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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 683 fasta sequence
[ATGTTTCTATGTACAAAATGCGCGCTGGGTGATAGACAGGAAAAATTAGAAGTTTGGCGCATTTACTGAAGATGGAAATTAAAGAAATGACGAAGAACCATTGGCATAGCCAATGTCTTAAGCATCTCAACCTGGATGGTTGATGGTTTTAACAAAATTGGTGAGATCACTTTTGTT-AAAAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTCTATAACCTCANATGATTNTGTATTATTTGTCTCATGAGGAAGTTTATCAGAGTAGCTATTTTCAGAGATAACCGTTTCTTTGTGTAGGTGAAATTCTTGGGACGATGACTTGTTACTTGACTGTTTAGACTTTTTCAAACGTTTTACCTGTACTAAATTGCAGTCCTCATTGTCAACAGGAGGATCAATATGATCCTCGTGCCGA]
[+] EMBL CD121748 [ATGTTTCTATGTACAAAATGCGCGCTGGGTGATAGACAGGAAAAATTAGAAGTTTGGCGCATTTACTGAAGATGGAAATTAAAGAAATGACGAAGAACCATTGGCATAGCCAATGTCTTAAGCATCTCAACCTGGATGGTTGATGGTTTTAACAAAATTGGTGAGATCACTTTTGTT AAAAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTCTATAACCTCANATGATTNTGTATTATTTGTCTCATGAGGAAGTTTA ]
[+] EMBL CD121223 [ATGTTTCTATGTACAAAATGCGCGCTGGGTGATAGACAGGAAAAATTAGAAGTTTGGCGCATTTACTGAAGATGGAAATTAAAGAGATGACGAAGAACCATTGGCATAGCCAATGTCTTAAGCATCTCAACCTGGATGGTTGATGGTTTTAACAAAATTGGTGAGATCACTTTTGTT AAAAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATCCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTCTATAACCTCANATGATTNTGTATTATTTGTCTCATGAGGAAGTTTA ]
[+] EMBL CD121744 [ATGTTTCTATGTACAAAATGCGCGCTGGGTGATAGACAGGAAAAATTAGAAGTTTGGCGCATTTACTGAAGATGGAAATTAAAGAAATGACGAAGAACCATTGGCATAGCCAATGTCTTAAGCATCTCAACCTGGATGGTTGATGGTTTTAACAAAATTGGTGAGATCACTTTTGTT AAAAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTCTATAACCTCANATGATTNTGTATTATTTGTCTCATGAGGAAGTTTA ]
[-] EMBL CD121245 [ TGTTTCTATGTACANAATGCGCGCTGGGTGATAGACAGGAANAATTAGAAGTTTGGCGCATTTACTGAAGATGGAAATTAAAGAAATGACGAAGAACCATTGGCATAGCCAATGTCTTAAGCATCTCAACCTGGATGGTTGATGGTTTTAACAAAATTGGTGAGATCACTTTTGTT AAAAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTCTATAACCTCAAATGATTTTGTATTATTTGTCTCATGAGGAAGTTTAT ]
[+] EMBL CD129568 [ AGTTTGGCGCATTTACTGAAGATGGAAATTAAAGAAATGACGAAGAACCATTGGCATAGCCAATGTCTTAAGCATCTCAACCTGGATGGTTGATGGTTTTAACAAAATTGGTGAGATCACTTTTGTTAAAAAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCAT ]
[-] EMBL CD078257 [ CCATTGGGATAGCCAATGTCTTAAGCATCTCAACCTGGATGGTTGATGGTGTTAACAAAATTGGTGAGATCACTTTTGTT AAAAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTCTATAAC ]
[-] EMBL CD078338 [ GATGGTTTTAACAAAATTGGTGAGATCGCTTTTGTT AAAAAAGAATGCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATCAGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTGTACAATTTTAGACTACATCTGTCACTACTTGACTGGATGAAACATCCGATATGTTGTGATGAGACCCATCAACGTCATTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTGTATAAC ]
[-] EMBL CD077598 [ TCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCCTCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCTTCTATAACCTCAAATGATTTTGTATTATTTGTCTCATGAGGAAGTTTATCAGAGTAGCTATTTTCAGAGATAACCGTTTCTTTGTGTAGGTGAAATTCTTGGGACGATGACTTGTTACTTGACTGTTTAGACTTTTTCAAACGTTTTACCTGTACTAAATTGCAGTCCTCATTGTCAACAGGAGGATCAATATGATCCTCGTGCCGA]
consensusID : consensus_9902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 623 fasta sequence
[AACTGTTTATTGTATACCAAATAACTGGCGCATGAGAAATCATCCGGAACCAGAAAGGCATATGCGAAATACGAACGAGTGACCATTGATCATATCAACACAGACTCACATTACATATATCAATTAAGTATTAAGACATGTGTTATGATGTATTCATTTCAATTGACAGTCTGAAAAAAAATCTGAAACAATTTGAGATGTCTACAAAGAACATTATTAAACAAAGCGCATTTACAAAAGGCAAATGCCTATTGGTTGTACAAACATTAGTCTACATAAAGTAATTTTTAAATTCCCCACCCATTTAATACAACGTTTCTATGTACAAAATGCGCGCTGGGTGATAGACAGGAAAATTAGAAGTTTGGCGCATTTACTGAAGATGGAATTTAAAGAATTGACGAAGAACCATTGGCATAGCAATGTCTTAAGCATCTCACCTTGGATGGTTGATGGTTTTAACAAATTGGTGAGATCACTTTTGTATAAAAAGACCCCCGTATGTTTGTAAGACAAGGCCGTGTATATGGTTCATTTCGACGTCTCACAGTTTTGTAAAAAGTAAGGAATGGATGCTAACACTTTGTACATTTTAGACCACATCCGGCCACACTGGACTGGAT]
[+] EMBL CD072896 [AACTGTTTATTGTATACCAAATAACTGGCGCATGAGAAATCATCCGGAACCAGAAAGGCATATGCGAAATACGAACGAGTGACCATTGATCATATCAACACAGACTCACATTACATATATCAATTAAGTATTAAGACATGTGTTATGATGTATTCATTTCAATTGACAGTCTGAAAAAAAATCTGAAACAATTTGAGATGTCTACAAAGAACATTATTAAACAAAGCGCATTTACAAAAGGCAAATGCCTATTGGTTGTACAAACATTAGTCTACATAAAGTAATTTTTAAATTCCCCACCCATTTAATACAACGTTTCTATGTACAAAA ]
[+] EMBL AI559072 [ CATATCAACACAGACTCACATTACATATATCAATTAAGTATTAAGACATGTGTTATGATGTATTCATTTCAATTGACAGTCTGAAAAAAAATCTGAAACAATTTGAGATGTCTACAAAGAACATTATTAAACAAAGCGCATTTACAAAAGGCAAATGCCTATTGGTTGTACAAACATTAGTCTACATAAAGTAATTTTTAAATTCCCCAGTCATTTAATACAATGTTTCTATGTACAAAATGCGCGCTGGGTGATAGACAGGAAAATTAGAAGTTTGGCGCATTTACTGAAGATGGAATTTAAAGAATTGACGAAGAACCATTGGCATAGCAATGTCTTAAGCATCTCACCTTGGATGGTTGATGGTTTTAACAAATTGGTGAGATCACTTTTGTATAAAAAGACCCCCGTATGTTTGTAAGACAAGGCCGTGTATATGGTTCATTTCGACGTCTCACAGTTTTGTAAAAAGTAAGGAATGGATGCTAACACTTTGTACATTTTAGACCACATCCGGCCACACTGGACTGGAT]
consensusID : consensus_9902#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[AGGGACGAGAGAGAAAATAGAAACAGTGAGTGATGGATTTGAAATGAGTGGTCAATTAAGTCCATCTTTATTAGCGTCAGATACCAGTTTATCGAACGCCAAAAATCCTAACCATATTAATGATAATGAATATAAAGAAAATGTAACCGGTTCAAATTCAAGTGATGCACAAAACTCATCAGTATCAAGTTCCATCATGTCTGATATCTCCCATAAAATAAAGCGAAATCATATTGATCCTCCTGTTGACAATGAGGACTGCAATTTAGTACAGGTAAAACGTTTGAAAAAGTCTAAACAGTCAAGTAACAAGTCATCGTCCC]
[+] EMBL CD124422 [AGGGACGAGAGAGAAAATAGAAACAGTGAGTGATGGATTTGAAATGAGTGGTCAATTAAGTCCATCTTTATTAGCGTCAGATACCAGTTTATCGAACGCCAAAAATCCTAACCATATTAATGATAATGAATATAAAGAAAATGTAACCGGTTCAAATTCAAGTGATGCACAAAACTCATCAGTATCAAGTTCCATCATGTCTGATATCTCCCATAAAATAAAGCGAAATCATATTGATCCTCCTGTTGACAATGAGGACTGCAATTTAGTACAGGTAAAACGTTTGAAAAAGTCTAAACAGTCAAGTAACAAGTCATCGTCCC]
consensusID : consensus_9902#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence
[GCCCGGTACCCCATGTTTGATATCTCCCATAAAATAAAGCGAAATCATATTGATCCTCCTGTTGACAATGAGAACTGCAATTTAGTACAGGTAAAACGTTTGAAAAAGTCTAAACAGTCAAGTAA]
[+] EMBL CD168043 [GCCCGGTACCCCATGTTTGATATCTCCCATAAAATAAAGCGAAATCATATTGATCCTCCTGTTGACAATGAGAACTGCAATTTAGTACAGGTAAAACGTTTGAAAAAGTCTAAACAGTCAAGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9902#2 ---------------------------------------AGGGACGAGAGAGAAAATAGA 21
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 ATGTTTCTATGTACAAAATGCGCGCTGGGTGATAGACAGGAAAAATTAGAAGTTTGGCGC 60
consensus_9902#1 ----------------------AACTGTTTATTGTATACCAAATAACTGGCGCATGAGAA 38
consensus_9902#2 AACAGTGAGTGATGGATTTGAAATGAGTGGTCAATTAAGTCCATCTTTATTAGCG--TCA 79
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 ATTTACTGAAGATGGAAATTAAAGAAATGACGAAGAACCATTGGCATAGCCAATGTCTTA 120
consensus_9902#1 ATCATCCGGAACCAGAAA---GGCATATG-CGAAATACGAACGA-GTGACCA-----TTG 88
consensus_9902#2 GATACCAGTTTATCGAACGCCAAAAATCCTAACCATATTAATGATAATGAATATAAAGAA 139
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 AGCATCTCAACCTGGATGGTTGATGGTTTTAACAAAATTGGTGAGATCACTTTTGTT-AA 179
consensus_9902#1 ATCATATCAACACAGACTCACATTACATATATCAAT-TAAGTATTAAGACATGTGTT-AT 146
consensus_9902#2 AATGTAACCGGTTCAAATTCAAGT--GATGCACAAAACTCAT-CAGTATCAAGTTCCATC 196
consensus_9902#3 -----------------------------------------------GCCCGGTACC-CC 12
consensus_9902#0 AAAAGAATCCCGTAGGTTGTAAGACAAAGGCACGGAAATGGTTCATTTCGACGTCTCATC 239
consensus_9902#1 GATGTATTCATTTCAATTGACAGTCTGAAA-AAAAATCTGAAACAATTTGAGATGTCTAC 205
* * *
consensus_9902#2 ATGTCTGATATCTCCCATAAAATAAAGCGAAATCATATTGATCCTCCTGTTGACAATGAG 256
consensus_9902#3 ATGTTTGATATCTCCCATAAAATAAAGCGAAATCATATTGATCCTCCTGTTGACAATGAG 72
consensus_9902#0 AGTTTTGTAAAAAGTAAGGAATGGATGCTAAACAACTTTG-TACAATTTTAGACTACATC 298
consensus_9902#1 AA------AGAACATTATTAAACAAAGCGCATTTACAAAA-GGCAAATGCCTATTGGTTG 258
* * ** * ** * * * * *
consensus_9902#2 GACTGCAATTTAGTACAGGTAAAACGTTTGAAAAAGTCTAA--ACAGTCAAGTAACAAGT 314
consensus_9902#3 AACTGCAATTTAGTACAGGTAAAACGTTTGAAAAAGTCTAA--ACAGTCAAGTAA----- 125
consensus_9902#0 TGTCACTACTT-GACTGGATGAAACATCCGATATGTTGTGATGAGACCCATC-AACGTCA 356
consensus_9902#1 TACAAACATTA-GTCTACATAAAGTAATTTTTAAATTCCC----CACCCATTTAATACAA 313
* * * * ** * * * ** **
consensus_9902#2 CATCGTCCC--------------------------------------------------- 323
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 TTATTTGATGTTTGATTTTTTTCAAATTGACTATGATCATTCTTGTCTTTCATTTGTTCC 416
consensus_9902#1 CGTTTCTATGTACAAAATGCGC--GCTGGGTGATAGACAGGAAAATTAGAAGTTTGGCGC 371
consensus_9902#2 ------------------------------------------------------------
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 TCTTCCTCACTTTCCTCATCTGAATAATCCACTAAGCCAATAGGAGACAATGGATCAGCT 476
consensus_9902#1 ATTTACTGAAGATGGA-ATTTAAAGAATTGACGAAG--AACCATTGGCAT---AGCAATG 425
consensus_9902#2 ------------------------------------------------------------
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 TCTATAACCTCANATGATTNTGTATTATTTGTCTCATGAGGAAGTTTATCAGAGTAGCTA 536
consensus_9902#1 TCTTAAGCATCTCAC---CTTGGATGGTTGATGGTTTTAACAAATTGGTGAGATCACTTT 482
consensus_9902#2 ------------------------------------------------------------
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 TTTTCAGAGATAACCGTTTCTTTGTGTAGGTGAAATTCTTGGGACGATGACTTGTTACTT 596
consensus_9902#1 TGTATAAAAAGACCCCCGTATGTTTGTAAGACAAGGCCGTGTAT--ATGGTTCATT--TC 538
consensus_9902#2 ------------------------------------------------------------
consensus_9902#3 ------------------------------------------------------------
consensus_9902#0 GACTGTTTAGACTTTT-TCAAACGTTTTACCTGTACTAAATTGCAGTCCTCATTGTCAAC 655
consensus_9902#1 GACGTCTCACAGTTTTGTAAAAAGTAAGGAATGGATGCTAACACTTTGTACATTTTAGAC 598
consensus_9902#2 ------------------------------
consensus_9902#3 ------------------------------
consensus_9902#0 AGGAG--GATCAATATGATCCTCGTGCCGA 683
consensus_9902#1 CACATCCGGCCACACTGGACTGGAT----- 623
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||