|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[CCCAACGNAGNGCAATAGGTAGGTAACTGAGGACTTTAAGACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTCATCTAGAGAAACCAAACATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACACGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCA]
[+] EMBL CD127431 [CCCAACGNAGNGCAATAGGTAGGTAACTGAGGACTTTAAGACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTCATCTAGAGAAACCAAACATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACACGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCA]
consensusID : consensus_9896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 623 fasta sequence
[AGGTAGGTAACTGAGGACTTCAAG-ACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT-CAAAAAGCTTCGGATGCCATTCGCCCT-CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA--AA-TACAATC-TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCAATGGTTC]
[+] EMBL CD127892 [AGGTAGGTAACTGAGGACTTTTAGTACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGGGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATC TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCAATGGTTC]
[+] EMBL CD127708 [ CTGAGGACTTCAAG ACTCACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTAGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTT ]
[+] EMBL CD127468 [ CTTCAAG A ACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATC TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACA ]
[-] EMBL CD127287 [ TTCAAG ACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTGCAAAAAGCTTCGGATGCCATTCGCCATACAAAGAGCCAAAATC ]
[-] EMBL CD127359 [ TCAAG ACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTACACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCGCAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGGTCCATATTGAGTTTGCTGCTAAGTATACTTACAGAATTGGGTTTCTAAAGGAAGTTAAATC TTAGTTCGTCAGGATGCATCGCTGTACATCTCCACAAGCATGTACATCTACATCTCGACAA ]
[-] EMBL CD063759 [ CCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATCAGGAGTTCTTCcag ]
[-] EMBL CD127712 [ AAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATC TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACGAGCATGTACATCTACATCTCGACAA ]
consensusID : consensus_9896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 619 fasta sequence
[CTTCAAGACCACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATC-ATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTAAAGGAAGTTACTTGACAATGAAACTATTATAAAACCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACA]
[+] EMBL CD127515 [CTTCAAGACCACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATC ATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTAAAGGAAGTTACTTGACAATGAAACTATTATAAAACCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACA]
[-] EMBL CD086050 [ CACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATT ]
[-] EMBL CD064110 [ TCTCATAGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTGTCTTCTATAACag ]
consensusID : consensus_9896#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[CTCTGACAGAGCTAATTTCACTTAAGGATGAGTCGTAGAAGAAGTGTAAAAGGTTTTAATGGTCTACCTATTCGCCAAAACGAAAATACTGAATCTGATCAAATCTCATCTTACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCTTTTTCAAGCACTATCATAGTTACAGTGAACAGTTGTTTCTCATTCCTTGGTACTAGTGATTTGTCTATAAGACTGTTTCAACTGTTTACGCAGTTAAGCATCGAGTAGTTCAGGTTACCTTATATGAATTCCACTTCCGATCAAAACCTTGTGATCTATTGAATAACAAAA]
[+] EMBL CD201462 [CTCTGACAGAGCTAATTTCACTTAAGGATGAGTCGTAGAAGAAGTGTAAAAGGTTTTAATGGTCTACCTATTCGCCAAAACGAAAATACTGAATCTGATCAAATCTCATCTTACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCTTTTTCAAGCACTATCATAGTTACAGTGAACAGTTGTTTCTCATTCCTTGGTACTAGTGATTTGTCTATAAGACTGTTTCAACTGTTTACGCAGTTAAGCATCGAGTAGTTCAGGTTACCTTATATGAATTCCACTTCCGATCAAAACCTTGTGATCTATTGAATAACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9896#0 -CCCAACGNAGNGCAATAGGTAGGTAACTGAGGACTTTAAGACACACGCTGAGCTCCATA 59
consensus_9896#1 -----------------AGGTAGGTAACTGAGGACTTCAAGACACACGCTGAGCTCCATA 43
consensus_9896#2 ----------------------------------CTTCAAGAC-CACGCTGAGCTCCATA 25
consensus_9896#3 CTCTGACAGAGCTAATTTCACTTAAGGATGAGTCGTAGAAGAAGTGTAAAAGGTTTTAAT 60
* **** * * *
consensus_9896#0 AGGCAATTGAT------ATATGCTATCAC--ACTCTTAT-GTGTTATACCAGACCAGTTG 110
consensus_9896#1 AGGCAATTGAT------ATATGCTATCAC--ACTCTTAT-GTGTTATACCAGACCAGTTG 94
consensus_9896#2 AGGCAATTGAT------ATATGCTATCAC--ACTCTTAT-GTGTTATACCAGACCAGTTG 76
consensus_9896#3 GGTCTACCTATTCGCCAAAACGAAAATACTGAATCTGATCAAATCTCATCTTACCAGTTG 120
* * * ** * * * * ** * *** ** * * * ********
consensus_9896#0 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 170
consensus_9896#1 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 154
consensus_9896#2 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 136
consensus_9896#3 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 180
************************************************************
consensus_9896#0 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCT 230
consensus_9896#1 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCT 214
consensus_9896#2 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCT 196
consensus_9896#3 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCTTTTTCAAGC 240
************************************************** * * *
consensus_9896#0 GCAATCGAA--TACA---AATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCAT 285
consensus_9896#1 GCAATCGAA--TACA---AATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCAT 269
consensus_9896#2 GCAATCGAA--TACA---AATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCAT 251
consensus_9896#3 ACTATCATAGTTACAGTGAACAGTTGTTTCTCATTCCTTGGTACTAGT--GATTTGTCTA 298
* *** * **** ** ** * ** ** * *** * *
consensus_9896#0 GAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCAT 345
consensus_9896#1 GAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCAT 329
consensus_9896#2 GAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCAT 311
consensus_9896#3 TAAGACTGTTTCAACTGTTTACG----CAGTTAAGCATCGAGTAGTTCAGGTTACCTTAT 354
*** ** ** ** *** * ** * **** * ** *** * **
consensus_9896#0 CATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATT 405
consensus_9896#1 CATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATT 389
consensus_9896#2 CATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATT 371
consensus_9896#3 -ATGAATTCC-ACTTCCGATCAAAACCTTGTGATCTAT----TGAATAACAAAA------ 402
** **** * * * * ** ** ****** ** ** ** * *
consensus_9896#0 CCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTCATC 465
consensus_9896#1 CCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTC-- 447
consensus_9896#2 CCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTC-- 429
consensus_9896#3 ------------------------------------------------------------
consensus_9896#0 TAGAGAAACCAAACATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTG 525
consensus_9896#1 -----------ATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTG 496
consensus_9896#2 -----------ATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTG 478
consensus_9896#3 ------------------------------------------------------------
consensus_9896#0 CTGCTAAGTATCCTTACAGAATTGGGTTTCT----------------------------- 556
consensus_9896#1 CTGCTAAGTATCCTTACAGAATTGGGTTTCT----------------------------- 527
consensus_9896#2 CTGCTAAGTATCCTTACAGAATTGGGTTTCTAAAGGAAGTTACTTGACAATGAAACTATT 538
consensus_9896#3 ------------------------------------------------------------
consensus_9896#0 ---------CAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACACGC 607
consensus_9896#1 ---------CAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGC 578
consensus_9896#2 ATAAAACCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGC 598
consensus_9896#3 ------------------------------------------------------------
consensus_9896#0 ATGTACATCTACATCTCGACAAACCTAATAGACCTCCA------- 645
consensus_9896#1 ATGTACATCTACATCTCGACAAACCTAATAGACCTCCAATGGTTC 623
consensus_9896#2 ATGTACATCTACATCTCGACA------------------------ 619
consensus_9896#3 ---------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||