cluster # 9889

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Schistosoma mansoni
cluster # 9889 cluster # 9889 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9889#0 length = 795 sequences # 11

consensus_9889#1 length = 261 sequences # 1

consensusID : consensus_9889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 795
fasta sequence

                              [AGTACCATCAGATAAACTCTTCGTTTCGAAAATAACACCGACTGCAACGTTCTCGCGCGCCATCACACGATTAAGCATTATTGGTGTGGGATTTTCACACATGCTTGTGCA-CGAAAGCATAAACTCATGATGAAATTCAT-GCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACAACCATCAACCTTTTTGCTTTCTTTTAATTCCATTG-TCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCTCTTCTCCGATAGTCCCAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAATTAAGCAGTCTGCCTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGTGCACGCAACTCTGTAAGGTCACCGATAGTCGACGGAAGAGAATGAAGTCTGTTACAGCTAGCGTCCAAATTCACAAGGTTT]

[+] EMBL CD187553             [AGTACCATCAGATAAACTCTTCGTTTCGAAAATAACACCGACTGCAACGTTCTCGCGCGCCATCACACGATTAAGCATTATTGGTGTGGGATTTTCACACATGCTTGTGCA CGAAAGCATAAACTCATGATGAAATTCAT GCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACAACCATCAACCTTTTTGCTTTCTTTTAATTCCATTG TCCTTCTTCTACTTTTCGGTTGAAATACAGCATCGTAATTAAGCTTTTGCTACTCTTGTTTGAAAACTTCTTCAta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD118567             [                                                                             TTATTGGTGTGGGATTTTCACACATGCTTGTGCACCGAAACCATAAACTCATGATGAAATTCAT GCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACAACCATCAACCTTTTTGCTTTCTTTTAATTCCATCG TCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD118561             [                                                                              TATTGGTGTGGGATTTTCACACATGCTTGTGCA CGAAAGCATAAACTCATGATGAAATTCAT GCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACAACCATCAACCTTTTTGCTTTCTTTTAATTCCATTG TCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCTCTTCTCCGATAGTCCCAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTANATTGNAATGGCGTANATTAAGCAGTCTGCCTA                                                                                                                             ]
[+] EMBL CD118578             [                                                                              TATTGGTGTGGGATTTTCACACATGCTTGTGCA CGAAAGCATAAACTCATGATGAAATTCATCGCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACAACCATCAACCTTTTTGCTTTCTTTTAATTCCATTG TCCTTCTTCTACTTTTCAGTAAAAATACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCTCTTCTCCGATAGTCCCAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTT                                                                                                                                                               ]
[+] EMBL CD118675             [                                                                              TATTGGTGTGGGATTTTCACACATGCTTGTGCA CGAAAGCATAAACTCATGATGAAATTCAT GCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACAACCATCAACCTTTTTGCTTTCTTTTAATTCCATTG TCCTTCTTCTACTTTTCGGTAAAAATACAGCACCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCTCTTCTCCGATAGTCCCAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTANATTGAAATGGCGTANATTAAGCAGTCTGCCTATTTCGGACGGT AATCGA                                                                                                           ]
[+] EMBL CD118568             [                                                                                                    ATGCTTGTGCA CGAAAGCATAAACTCATGATGAAATTCAT GCAACTTCTCAAATTTATTTGCCTGCCAATATATCGCACAACCATCAACCTTTTTGCTTTCTTTTAATTCCATTGCCCCTTCTTCTACTTTTCGGTACAAATACAGCATCGTAATTAAGCTTTTGCACCTCTGGTTTGAAAACTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD118614             [                                                                                                                                                  CTTCTCAAATTTATTTGTCTGCCAAAATATTGCACAACCATCAACCTTTNTGCTTTCTTTTAATTCCATTG TCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCTCTTCTCCGATAGTCCCAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTGTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAATTAAGCAGTCTGCCTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGTGCACGCAACTCTGTAAGGTCACCG                                                         ]
[-] EMBL CD118560             [                                                                                                                                                                                               CTTTNTGCTTTCTTTTAATTCCATTG TCCTTCTTCTACTNTTCGGTAAAAATACAGCATCGTAATTAAGCTTTTGCAACTCTGGTNTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCTCTTCTCCGATAGTCCCAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAATTAAGCAGTCTGCCTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGTGCACGCAACTCTGTAAGGTCACCG                                                         ]
[-] EMBL CD118684             [                                                                                                                                                                                                                       gG TCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAATTAAGCTTNTGCAACTCTGGTNTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCTCTTCTCCGATAGTCCCAGATTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAATTAAGCAGTCTGCCTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGTGCACGCAACTCTGTAAGGTCACCG                                                         ]
[-] EMBL CD118577             [                                                                                                                                                                                                                                                                                                                                                                                                                       ATACATAAATGGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTTGGTTCAGGTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAATTAAGCAGTCTGCGTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGTGCACGCAACGCTGTAAGGTCACCG                                                         ]
[+] EMBL CD121115             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAATTAAGCAGTCTGCCTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGTGCACGCAACTCTGTAAGGTCACCGATAGTCGACGGAAGAGAATGAAGTCTGTTACAGCTAGCGTCCAAATTCACAAGGTTT]




>consensus_9889#0
AGTACCATCAGATAAACTCTTCGTTTCGAAAATAACACCGACTGCAACGTTCTCGCGCGC
CATCACACGATTAAGCATTATTGGTGTGGGATTTTCACACATGCTTGTGCACGAAAGCAT
AAACTCATGATGAAATTCATGCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACA
ACCATCAACCTTTTTGCTTTCTTTTAATTCCATTGTCCTTCTTCTACTTTTCGGTAAAAA
TACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGT
TCGCAACTCCTGTAGACAATAATATTTGCATGATATATACGTATTTCATCAAGAATAGCT
CTTCTCCGATAGTCCCAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAATGGGGTT
GCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCTTTGCTT
GGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAAAGATAA
AAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCACCATAC
ATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAATTAAGC
AGTCTGCCTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGTGCACGC
AACTCTGTAAGGTCACCGATAGTCGACGGAAGAGAATGAAGTCTGTTACAGCTAGCGTCC
AAATTCACAAGGTTT

consensusID : consensus_9889#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [TAATTTCCATTGTCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTAAACAAAAATATTGTATTCAAGGACTTAACAAAATTATAATGACGAATCAAGATAGGAAACTATATTTCTCTACTCTGAATGTATCGAGAATATATATATGCATGCATTTAGACAGCTTACATAAACAATGTAGTTGAAACCCGACAGATCAA]

[-] EMBL CD181768             [TAATTTCCATTGTCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTAAACAAAAATATTGTATTCAAGGACTTAACAAAATTATAATGACGAATCAAGATAGGAAACTATATTTCTCTACTCTGAATGTATCGAGAATATATATATGCATGCATTTAGACAGCTTACATAAACAATGTAGTTGAAACCCGACAGATCAA]




>consensus_9889#1
TAATTTCCATTGTCCTTCTTCTACTTTTCGGTAAAAATACAGCATCGTAATTAAGCTTTT
GCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGTTCGCAACTCCTAAACAAAAATAT
TGTATTCAAGGACTTAACAAAATTATAATGACGAATCAAGATAGGAAACTATATTTCTCT
ACTCTGAATGTATCGAGAATATATATATGCATGCATTTAGACAGCTTACATAAACAATGT
AGTTGAAACCCGACAGATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9889#0      AGTACCATCAGATAAACTCTTCGTTTCGAAAATAACACCGACTGCAACGTTCTCGCGCGC 60
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      CATCACACGATTAAGCATTATTGGTGTGGGATTTTCACACATGCTTGTGCACGAAAGCAT 120
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      AAACTCATGATGAAATTCATGCAACTTCTCAAATTTATTTGTCTGCCAAAATATTGCACA 180
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      ACCATCAACCTTTTTGCTTTCTTTTAATTCCATTGTCCTTCTTCTACTTTTCGGTAAAAA 240
consensus_9889#1      -----------------------TAATTTCCATTGTCCTTCTTCTACTTTTCGGTAAAAA 37
                                             * * *********************************

consensus_9889#0      TACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGT 300
consensus_9889#1      TACAGCATCGTAATTAAGCTTTTGCAACTCTGGTTTGAAAACTTCTTCAAAGTGATCAGT 97
                      ************************************************************

consensus_9889#0      TCGCAACTCCTGTA-GACAATAATATTTGCATGATATATACGTATTTC--ATCAAGAAT- 356
consensus_9889#1      TCGCAACTCCTAAACAAAAATATTGTATTCAAGGACTTAACAAAATTATAATGACGAATC 157
                      ***********  *  * **** * * * ** *   *  **  * **   ** * **** 

consensus_9889#0      -AGCTCTTCTCCGATAGTCC-CAGTTTAAAGCCCATGAAGGACAGTATGGATACATAAAT 414
consensus_9889#1      AAGATAGGAAACTATATTTCTCTACTCTGAATGTATCGAGAATA-TATATATGCATGCAT 216
                       ** *      * *** * * *   *   *    **  ** * * ***  ** ***  **

consensus_9889#0      GGGGTTGCATAATTTGGACTAAGCAGATTGTAACACATAAGTGTAAACGCAAAGCCATCT 474
consensus_9889#1      TTAGACAGCTTACATAAACAATGTAG-TTGAAACCCGACAGATCAA-------------- 261
                         *     * *  *  ** * * ** *** *** *   **   **              

consensus_9889#0      TTGCTTGGTTCAGCTAATCGTCTCCATTGTCTTGGAGGTGGTGAGCTATGAACATTGTAA 534
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      AGATAAAAATAATCCATATAATAGCGAATCATGCGTCGGATATTCGAGTCAGAACCATCA 594
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      CCATACATTGAACTAACTTCAGCACTCAATGGATTATCATTTAAATTGAAATGGCGTAAA 654
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      TTAAGCAGTCTGCCTATTTCGGACGGTAAATCGACTATTTTGTTATCATTTAGAATAAGT 714
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      GCACGCAACTCTGTAAGGTCACCGATAGTCGACGGAAGAGAATGAAGTCTGTTACAGCTA 774
consensus_9889#1      ------------------------------------------------------------
                                                                                  

consensus_9889#0      GCGTCCAAATTCACAAGGTTT 795
consensus_9889#1      ---------------------