cluster # 9909

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Schistosoma mansoni
cluster # 9909 cluster # 9909 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9909#0 length = 820 sequences # 9

consensus_9909#1 length = 479 sequences # 2
consensus_9909#2 length = 126 sequences # 1

consensusID : consensus_9909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 820
fasta sequence

                              [TGCGTTGAAAATGGGTCGCAAGAAGAGGAAGCAGCTAAAGCCATGGTGTTGGTATTGCAA-TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATGTCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAAATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTTTGTGTCCTCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATGCCTCCACATTTGAATTCAGTACCCTATGTACCACCACCACCGCCGNCTGCTCCTCCTGCAGCTCCTGCTTCTCCTCAACCAGCTACTCCAAATGACGAANAGTCCCCCACGTCTACTCCAAAGGCTACTTTTCCTGCCTATTCATCTCCATCGTCCAACACGAGGGCCAACGTGTCCAAAGTCCCGAAGCCTACATCAGGAGTTAATGGAGTAGTCATTGAGTTAATTCATCCCGATGAAGATTTGTCTTTGGAGGAGTTAAGAGCTGAGTTGCCGCGATACAAAACTATTGTTGAAAATGCAGCGAAAAAGATTATACCTCCCCCTATCCCAATAACTCTTGGGATTAACGACTCCCAG]

[+] EMBL AI976312             [TGCGTTGAAAATGGGTCGCAAGAAGAGGAAGCAGCTAAAGCCATGGTGTTGGTATTGCAA TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATGTCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAAATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTNTGTGTCCTCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATGCCTNCACATTTGAATTCAGTACCCTATGTACC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD153305             [           TGGGTCGCAAGAAGAGGAAGCAGCTAAAGCCATGGTGTTGGTATTGCAA TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATGTCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTATCGATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAAATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTTTGTGTCCTCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATACCTCCACATTTGAATTCAGTACCCTATGTACCACCACCACCGNCGNCTTCTCCTCCTGCAGCTCCTGCTTCTCCTCAACCAGCTACTCCAAATGACGAANAGTCCCCCACGTCTACTCCAAAGGCTACTTTTCCTGCCTATTCAT                                                                                                                                                                                                                       ]
[+] EMBL AI976528             [              GTCGCAAGAAGAGGAAGCAGCTAAAGCCATGGTGTTGGTATTGCAA TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATGTCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGACGTAGATATGATCGAACATGAAAGGCAGAAATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATGCGGCACTACCCTTTATGCAGTCTTTGTGTCCTCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATGCCTCCACATTTGAATTCAGTACCCTATGTACCACCACCACCGCCGACTGC                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AI976408             [                CGCAAGAAGAGGAAGCAGCTAAAGCCATGGTGTTGGTATTGCAA TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATGTCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAAATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTTTGTGTCCTCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATGCCTCCACATTTGAATTCAGTACCCTATGTACCACC                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD118394             [                                  CTAAAGCCATGGTGTTGGTATTGCAAGTCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATGTCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAAATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAG                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD096106             [                                      AGCCATGGTGTTGGTATTGCAA TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATGTCCTTATTGTCACAGAACACTGTTCNNNNGNCCTGGTTTGTCTATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD062114             [                                                                                                                                         AAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGTTCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCATTGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAAATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTTT                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD068121             [                                                                                                                                                                                                                                                                                 TAGATATGATCGAACATGAAAGGCAGAAA TTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTATCCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTTTGTGTCCTCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATGCCTCCACGTTTGAATTCA                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BG930958             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCCTATGTACCACCACCACCGCCG C  CTCCTCCTGCAGCTCCTGCTCCTCCTCAACCAGCTACTCCAAATGACGAAAAGTCCCCCACGTCGACTCCAAAGGCTACTTTTCCTGCCTATTCGTCTCCATCGTCCAACACGAGGGCCAACGTGTCCAAAGTCCCGAAGCCTACATCAGGAGTTAATGGAGTAGTCATTGAGTTAATTCATCCCGATGAAGATTTGTCTTTGGAGGAGTTAAGAGCTGAGTTGCCGCGATACAAAACTATTGTTGAAAATGCAGCGAAAAAGATTATACCTCCCCCTATCCCAATAACTCTTGGGATTAACGACTCCCAG]




>consensus_9909#0
TGCGTTGAAAATGGGTCGCAAGAAGAGGAAGCAGCTAAAGCCATGGTGTTGGTATTGCAA
TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATG
TCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGT
TCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCAT
TGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAA
ATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTAT
CCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTTTGTGTCC
TCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATGCCTCCACATTTGAATTCAGT
ACCCTATGTACCACCACCACCGCCGNCTGCTCCTCCTGCAGCTCCTGCTTCTCCTCAACC
AGCTACTCCAAATGACGAANAGTCCCCCACGTCTACTCCAAAGGCTACTTTTCCTGCCTA
TTCATCTCCATCGTCCAACACGAGGGCCAACGTGTCCAAAGTCCCGAAGCCTACATCAGG
AGTTAATGGAGTAGTCATTGAGTTAATTCATCCCGATGAAGATTTGTCTTTGGAGGAGTT
AAGAGCTGAGTTGCCGCGATACAAAACTATTGTTGAAAATGCAGCGAAAAAGATTATACC
TCCCCCTATCCCAATAACTCTTGGGATTAACGACTCCCAG

consensusID : consensus_9909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 479
fasta sequence

                              [GAAGTGCATGCTTCTTGAGAATATAAAACTTAGTGTATGTTTGTGTCGTGGAAAAGAATTCCGGGTTTTACATAGCTATTATTTATAATACGGCATTTTCATTAATAAGTCCTATAAAGAATGATTCTTCCCTCCTCTGTGCCTAAGCGTAAAAAGGCAGAAAAGGAACTTTTTAAAGATACTCATACCATAGAATCCCCTGAAATCATTTGTAAGTTAGTCAAATCATGCGGCAACTATTTGTTCACTGCGATGACAGAACATGGAGAGGAAGTTTTCGTACCTATTCCAGAAAGATTTCGCAATACATTCTACTTTGCTCAGGGTGGTTTCGTTGTCTGTTCACCGTTGGATAGCAAAAAGGTGAAGGGAGAAATTCGAACTGTGTTACAGAAGGATAATATTAA-GGCGCTGATTAATGAAGGACGTTGGCCGGAAACTTTTACTGTAAACATATCAAAAGAATCCTCAATAAAGAA]

[+] EMBL CD141750             [GAAGTGCATGCTTCTTGAGAATATAAAACTTAGTGTATGTTTGTGTCGTGGAAAAGAATTCCGGGTTTTACATAGCTATTATTTATAATACGGCATTTTCATTAATAAGTCCTATAAAGAATGATTCTTCCCTCCTCTGTGCCTAAGCGTAAAAAGGCAGAAAAGGAACTTTTTAAAGATACTCATACCATAGAATCCCCTGAAATCATTTGTAAGTTAGTCAAATCATGCGGCAACTATTTGTTCACTGCGATGACAGAACATGGAGAGGAAGTTTTCGTACCTATTCCAGAAAGATTTCGCAATACATTCTACTTTGCTCAGGGTGGTTTCGTTGTCTGTTCACCGTTGGATAGCAAAAAGGTGAAGGGAGAAATTCGAACTGTGTTACAGAAGGATAATATTAA GGCGCTGATTAATGA                                                         ]
[+] EMBL AA958284             [                                                                                                                                                                                                                                    TGCGGCAACTATTTGTTCACTGCGATGACAGAACATGGAGAGGAAGTTTTCGTATCTATTCCAGAAAGATTTCGCAATACATTCTACTTTGCTCAGGGTGGTTTCGTTGTCTGTTCACCGTTGGATAGCAAAAAGGTGAAGGGAGAAATTCGAACTGTGTTACAGAAGGATAATATTAAGGGCGCTGATTAATGAAGGACGTTGGCCGGAAACTTTTACTGTAAACATATCAAAAGAATCCTCAATAAAGAA]




>consensus_9909#1
GAAGTGCATGCTTCTTGAGAATATAAAACTTAGTGTATGTTTGTGTCGTGGAAAAGAATT
CCGGGTTTTACATAGCTATTATTTATAATACGGCATTTTCATTAATAAGTCCTATAAAGA
ATGATTCTTCCCTCCTCTGTGCCTAAGCGTAAAAAGGCAGAAAAGGAACTTTTTAAAGAT
ACTCATACCATAGAATCCCCTGAAATCATTTGTAAGTTAGTCAAATCATGCGGCAACTAT
TTGTTCACTGCGATGACAGAACATGGAGAGGAAGTTTTCGTACCTATTCCAGAAAGATTT
CGCAATACATTCTACTTTGCTCAGGGTGGTTTCGTTGTCTGTTCACCGTTGGATAGCAAA
AAGGTGAAGGGAGAAATTCGAACTGTGTTACAGAAGGATAATATTAAGGCGCTGATTAAT
GAAGGACGTTGGCCGGAAACTTTTACTGTAAACATATCAAAAGAATCCTCAATAAAGAA

consensusID : consensus_9909#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [ATTCGATTGATAGACTTGTCCTGGGTGGACATATGATGTGGTCTAGTGAACGATCCTATCGGTCTGCGTACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTTCGTACAG]

[+] EMBL CD133073             [ATTCGATTGATAGACTTGTCCTGGGTGGACATATGATGTGGTCTAGTGAACGATCCTATCGGTCTGCGTACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTTCGTACAG]




>consensus_9909#2
ATTCGATTGATAGACTTGTCCTGGGTGGACATATGATGTGGTCTAGTGAACGATCCTATC
GGTCTGCGTACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTTC
GTACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9909#0      TGCGTTGAAAATGGGTCGCAAGAAGAGGAAGCAGCTAAAGCCATGGTGTTGGTATTGCAA 60
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      ------------------------------------------------------------
                                                                                  

consensus_9909#0      TCGGGAGTTTGACGATGAAAAGATTCTAATCCAACATCAAAAAGCGAAACACTTCAAATG 120
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      ------------------------------------------------------------
                                                                                  

consensus_9909#0      TCCTTATTGTCACAGAAAACTGTTCACAGGTCCTGGTTTGTCGATTCACTGCAACCAAGT 180
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      ------------------------------------------------------------
                                                                                  

consensus_9909#0      TCATAAAGAGAAGCTGGATAAGATTCCAAATGCTTTGCCAAACAGAACAAGCACCGTCAT 240
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      ------------------------------------------------------------
                                                                                  

consensus_9909#0      TGATATATACGGCATGTCTGGTATTCCAGAAGTAGATATGATCGAACATGAAAGGCAGAA 300
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      ---GAAGTGCATGCTTCTTGAGAATATAAAACTTAGTGTATGTTTGTGTCGTGGAAAAGA 57
                                                                                  

consensus_9909#0      ATTTGGGTTAGAAGGTGAAGACGAGCCACCAGAGAAAATAGCCAAAGAAGACGAAAGTAT 360
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      ATTCCGGGTTTTACATAGCTATTATTTATAATACGGCATTTTCATTAATAAGTCCTATAA 117
                                                                                  

consensus_9909#0      CCCGTTTTACCCACCACCGCCTATTCATCCGGCACTACCCTTTATGCAGTCTTTGTGTCC 420
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      AGAATGATTCTTCCCTCCTCTGTGCCTAAGCGTAAAAAGGCAGAAAAGGAACTTTTTAAA 177
                                                                                  

consensus_9909#0      TCCTATGGCACCTTTCGGTCATATTGGACTTCATAACATGCCTCCACATTTGAATTCAGT 480
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      GATACTCATACCATAGAATCCCCTGAAATCATTTGTAAGTTAGTCAAATC---ATGCGGC 234
                                                                                  

consensus_9909#0      ACCCTATGTACCACCACCACCGCCGNCTGCTCCTCCTGCAGCTCCTGCTTCTCCTCAACC 540
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      AACTATTTGTTCACTGCGATGACAGAACATGGAGAGGAAGTTTTCGTACCTATTCCAGAA 294
                                                                                  

consensus_9909#0      AGCTACTCCAAATGACGAANAGTCCCCCACGTCTACTCCAAAGGCTACTTTTCCTGCCTA 600
consensus_9909#2      ------------------------------ATTCGATTGATAG---ACTTGTCCTGGGTG 27
consensus_9909#1      AGATTTCGCAATACATTCTACTTTGCTCAGGGTGGTTTCGTTG---TCTGTTCACCGTTG 351
                                                          *     *    **  **     * 

consensus_9909#0      TTCATCTC-CATCGTCCAACACGAGGGCCAACGTGTCCAAAGTCCCGAAGCCTACATCAG 659
consensus_9909#2      GACATATGATGTGGTCTAGTGAACGATCCTATCGGTCTGCG--TACGATGATACCGGTGT 85
consensus_9909#1      GATA-GCAAAAAGGTGAAGGGAGAAATTCGAACTGTGTTACAGAAGGATAATATTAAGGC 410
                         *         **  *          * *   **          **            

consensus_9909#0      GA--GTTAATGGAG--TAGTCATTGAGTTAATTCATCCCGATGAAGATTTGTCTTTGGAG 715
consensus_9909#2      GT--GTTG-TGTGG--TGTTGGCTGAGTGATTTGTTCTTCGTACAG-------------- 126
consensus_9909#1      GCTGATTAATGAAGGACGTTGGCCG-GAAACTTTTACTGTAAACATATCAAAAGAATCCT 469
                      *    **  **  *     *    * *  * **   *       *               

consensus_9909#0      GAGTTAAGAGCTGAGTTGCCGCGATACAAAACTATTGTTGAAAATGCAGCGAAAAAGATT 775
consensus_9909#2      ------------------------------------------------------------
consensus_9909#1      CAATAAAGAA-------------------------------------------------- 479
                                                                                  

consensus_9909#0      ATACCTCCCCCTATCCCAATAACTCTTGGGATTAACGACTCCCAG 820
consensus_9909#2      ---------------------------------------------
consensus_9909#1      ---------------------------------------------