These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1026 fasta sequence [GGCGCGTGAACGTTTCATGGGTCGAAAGCTGACAGTAGTCCCTCTAAGGACTTGGTTAGTATATTGGCTTTCCTTCAACGCTGGGAGTGTTGTACTGTAGAAATGACGGATGTAGTAGAAGCTCGAAGATGTCTTGGGTGTCGTGTTACATTCGAGACAGATGACGAATTTTGGCATCATATATTAAATGTGGATTGTAGTAGTTCGATAAGCTCACCGAGTTTGAGTAAAGATGTATCTTTACCTTG-TTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTTCATCTGAT-AAAATACCAGTAATGTCGNTCCTCAGTTTCGTACTGATGATGGGCACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAATACTATCCTTTTATTGGATGTAAACGGGGATTCATCGCACACTTAAAAGCATTTGTACCATTCCCATCAAATTTTTTTTAAAAAAAAAATTCCTTTATTTCCCAACATTTGTACCAAAATCCCCCTTACTTCCAATTTTACCATTTTTTTTTCAAAAAAACCAAAACTAANTCTTGAGTTTCTTCGGGCATTCAAAACNTATCATTATTTTTAAAACCCTTCTTGAAATTTTTCCTTTAACTTGTTTCA] [+] EMBL CD080125 [GGCGCGTGAACGTTTCATGGGTCGAAAGCTGACAGTAGTCCCTCTAAGGACTTGGTTAGTATATTGGCTTTCCTTCAACGCTGGGAGTGTTGTACTGTAGAAATGACGGATGTAGTAGAAGCTCGAAGATGTCTTGGGTGTCGTGTTACATTCGAGACAGATGACGAATTTTGGCATCATATATTAAATGTGGATTGTAGTAGTTCGATAAGCTCACCGAGTTTGAGTAAAGATGTATCTTTACCTTG TTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTANANAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTTCATCTGAT AAAATACCAGTAATGTCGNTCCTCAGTTTCGTACTGATGATGGGCACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAATACTATCCTTTTATTGGATGTAAACGGGGATTCATCGCACACTTAAAAGCATTTGTACCATTCCCATCAAATTTTTTTTAAAAAAAAAATTCCTTTATTTCCCAACATTTGTACCAAAATCCCCCTTACTTCCAATTTTACCATTTTTTTTTCAAAAAAACCAAAACTAANTCTTGAGTTTCTTCGGGCATTCAAAACNTATCATTATTTTTAAAACCCTTCTTGAAATTTTTCCTTTAACTTGTTTCA] [+] EMBL CD084215 [ gagGAGTTTGAGTAAAGATGTATCTTTACCTTGTTTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTCATCAAGAAGTTTTAG ] [+] EMBL CD181124 [ GACTGTTAAAAAGTACGGCAACAGATGATTTGTGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGT ] [+] EMBL CD083567 [ AAAAGTACGGCAACAGATGATTTG GTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCAC TCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACT ] consensusID : consensus_9874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 869 fasta sequence [CTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG-AAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCAG-ACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGTGTCAATTTCAGTACAATCGTTTATCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGAAATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATTTTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGCTACTAATTATTTATTTCCATT] [+] EMBL CD084304 [CTCGAACATTTTTCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGATGTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAAT ] [+] EMBL CD187702 [ CACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTCGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACCGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAACACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAGATACTATCACTTTTATCGAGTGTAAACGGTGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAGAAGAGAAAGATCTACTTTGATTGACGAGAACAGTATGTAAAGAAAGAATTACGCGCTATACTTCCACAGTCTTTACAACATG ] [+] EMBL CD187721 [ CACGCTTGTTTTGCGATATTTGCCAAATAAATTTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAACACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGNGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTT ] [+] EMBL CD179562 [ ATCTTGCTGGTAAGAAGCATAATAAGATGTGTGGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGGCCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCTATGAGTTCCGACAATTCTCACTCATCTGATAAAAATACCACCCATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCCACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG AAGAATTACGCGCTATACTTCCTCAGCCTTTACAACATGTTATTTCTTCTCAG ACAA ] [+] EMBL CD089996 [ GTTCCGACAATTCTCACTCATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG AAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCAG ACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGTGTCAATTTCAGTACAATCGTTTATCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGAAATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATTTTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGCTACTAATTATTTATTTCCAT ] [-] EMBL CD089952 [ TTCCGACAATTTTCACTCATGTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTAATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTNTGACGCAAATACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACTCGTAGAAAGCAGTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGTATGTAAAG AAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCAG ACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGTGTCAATTTCAGTACAATCGTTTATCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGAAATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATTTTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGCTACTAATTATTTATTTCCATT] [+] EMBL AI395859 [ CTGATAAAAATACCAGTAATGTCGTTCCTCAGTTTCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAATA ] [+] EMBL AI395866 [ GTTGTAACAATGCACAGTCAAAATATTCTTTAAAAGAG AAGATCTACTTGAATTGACGAGAACAGTATGTAAAG ATGAATTACGCGCTATACTTCCACAGTCTTTACAACATGTTATTTCTCCTCAGCAC AAAAACGCCAATGACTAAAGTTGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9874#0 GGCGCGTGAACGTTTCATGGGTCGAAAGCTGACAGTAGTCCCTCTAAGGACTTGGTTAGT 60 consensus_9874#1 ------------------------------------------------------------ consensus_9874#0 ATATTGGCTTTCCTTCAACGCTGGGAGTGTTGTACTGTAGAAATGACGGATGTAGTAGAA 120 consensus_9874#1 ------------------------------------------------------------ consensus_9874#0 GCTCGAAGATGTCTTGGGTGTCGTGTTACATTCGAGACAGATGACGAATTTTGGCATCAT 180 consensus_9874#1 ------------------------------------------------------------ consensus_9874#0 ATATTAAATGTGGATTGTAGTAGTTCGATAAGCTCACCGAGTTTGAGTAAAGATGTATCT 240 consensus_9874#1 ------------------------------------------------------------ consensus_9874#0 TTACCTTGTTCAAGCCAAAATGATAATAGACTGTTAAAAAGTACGGCAACAGATGATTTG 300 consensus_9874#1 ------------------------------------------------------------ consensus_9874#0 TGTTTTTGTGGTCTGTGTGACAAATGGTTTGCATCAAAGCCACAGTTCCTCGAACATTTT 360 consensus_9874#1 ------------------------------------------------CTCGAACATTTT 12 ************ consensus_9874#0 TCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGAT 420 consensus_9874#1 TCATCCGTAGAACATGAGCAGAAATCCAAATTAACTGCCAAAGTTCCTTCTAATGACGAT 72 ************************************************************ consensus_9874#0 GTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAAT 480 consensus_9874#1 GTCGGTACAGTTAGCGAGAATATTCAGTCACGCTTGTTTTGCGATATTTGCCAAATAAAT 132 ************************************************************ consensus_9874#0 TTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGT 540 consensus_9874#1 TTGTCGTCTGTTCAAGCCAAAGAGGCTCATCTTGCTGGTAAGAAGCATAATAAGATGTGT 192 ************************************************************ consensus_9874#0 GGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGG 600 consensus_9874#1 GGTCGTCAGTTGAGCTCCGTAAACACACAAAGGGAATCGCATGTCACTCTAGAAAAGGGG 252 ************************************************************ consensus_9874#0 CCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCT 660 consensus_9874#1 CCCACAGGTAATCAAGAAGTTTTAGAAAGATTGGTGGGAGATTACGGTCAGTCATCATCT 312 ************************************************************ consensus_9874#0 ATGAGTTCCGACAATTCTCACTTCATCTGATAAAA-TACCAGTAATGTCGNTCCTCAGTT 719 consensus_9874#1 ATGAGTTCCGACAATTCTCACT-CATCTGATAAAAATACCAGTAATGTCGTTCCTCAGTT 371 ********************** ************ ************** ********* consensus_9874#0 TCGTACTGATGATGGGCACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAA-T 778 consensus_9874#1 TCGTACTGATGATGGCAACGATATTATACATTTACTGCGTCGACTCTGTTTGACGCAAAT 431 *************** ***************************************** * consensus_9874#0 ACTATC-CTTTTATTGGATGTAAACGGGGATTCATCG-CACACTTA-AAAGCATTTGTAC 835 consensus_9874#1 ACTATCACTTTTATTGAGTGTAAACGGGGATTCATCGGCACACGTAGAAAGCAGTTGTAA 491 ****** ********* ******************* ***** ** ****** ***** consensus_9874#0 CATTCCC--ATCAAATT-TTTTTTAAAAAAAAAA---TTCCTTTATTTCCCAACATTTGT 889 consensus_9874#1 CAATGCACAGTCAAAATATTCTTTAAAAGAGAAAGATCTACTTGAATTGACGAGAACAGT 551 ** * * ***** * ** ******* * *** * *** * ** * * * ** consensus_9874#0 ACCAAAA---------TCCCCCTTACTTCCAA---TTTTACCA----TTTTTTTTTCAAA 933 consensus_9874#1 ATGTAAAGAAGAATTACGCGCTATACTTCCACAGCCTTTACAACATGTTATTTCTTCTCA 611 * *** * * ******** ***** * ** *** *** * consensus_9874#0 AAAACCAAAACTAANT--CTTGAGTTTCTTCGGGCATTCAAAACNTATCATTATTTTTAA 991 consensus_9874#1 GACAAAAAACGCAAATGACTAAAGTTGCTGTAGGTTATTCTTACTGGT-GTCAATTTCAG 670 * * *** ** * ** **** ** ** * ** * * * *** * consensus_9874#0 AACCCTTCTTGAAATTTTTCCTTTAACTTGTTTCA------------------------- 1026 consensus_9874#1 TACAATCGTTTA--TCTCATTCATAATTTTTATAAAGAGACAACTACTTACTTTCTAGGA 728 ** * ** * * * *** ** * * * consensus_9874#0 ------------------------------------------------------------ consensus_9874#1 AATATATTTTCTCTACCAGTTTTAGAAGCTACTGTTTTTCTAACAAATACACAAATTATT 788 consensus_9874#0 ------------------------------------------------------------ consensus_9874#1 TTTATTTGTACTTAATGTATTTCAGATTTAAGTTGATCGCATTCTACATTAATTTCTTGC 848 consensus_9874#0 --------------------- consensus_9874#1 TACTAATTATTTATTTCCATT 869 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||