cluster # 9883

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Schistosoma mansoni
cluster # 9883 cluster # 9883 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9883#0 length = 972 sequences # 11

consensus_9883#1 length = 354 sequences # 1

consensusID : consensus_9883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 972
fasta sequence

                              [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA-AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA-AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCAGTTTTGCGTNCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAATTTTGTGGACCNTCACTCACATTGGGCTTCAATTTNCCNTATTATNCTGT]

[+] EMBL CD161788             [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTACGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD190366             [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCGTCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGANAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD161954             [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD160462             [                             CTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCGAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTA                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD126039             [                                                                                                                                                                                                                                         TTCA G TTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAG TTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGATAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAAACATTTTACTGATATTGA                                                                                                                                                                                                                                       ]
[-] EMBL CD126138             [                                                                                                                                                                                                                                          TCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAATAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGA                                                                                                                                                                                                                                       ]
[-] EMBL CD162635             [                                                                                                                                                                                                                                                                                                                                                                                                                                    GCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGACCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTAC                                                                                                                                                                                                                                                ]
[-] EMBL CD162651             [                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTAC                                                                                                                                                                                                                                                ]
[-] EMBL CD066702             [                                                                                                                                                                                                                                                                                                                                                                                                                                               GGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCTTGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCA                                                                                                                                                                                               ]
[-] EMBL CD130758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGANAACAGCAGAGGAAGAAGcc                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL SMT14572             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAAAACTCAGAAGCNTCTAAATCNCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAANTCAGCAGTTTTGCGTNCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAATTTTGTGGACCNTCACTCACATTGGGCTTCAATTTNCCNTATTATNCTGT]




>consensus_9883#0
GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTT
AGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATAC
TTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAA
TGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGC
TTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTT
GTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCA
TGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCT
GCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAA
CCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAA
TCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTT
AGAAACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCA
TGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCC
CAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGC
AGTTTTGCGTNCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTC
ACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGA
AACCTCGTCTTTACCAAAACAATTTTGTGGACCNTCACTCACATTGGGCTTCAATTTNCC
NTATTATNCTGT

consensusID : consensus_9883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [GAGGCGGCACGAGGCGTAAATCTGATGCGAATGAAGATCATGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCAGTTTTGCGTTCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAANTTTGTGGACCTTCACTCACATTGNGCTTCAAATTTCCTTATATACCTGTAT]

[+] EMBL CD077670             [GAGGCGGCACGAGGCGTAAATCTGATGCGAATGAAGATCATGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCAGTTTTGCGTTCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAANTTTGTGGACCTTCACTCACATTGNGCTTCAAATTTCCTTATATACCTGTAT]




>consensus_9883#1
GAGGCGGCACGAGGCGTAAATCTGATGCGAATGAAGATCATGCAAAAATAGTTCAAGAAA
GTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTG
AGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCAGTTTTGCGTTCCTGAATGA
CCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTA
AATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAAC
AANTTTGTGGACCTTCACTCACATTGNGCTTCAAATTTCCTTATATACCTGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9883#0      GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTT 60
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      AGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATAC 120
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      TTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAA 180
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      TGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGC 240
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      TTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTT 300
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      GTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCA 360
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      TGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCT 420
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      GCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAA 480
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      CCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAA 540
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      TCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTT 600
consensus_9883#1      ------------------------------------------------------------
                                                                                  

consensus_9883#0      AGAAACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCA 660
consensus_9883#1      -----------------GAGGCGGCACGA---GGCGTAAATCTGATGCGAATGAAGATCA 40
                                        ** **         * **************************

consensus_9883#0      TGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCC 720
consensus_9883#1      TGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCC 100
                      ************************************************************

consensus_9883#0      CAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGC 780
consensus_9883#1      CAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGC 160
                      ************************************************************

consensus_9883#0      AGTTTTGCGTNCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTC 840
consensus_9883#1      AGTTTTGCGTTCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTC 220
                      ********** *************************************************

consensus_9883#0      ACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGA 900
consensus_9883#1      ACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGA 280
                      ************************************************************

consensus_9883#0      AACCTCGTCTTTACCAAAACAATTTTGTGGACCNTCACTCACATTGGGCTTCAATTTNCC 960
consensus_9883#1      AACCTCGTCTTTACCAAAACAANTTTGTGGACCTTCACTCACATTGNGCTTCAAATTTCC 340
                      ********************** ********** ************ ******* ** **

consensus_9883#0      NTATTATNCTGT-- 972
consensus_9883#1      TTATATACCTGTAT 354
                       ***    ****