265 consensus_9870#1 NNNNGTGTTCATTGATTACTCCCACTTTTTGATACAAATATTGTGAACAAATAAAATACA 267 *********************** ***************************** consensus_9870#0 ATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAA 1140 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 ATCAATCCATCTCACTATTATTATTGCCTTTTAATTTCTTTAAAAAGGAATACGCATAAA 327 consensus_9870#0 CATGTTAGGTACTATTTCACTATCAATAATCATGGTTAATCATCATCATCTGTGATATTC 1200 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 CATGTTAGGTACTA------------------------ATCATCATCATCTGTGATATTC 363 consensus_9870#0 CTCTCATGTGTTTGTTGATGTTGTTGTGAAATCAATGCCTGCTTTATTTCTTCTAAACAA 1260 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 CTCTCATGTGTTTGTTGATGTTGTTGTGAAATCAATGCCTGCTTTATTTCTTCTAAACAA 423 consensus_9870#0 GCTGGTGGACTGCAGATTCCATATTTTCGTCTGGCTAGAACACGATGTTGC--------- 1311 consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 GCTGGTGGACTGCAGATTCCATATTTTCGTCTGGCTAGANNNNNNNNNNNNNNNNNNNNN 483 consensus_9870#0 ------------------------------------------------------------ consensus_9870#2 ------------------------------------------------------------ consensus_9870#1 NCCAGTAACATTACCAGTACCACCACTGACAATTCTTAGTTCATCCTCTATAGGCCTATA 543 consensus_9870#0 -------------------------------------------------------- consensus_9870#2 -------------------------------------------------------- consensus_9870#1 AGACTGAAGCTGTAAAAACACAAAATGAACAAAAATATGATATTATCTTACCCCTC 599 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||