These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCCAACGNAGNGCAATAGGTAGGTAACTGAGGACTTTAAGACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTCATCTAGAGAAACCAAACATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACACGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCA] [+] EMBL CD127431 [CCCAACGNAGNGCAATAGGTAGGTAACTGAGGACTTTAAGACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTCATCTAGAGAAACCAAACATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACACGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCA] consensusID : consensus_9896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 623 fasta sequence [AGGTAGGTAACTGAGGACTTCAAG-ACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT-CAAAAAGCTTCGGATGCCATTCGCCCT-CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA--AA-TACAATC-TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCAATGGTTC] [+] EMBL CD127892 [AGGTAGGTAACTGAGGACTTTTAGTACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGGGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATC TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACAAACCTAATAGACCTCCAATGGTTC] [+] EMBL CD127708 [ CTGAGGACTTCAAG ACTCACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTAGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTT ] [+] EMBL CD127468 [ CTTCAAG A ACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATC TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACA ] [-] EMBL CD127287 [ TTCAAG ACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTGCAAAAAGCTTCGGATGCCATTCGCCATACAAAGAGCCAAAATC ] [-] EMBL CD127359 [ TCAAG ACACACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTACACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGT CAAAAAGCTTCGGATGCCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCGCAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGGTCCATATTGAGTTTGCTGCTAAGTATACTTACAGAATTGGGTTTCTAAAGGAAGTTAAATC TTAGTTCGTCAGGATGCATCGCTGTACATCTCCACAAGCATGTACATCTACATCTCGACAA ] [-] EMBL CD063759 [ CCATTCGCCCT CAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATCAGGAGTTCTTCcag ] [-] EMBL CD127712 [ AAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTCAA AA TACAATC TTAGTTCGTCAGGATGCATCGCTGTACATTTCCACGAGCATGTACATCTACATCTCGACAA ] consensusID : consensus_9896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 619 fasta sequence [CTTCAAGACCACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATC-ATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTAAAGGAAGTTACTTGACAATGAAACTATTATAAAACCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACA] [+] EMBL CD127515 [CTTCAAGACCACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTCATC ATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTGCTGCTAAGTATCCTTACAGAATTGGGTTTCTAAAGGAAGTTACTTGACAATGAAACTATTATAAAACCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGCATGTACATCTACATCTCGACA] [-] EMBL CD086050 [ CACGCTGAGCTCCATAAGGCAATTGATATATGCTATCACACTCTTATGTGTTATACCAGACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATT ] [-] EMBL CD064110 [ TCTCATAGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCTGCAATCGAATACAAATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCATGAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCATCATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATTCCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTGTCTTCTATAACag ] consensusID : consensus_9896#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [CTCTGACAGAGCTAATTTCACTTAAGGATGAGTCGTAGAAGAAGTGTAAAAGGTTTTAATGGTCTACCTATTCGCCAAAACGAAAATACTGAATCTGATCAAATCTCATCTTACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCTTTTTCAAGCACTATCATAGTTACAGTGAACAGTTGTTTCTCATTCCTTGGTACTAGTGATTTGTCTATAAGACTGTTTCAACTGTTTACGCAGTTAAGCATCGAGTAGTTCAGGTTACCTTATATGAATTCCACTTCCGATCAAAACCTTGTGATCTATTGAATAACAAAA] [+] EMBL CD201462 [CTCTGACAGAGCTAATTTCACTTAAGGATGAGTCGTAGAAGAAGTGTAAAAGGTTTTAATGGTCTACCTATTCGCCAAAACGAAAATACTGAATCTGATCAAATCTCATCTTACCAGTTGGAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATGGTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCTTTTTCAAGCACTATCATAGTTACAGTGAACAGTTGTTTCTCATTCCTTGGTACTAGTGATTTGTCTATAAGACTGTTTCAACTGTTTACGCAGTTAAGCATCGAGTAGTTCAGGTTACCTTATATGAATTCCACTTCCGATCAAAACCTTGTGATCTATTGAATAACAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9896#0 -CCCAACGNAGNGCAATAGGTAGGTAACTGAGGACTTTAAGACACACGCTGAGCTCCATA 59 consensus_9896#1 -----------------AGGTAGGTAACTGAGGACTTCAAGACACACGCTGAGCTCCATA 43 consensus_9896#2 ----------------------------------CTTCAAGAC-CACGCTGAGCTCCATA 25 consensus_9896#3 CTCTGACAGAGCTAATTTCACTTAAGGATGAGTCGTAGAAGAAGTGTAAAAGGTTTTAAT 60 * **** * * * consensus_9896#0 AGGCAATTGAT------ATATGCTATCAC--ACTCTTAT-GTGTTATACCAGACCAGTTG 110 consensus_9896#1 AGGCAATTGAT------ATATGCTATCAC--ACTCTTAT-GTGTTATACCAGACCAGTTG 94 consensus_9896#2 AGGCAATTGAT------ATATGCTATCAC--ACTCTTAT-GTGTTATACCAGACCAGTTG 76 consensus_9896#3 GGTCTACCTATTCGCCAAAACGAAAATACTGAATCTGATCAAATCTCATCTTACCAGTTG 120 * * * ** * * * * ** * *** ** * * * ******** consensus_9896#0 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 170 consensus_9896#1 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 154 consensus_9896#2 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 136 consensus_9896#3 GAAATGGAATATGAACTCATTTGCCGGATGTACGTCAGCAGAACGGCAGAACATCTCATG 180 ************************************************************ consensus_9896#0 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCT 230 consensus_9896#1 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCT 214 consensus_9896#2 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCATAATAACCT 196 consensus_9896#3 GTAATGGTCAAAAAGCTTCGGATGCCATTCGCCCTCAAAGAGCCAAAATCTTTTTCAAGC 240 ************************************************** * * * consensus_9896#0 GCAATCGAA--TACA---AATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCAT 285 consensus_9896#1 GCAATCGAA--TACA---AATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCAT 269 consensus_9896#2 GCAATCGAA--TACA---AATGTTTTATCCTTGAAGAAAAGTCCGAGTTCAACAGAGCAT 251 consensus_9896#3 ACTATCATAGTTACAGTGAACAGTTGTTTCTCATTCCTTGGTACTAGT--GATTTGTCTA 298 * *** * **** ** ** * ** ** * *** * * consensus_9896#0 GAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCAT 345 consensus_9896#1 GAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCAT 329 consensus_9896#2 GAAGTCTTTTCAAAGCACAGACGATATCGCTTTCTGACCGAGAACTTTCGGTATTTTCAT 311 consensus_9896#3 TAAGACTGTTTCAACTGTTTACG----CAGTTAAGCATCGAGTAGTTCAGGTTACCTTAT 354 *** ** ** ** *** * ** * **** * ** *** * ** consensus_9896#0 CATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATT 405 consensus_9896#1 CATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATT 389 consensus_9896#2 CATCAATTTCGAGATTAGTTCGAATAATTGTGAGGTACGTTCTGCATTGTAGATGCAATT 371 consensus_9896#3 -ATGAATTCC-ACTTCCGATCAAAACCTTGTGATCTAT----TGAATAACAAAA------ 402 ** **** * * * * ** ** ****** ** ** ** * * consensus_9896#0 CCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTCATC 465 consensus_9896#1 CCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTC-- 447 consensus_9896#2 CCGAACACAATCGGACCATTTGTATGCATTCCGAACTATCCAATGATTCTTTTTTTTC-- 429 consensus_9896#3 ------------------------------------------------------------ consensus_9896#0 TAGAGAAACCAAACATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTG 525 consensus_9896#1 -----------ATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTG 496 consensus_9896#2 -----------ATCATTACTTGCACTGGACATACTAAATGTTCGATCCATATTGAGTTTG 478 consensus_9896#3 ------------------------------------------------------------ consensus_9896#0 CTGCTAAGTATCCTTACAGAATTGGGTTTCT----------------------------- 556 consensus_9896#1 CTGCTAAGTATCCTTACAGAATTGGGTTTCT----------------------------- 527 consensus_9896#2 CTGCTAAGTATCCTTACAGAATTGGGTTTCTAAAGGAAGTTACTTGACAATGAAACTATT 538 consensus_9896#3 ------------------------------------------------------------ consensus_9896#0 ---------CAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACACGC 607 consensus_9896#1 ---------CAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGC 578 consensus_9896#2 ATAAAACCTCAAAATACAATCTTAGTTCGTCAGGATGCATCGCTGTACATTTCCACAAGC 598 consensus_9896#3 ------------------------------------------------------------ consensus_9896#0 ATGTACATCTACATCTCGACAAACCTAATAGACCTCCA------- 645 consensus_9896#1 ATGTACATCTACATCTCGACAAACCTAATAGACCTCCAATGGTTC 623 consensus_9896#2 ATGTACATCTACATCTCGACA------------------------ 619 consensus_9896#3 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||