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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 902 fasta sequence
[TCTCCAAATTAGTCATATGTTCTTCTTCTTCTATGGAAGCATTTATTCGTGTTATCTTATCGTCAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATGGGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA-ATAGTCCTTCA-ATCAGTATTTTACCAGCCATAACAATAACAGTCCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTTACGCGCCTGGGAGACTTTCCCCTTCCA]
[+] EMBL CD145897 [TCTCCAAATTAGTCATATGTTCTTCTTCTTCTATGGAAGCATTTATTCGTGTTATCTTATCGTCAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATGGGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTCAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTNTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGC ]
[+] EMBL CD145523 [ CAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATGGGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTCTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCT ]
[+] EMBL CD066851 [ CATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAA ]
[-] EMBL CD066921 [ ATGAAAAGGGACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTCAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTA ]
[+] EMBL CD113314 [ ACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA ATAGTCCTTCA ATCAGTATTTTACCATCCATAACAATAACAG ]
[-] EMBL CD151803 [ CCATTCTTCGAACTGG TGTTTGGAAGAGCACAGCTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTGTAATGAGTCGCAAGAATCAGCAGGTAGGACATTTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGATAAGGAGATCCTTTGATGTTGCGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCGACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAAATGTTCTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGCAATGATTACAATTAGCATGGATCCTCGAAAATAGGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTGGTAACTTGGAGGTTCTCAGAGATAGTCCTTCACATCAGTATTTTACCtgg ]
[-] EMBL CD178393 [ AATCTTGTTGTTGGTGCGTCATTATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAGATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA ATAGTCCTTCA ATCAGTATTTTA CACTGAAAACACAAACCATCCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTTACGCGCCTGGGAGACTTTCCCCTTCCA]
[-] EMBL CD145440 [ ATCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCTTTGATGTTACGATGTTTGTAGATTTTGCATAGTCAGACACATCACCTGATGTATCAACAGACTCTAGATTACCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGA ATAGTCCTTCA ATCAGTATTTTA CCATAACAATAACAGg ]
consensusID : consensus_9904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence
[CAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATCTTCATGAGTGAATATATTTACATTAGCCGGTGAGGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCTTGCATAAAGTTACAATTGCAAATAGAAAACAAGCTTACCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCCTAAAATTGTCCGTCAAAAGTTACTAATATAACAAAACAGCACTGACATACTTTGATGTTACGATGTTTGTAGATTTTGCATAGCTACAGAGTAAATCATTAAAAAAACGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTNTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTT]
[+] EMBL CD201900 [CAAGTTCCAAGAACGATGCCAATGGTTTACACTTGAGATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCCACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCAAATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACATCTTCATGAGTGAATATATTTACATTAGCCGGTGAGGGAAGATCGACGAATCTTGTTGTTGGTGCGTCATTATCTTGCATAAAGTTACAATTGCAAATAGAAAACAAGCTTACCAGGACGATATTCTTTAATGAAATCGCTAAGGAGATCCCTAAAATTGTCCGTCAAAAGTTACTAATATAACAAAACAGCACTGACATACTTTGATGTTACGATGTTTGTAGATTTTGCATAGCTACAGAGTAAATCATTAAAAAAACGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGC ]
[+] EMBL CD067103 [ GTTCATGAAAAGGTACATCTAACTCGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCTACTGTCCACTTTAACCATTTTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCT ]
[-] EMBL CD143241 [ CTTTGATGTTACGATGTTCGTAGATNTNGCATAGCTACAGAGTAAATCATTAAAAAANCGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTAGATTATCACTATTGCCTTTGCTGCGTTNTAATTGTTTTGTATTTGCTGATCTGAACGGTGTCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCATAACAATAACAGGAGAATGAGTGACGACCAACAAGTT]
consensusID : consensus_9904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence
[TTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCGCATGAACGTTTTCAACAAGCAGGTTAGTCATAAAGATCTCATAATGTCCATATGGAATAACCCTTGTGGCCCAATTCTTTT]
[+] EMBL CD147218 [TTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAATAAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAACTTGGAGGTTCTCAGAATAGTCGCATGAACGTTTTCAACAAGCAGGTTAGTCATAAAGATCTCATAATGTCCATATGGAATAACCCTTGTGGCCCAATTCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9904#0 TCTCCAAATTAGTCATATGTTCTTCTTCTTCTATGGAAGCATTTATTCGTGTTATCTTAT 60
consensus_9904#1 ------------------------------------------------------------
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 CGTCAAAGAACTGTGTAAACCACTCGAGATGTTGCTTTTTGTCGTCAACACTAAAATATG 120
consensus_9904#1 ------------------------------------------------------------
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 GGTTTTTCGAAAGCCCAGTCCAAACAAGTTCCAAGAACGATGCCAATGGTTTACACTTGA 180
consensus_9904#1 ------------------------CAAGTTCCAAGAACGATGCCAATGGTTTACACTTGA 36
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 GATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACT 240
consensus_9904#1 GATGTTCCTTATTTAGGTGGTTTTCCAGAAATACATGTTCATGAAAAGGTACATCTAACT 96
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 CGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCC 300
consensus_9904#1 CGGAATTCCAATCTTGTTCATTATTAATTGGAAAACTCCACATTTTCTTTTCGACAGTCC 156
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 ACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCA 360
consensus_9904#1 ACTTTAACCATTCTTCGAACTGGTTGTTTGGAAGAGCACAACTGAAAAGTGAGGCTTCCA 216
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 AATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACAT 420
consensus_9904#1 AATTCTCAACAGCATCAAAAATGAGGTTTAATGAGTTGCAAGAATCAGCAGGTAGGACAT 276
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 TTTCATGAGTGAATATATTTACATTAGCCGGTGAAGGAAGATCGACGAATCTTGTTGTTG 480
consensus_9904#1 CTTCATGAGTGAATATATTTACATTAGCCGGTGAGGGAAGATCGACGAATCTTGTTGTTG 336
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 GTGCGTCATTATC----------------------------------------AGGACGA 500
consensus_9904#1 GTGCGTCATTATCTTGCATAAAGTTACAATTGCAAATAGAAAACAAGCTTACCAGGACGA 396
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 TATTCTTTAATGAAATCGCTAAGGAGATCC------------------------------ 530
consensus_9904#1 TATTCTTTAATGAAATCGCTAAGGAGATCCCTAAAATTGTCCGTCAAAAGTTACTAATAT 456
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 ---------------------TTTGATGTTACGATGTTTGTAGATTTTGCATAG------ 563
consensus_9904#1 AACAAAACAGCACTGACATACTTTGATGTTACGATGTTTGTAGATTTTGCATAGCTACAG 516
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 --------------------------TCAGACACATCACCTGATGTATCAACAGACTCTA 597
consensus_9904#1 AGTAAATCATTAAAAAAACGACTTACTCAGACACATCACCTGATGTATCAACAGACTCTA 576
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 GATTATCACTATTGCCTTTGCTGCGTTTTAATTGTTTTGTATTTGCTGATCTGAACGGTG 657
consensus_9904#1 GATTATCACTATTGCCTTTGCTGCGTTNTAATTGTTTTGTATTTGCTGATCTGAACGGTG 636
consensus_9904#2 ------------------------------------------------------------
consensus_9904#0 TCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAAT 717
consensus_9904#1 TCGCAGTCAAGCATTTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAAT 696
consensus_9904#2 --------------TTGAAATGATTAAAATTAGCATGGAACCTTGAAAATATGCTCGAAT 46
**********************************************
consensus_9904#0 AAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAAC 777
consensus_9904#1 AAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAAC 756
consensus_9904#2 AAAGGATAGCCATTAATAAAATACAAAGTTTGTTAGAGAACCGAATTAAGGACTAGTAAC 106
************************************************************
consensus_9904#0 TTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCAGCCATAACAATAACAGTCC 837
consensus_9904#1 TTGGAGGTTCTCAGAATAGTCCTTCAATCAGTATTTTACCA------------------- 797
consensus_9904#2 TTGGAGGTTCTCAGAATAGTCGCATGAAC-GTTTTCAACAAGCAGGTTAGTCATAAAGAT 165
********************* * * ** ** ** *
consensus_9904#0 ATAACAATA-----ACAGGAGAATGAGTGACGACCAACAAGTTACGCGCCTGGGAGACTT 892
consensus_9904#1 -TAACAATA-----ACAGGAGAATGAGTGACGACCAACAAGTT----------------- 834
consensus_9904#2 CTCATAATGTCCATATGGAATAACCCTTGTGGCCCAATTCTTTT---------------- 209
* * *** * * * ** ** * **** **
consensus_9904#0 TCCCCTTCCA 902
consensus_9904#1 ----------
consensus_9904#2 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||