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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9876#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1169 fasta sequence
[TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAAAAGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCTGCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGCTTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAACCAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAATAGATAATACCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTTCCTCTCCTAATTCCACTTCAGCCACTGCTGATCCGTCTACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCCTCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGCATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATCTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTNTTCTTCATATATATATGACATTCATCAAGCAACATGTCTAATGTANTCTACTATATGTTCAGCCTCCTTCTTTTT]
[+] EMBL CD147150 [TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAAAAGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCTGCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGCTTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAACCAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAATAGATAATACCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGT ]
[+] EMBL CD147192 [TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAAAGGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCTGCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGCTTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAACCAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAATAGATAATACCAACAGTATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGAC ]
[+] EMBL CD066794 [ ccgcaaCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTT ]
[-] EMBL CD066684 [ cgcaacacaAGAATTTGATTATAGACGCATGGGGAGTTGTTGAGTTACACCACCATCTGTCTAATGTTACACATGATAACCATCGTATCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTATTTACCAAATCGGCATCATTTACCTAATATATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTTCC ]
[+] EMBL CD168836 [ cTGGAAAAAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTTCCTCTCCTAATTCCACTTCAGCCACTGCTGATCCGTCTACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCCTCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGCATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATCTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCAT ]
[+] EMBL CD177960 [ ACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCCTCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATCTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTNTTCTTCATATATATATGACATTCATCAAGCAACATGTCTAATGTANTCTACTATATGTTCAGCCTCCTTCTTTTT]
consensusID : consensus_9876#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 411 fasta sequence
[TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACA-TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTTCTCATCATCAGCAGATCACCCACATAGACGGAA]
[+] EMBL CD119536 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAGTGAAATAATTCATTTCGTTGGAATAGAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATGTATCTGTATTCTTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCCCTTTTCTCATCATCAGCAGATC ]
[+] EMBL CD119532 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACATTTCATC AGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTTCTCATCATCAGCAG ]
[+] EMBL CD119592 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTCTTCATCATCAGCAG ]
[+] EMBL CD119321 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGNATNCTTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTTCTCATCATCAGCA ]
[+] EMBL CD119582 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTTCTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCTTTCTTTTTCTTCATCATCAGCA ]
[-] EMBL CD119425 [ GCGNAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGA AAAAGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACA TTCAACAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTCTTCATCATCAGCAGATCACCCACATAGACGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9876#0 TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAA 60
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 AAGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCT 120
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 GCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGC 180
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 TTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAAC 240
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 CAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAAT 300
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 AGATAATACCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAA 360
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 CTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTT 420
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 AATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGT 480
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 ATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGAT 540
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 CCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGT 600
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 GTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCG 660
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 TCAATGAACACTGATTTAAAAAATACCGATCCTTCCTCTCCTAATTCCACTTCAGCCACT 720
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 GCTGATCCGTCTACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCC 780
consensus_9876#1 ------------------------------------------------------------
consensus_9876#0 TCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGCATCA 840
consensus_9876#1 -------------------------------------------------TCGGTGTATCA 11
****** ****
consensus_9876#0 CAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCA 900
consensus_9876#1 CAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCA 71
************************************************************
consensus_9876#0 CACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCA 960
consensus_9876#1 CACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCA 131
************************************************************
consensus_9876#0 GCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTAT-------------------- 1000
consensus_9876#1 GCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTT 191
****************************************
consensus_9876#0 -----------------CTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAA 1043
consensus_9876#1 AAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAA 251
*******************************************
consensus_9876#0 AAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTNTTCTTCATA 1103
consensus_9876#1 AAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATA 311
************************************************** *********
consensus_9876#0 TATATATGACATTCATCAAGCAACATGTCTAATGTANTCTACTATA-TGTTCAGCCTCCT 1162
consensus_9876#1 TATATATGACATTCATCAAGCAACATGTCTAATGTAT-CTACTATAATGTACAGCATCCT 370
************************************ ******** *** **** ****
consensus_9876#0 TCTTTTT---------------------------------- 1169
consensus_9876#1 TCTTTTTTCTCATCATCAGCAGATCACCCACATAGACGGAA 411
*******
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||