These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 906 fasta sequence [CANGCCAGAATTCTGCACGAGGCTGCAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTA-TCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA-CGTTCAGAATT-TAAAAGCTTAATTTTAATGTTAAACATTTT--TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA-CCTGAAGTAGAAACT-TTGTTCTCAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGAGGTTACGCATTTCTGATTTTCCATCTTCACTTAATCATTAACTCAGAA] [+] EMBL CD079565 [CANGCCAGAATTCTGCACGAGGCTGCAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTA TCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAAGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTNTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAANCG TCAGAATTNAAAAAGC TAATTNTAATGGTAANCATTNTNNTTGCG TATTAANTAANTNTACCCTNCATGTACTATCATATTGACTACCCTG AGTAGAAACTNNTG TCTCAATCTTCAATACTGAAATGnt ] [-] EMBL CD073831 [ ACTATTCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA CGTTCAGAATT TAAAAGCTTAATTTTAATGTTAAACATTTT TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA CCTGAAGTAGAAACT TTGTTCTCAATCTTCAAAAATGAAATGTTT ] [-] EMBL CD076281 [ CAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA CGTTCAGAATT TAAAAGCTTAATTTTAATGTTAAACATTTT TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA CCTGAAGTAGAAACT TTGTTCTCAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGAGGTTACGCATTTCTGATTTTCCATCTTCACTTAATCATTAACTCAGAA] [-] EMBL CD177763 [ TTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACC ] [-] EMBL CD171526 [ TTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACC ] [+] EMBL AI764816 [ AGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA CGTTCAGAATT TAAAAGCTTAATTTTAATGTTAAACATTTT TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA CCTGAAGTAGAAACT TTGTTCTCAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGGGGTTACGCATTTCTGATTTGCCATC TCACTTAATCATTAACTCA ] [+] EMBL BG932169 [ gcagtgTCCAAAACCATATAACAGTTTGAGCGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATCTCTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCc ] consensusID : consensus_9892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 820 fasta sequence [AAGCTGAATGATACATCTTTATATCAAACCGATATTTGTAGGTGTTGGTAGTCTGTATATGCGTCCTGTTTCGAATTATGTCTTGGGTATCTGGGATCGGAAAAGCAATCCATTTATAATCGTCAACTTGTGAGTCAGGTCTTATTTTAAGTGTTTATCAAGTCGGACTTACGTTGGAAACTTCTTGGTTCTGTACGCGAAGCTGACTCTAGCCATTTAAATAATACGGACTCTGTTAAATGGCTTTTAGCATAGCATACATAGACAATTCAATACACACTTAACTAAACACCAACTATTTAATGTGTAACCTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGTTATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTTACTTTTATTGTTTAAATATGACACTGCCTAGTTTGTCGACATTTGCTTCCACAATTGTTGTCCATTTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTCAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCT] [+] EMBL CD068252 [AAGCTGAATGATACATCTTTATATCAAACCGATATTTGTAGGTGTTGGTAGTCTGTATATGCGTCCTGTTTCGAATTATGTCTTGGGTATCTGGGATCGGAAAAGCAATCCATTTATAATCGTCAACTTGTGAGTCAGGTCTTATTTTAAGTGTTTATCAAGTCGGACTTACGTTGGAAACTTCTTGGTTCTGTACGCGAAGCTGACTCTAGCCATTTAAATAATACGGACTCTGTTAAATGGCTTTTAGCATAGCATACATAGACAATTCAATACACACTTAACTAAACACCAACTATTTAATGTGTAACCTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGTTATTAAAAATACTTGCTGTT ] [+] EMBL CD154414 [ TATTT TG GCTACCTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGTTATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTTACTTTTATTGTTTAAATATGACACTGCCTAGTTTGTCGACATTTGCTTCCACAATTGTTGTCCATTTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTCAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCT] [-] EMBL CD158916 [ TCATTGTTATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTTACTTTTATTGTTTAAATATGACACTGCTTAGTTTGTCGACATTTGCTTCCACAATTGTTGTCCATTTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTGGTCAGA TTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAA ] consensusID : consensus_9892#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCTCGAGCCAANAATTCGGCACGAGGACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTTAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTATCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCAAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTANAACAATTGATGCTA] [+] EMBL CD082690 [CCTCGAGCCAANAATTCGGCACGAGGACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTTAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTATCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCAAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTANAACAATTGATGCTA] consensusID : consensus_9892#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [TTCGGGCGAGGCCGCTAAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCA] [+] EMBL BE431271 [TTCGGGCGAGGCCGCTAAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9892#0 CANGCCAGAATTCTGCACGAGGCTGCAGAGTATCTTTTAAATCCTAACGAATTATCTGTC 60 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 ------------------------------------------------------------ consensus_9892#2 ------------------------------------------------------------ consensus_9892#0 CTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGC 120 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 ------------------------------------------------AAGCTGAATGAT 12 consensus_9892#2 ------------------------------------------------------------ consensus_9892#0 GTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTATCTACAACATAAA 180 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 ACATCTTTATATCAAACCGATATTTGTAGGTGTTGGTAGTCTGTATATGCGTCCTGTTTC 72 consensus_9892#2 ------------------------------------------------------------ consensus_9892#0 AGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATA 240 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 GAATTATGTCTTGGGTATCTGGGATCGGAAAAGCAATCCATTTATAATCGTCAACTTGTG 132 consensus_9892#2 --------CCTCGAG--CCAANAATTCGGCACG-AGGACACGTACCACCAT-GGCTTATA 48 consensus_9892#0 CATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATT 300 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 AGTCAGGTCTTATTTTAAGTGTTTATCAAGTCGGACTTACGTTGGAAACTTCTTGGTTCT 192 consensus_9892#2 AAGGTGGTCAGATTT------TTTGCTACATTGT-TACATGTTTCAAAAT---TGGAACC 98 consensus_9892#0 AAACTTGAGTTCAATTTAGGTGACTTATGCAAT--GCATTAAAACAATTGATGCTAAAAA 358 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 GTACGCGAAGCTGACTCTAGCCATTTAAATAATACGGACTCTGTTAAATGGCTTTTAGCA 252 consensus_9892#2 ACCTGTAGTGGCGGAT---GCCAATCAAAAATT--GAGTGCTGTTGAAGCACA---AATT 150 consensus_9892#0 TAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGA 418 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 TAGCATACATAGACAATTCAATACACACTTAAC-TAAACACCAACTATTTAATGTGTAAC 311 consensus_9892#2 AAAAATGCCAAAATGAAACAAAGCG--TCAAAT-CAGAAA--ACCTACTTGATACGTGGT 205 consensus_9892#0 TCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTAT 478 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 CTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGT 371 consensus_9892#2 CATC-CAACCAACAATTACCACCATCAAATCCGCAGTCAAATTTAATCCATTCT-GTTGG 263 consensus_9892#0 TGTTCCCTAGAG--GGCGTTCACATACAGTCAACGA-AATTATAGCAATGCATCAAGAAG 535 consensus_9892#3 ----------------------------------------------------TTCGGGCG 8 consensus_9892#1 TATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTT 431 consensus_9892#2 TGTAGAAA----------------CACAATGGGATT--ACAATAAGATTTCATCCCC-TG 304 * consensus_9892#0 CTTACGATATGCGAAATCAAGC----TGTTGCAAAGCAATGTATGATGGGATACTCCAAA 591 consensus_9892#3 AGGCCGCTA----AAATCAAGC----TGTTGCAAAGCAATGTATGATGGGATACTCCAAA 60 consensus_9892#1 ACTTTTATTGTTTAAATATGACACTGCCTAGTTTGTCGACATTTGCTTCCACAATTGTTG 491 consensus_9892#2 AAGAGTATCTTTTAAAT---------CCTAACGAATTATC--TGTCCTACAAAAGCAACA 353 * **** * * * consensus_9892#0 ACCATATAACACTTT----GAGTGGAACCTCAGCACTTAGCCTTCTCACTGA----GACC 643 consensus_9892#3 ACCATATAACACTTT----GAGTGGAACCTCAGCACTTAGCCTTCTCACTGA----GACC 112 consensus_9892#1 TCCAT-TTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTG 550 consensus_9892#2 ACTTT-CAATGCTATCAGACGGTTCA--CGAATATCCTATTGCACTAGCGTG-AATGGCT 409 * * * ** * ** * * * * ** * * * consensus_9892#0 ATCTGATTTTTT---TCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCT 700 consensus_9892#3 ATCTGATTTTTT---TCA------------------------------------------ 127 consensus_9892#1 GTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGAT 610 consensus_9892#2 GCCAG--TTTTCAAGTCATCACTA------TCCGAACCAAAACTATCTACAACA-TAAAA 460 * * **** ** consensus_9892#0 TGATTCCAAACGTTCAGAATTTAAAAGCTTAATTTTAATGTTAAACATTTTTTGCGTTAT 760 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 GCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGC 670 consensus_9892#2 GTATTCCATGGGGTGATTA-TGCCATGAATCAGTCAAATGAATCTGGAAC--AGCTAAGA 517 consensus_9892#0 TAATTAATTTTACCCTTCATGTACTATCATATTGACTACCTGAAGTAGAAACTTTGTTCT 820 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 GTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAAT 730 consensus_9892#2 TACATGATAAAATGCTTAAAAAATTCA-AACAATCTAAACAACAATCA-----AGAGGAT 571 consensus_9892#0 CAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGAGGTTACGCATTTCTGATTTTCC 880 consensus_9892#3 ------------------------------------------------------------ consensus_9892#1 CCGCAGTCAAATTCAA-TCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGAT 789 consensus_9892#2 CTACAATTAAACTTGAGTTCAATTTA--GGTG-ACTTATGCAATGC-ATTANAACAA--- 624 consensus_9892#0 ATCTTCACTTAATCATTAACTCAGAA----- 906 consensus_9892#3 ------------------------------- consensus_9892#1 TTCATCCCCTGAAGAGTATCTTTTAAATCCT 820 consensus_9892#2 TTGATGCTA---------------------- 633 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||