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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1481 fasta sequence
[GCACATAATAACAATGAAANAGTGTCACCAGTGAAAATGAGCAATGCACCTGTAACTCATGCAGCACCTACAGGAACTAAAACAACATATTCGTTTAATGACCATTTCATAATTAAAAAACCTGATCTAAGTGAAATACCTGAACAAAAGCTTGCAATTTTATCTAATCAATTTGGTGAACTTAGTGATTCTGTGGAACGTGTTATTATTCGTATATTCGATTCAGCTTTAGTTCCAGGTGGTGCACTACGTGGTGTTGTTTATATATGTCTTAAAGAACCAATTAAATTGAATACTTTAACTGTTACCACAGAAATGATTACTAAAACAATATCTTCAGATGAGAAACAAGATATGGAGAAACGAATACCTATATCATATACTGTTTTGACAGACGACCCATCACTTAGTAAAAGAATGCCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGATCATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAANATTAAAACGTGACAGTAAATGTTCAGTTTCATAACA]
[-] EMBL CD183660 [GCACATAATAACAATGAAANAGTGTCACCAGTGAAAATGAGCAATGCACCTGTAACTCATGCAGCACCTACAGGAACTAAAACAACATATTCGTTTAATGACCATTTCATAATTAAAAAACCTGATCTAAGTGAAATACCTGAACAAAAGCTTGCAATTTTATCTAATCAATTTGGTGAACTTAGTGATTCTGTGGAACGTGTTATTATTCGTATATTCGATTCAGCTTTAGTTCCAGGTGGTGCACTACGTGGTGTTGTTTATATATGTCTTAAAGAACCAATTAAATTGAATACTTTAACTGTTACCACAGAAATGATTACTAAAACAATATCTTCAGATGAGAAACAAGATATGGAGAAACGAATACCTATATCATATACTGTTTTGACAGACGACCCATCACTTAGTAAAAGAATGCCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTC ]
[+] EMBL AI976327 [ gAGACGACCCATCACTTGGTAAAAGAATGCCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGATCATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGGGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAGTTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAA ]
[+] EMBL CD141515 [ GAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGATCATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCANAGTTCTTAGTTGTG ]
[+] EMBL AW016947 [ TTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCAT ]
[+] EMBL AI977562 [ TTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTNTTATTGAT ]
[+] EMBL CD082336 [ agactAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATCTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAANATTAAAACGTGACAGTAAATGTTCAGTTTCATAACA]
consensusID : consensus_9913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1071 fasta sequence
[GNAGGCCAGNAATTCGGCACGAGGTGAAAATTTAATCTTTCAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAATGTTAGATTCTTTTTTCCTCTTTTCTTTNACTTTTATTGTCTTGAATTGGTGTTTGTCATCTACGGTATTGTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAA-TTTCA-TCATTAAAGTTAA]
[+] EMBL CD081539 [GNAGGCCAGNAATTCGGCACGAGGTGAAAATTTAATCTTTCAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAA ]
[-] EMBL CD075363 [ TTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAAT ]
[-] EMBL CD075935 [ GGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACCCCCTTTTTTTTTAGGAGGAAAACTGAGAGAGAAAATCAAT ]
[-] EMBL SMAA43845 [ GTTCAGTCTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAATGTTAGATTCTTTTTTCCTCTTTTCTTTNACTTTTATTGTCTTGAATTGGTGTTTGTCATCTACGGTATTGTTACATTGTCCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAA TNTCA TCATaa ]
[-] EMBL CD075934 [ ATTGGTGTTTGTCATCTACGGTATTGTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAATTTTCATTCATTAAAGTTAA]
[-] EMBL CD075362 [ ATTGGTGTTTGTCATCTACGGTATTGTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAATTTTCATTCATTAAAGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9913#0 GCACATAATAACAATGAAANAGTGTCACCAGTGAAAATGAGCAATGCACCTGTAACTCAT 60
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 GCAGCACCTACAGGAACTAAAACAACATATTCGTTTAATGACCATTTCATAATTAAAAAA 120
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 CCTGATCTAAGTGAAATACCTGAACAAAAGCTTGCAATTTTATCTAATCAATTTGGTGAA 180
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 CTTAGTGATTCTGTGGAACGTGTTATTATTCGTATATTCGATTCAGCTTTAGTTCCAGGT 240
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 GGTGCACTACGTGGTGTTGTTTATATATGTCTTAAAGAACCAATTAAATTGAATACTTTA 300
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 ACTGTTACCACAGAAATGATTACTAAAACAATATCTTCAGATGAGAAACAAGATATGGAG 360
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 AAACGAATACCTATATCATATACTGTTTTGACAGACGACCCATCACTTAGTAAAAGAATG 420
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 CCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTT 480
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 AATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGAT 540
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 CATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAG 600
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 GGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCA 660
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 ATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAAT 720
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 ATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCA 780
consensus_9913#1 ------------------------------------------------------------
consensus_9913#0 GCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTA 840
consensus_9913#1 -----------------------GNAGGCCAG--NAAT-TCGGCACGAGGTGAAAATTTA 34
* * ** *** * ** * **********
consensus_9913#0 ATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATA 900
consensus_9913#1 ATCTTTCA-GAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATA 93
******** ***************************************************
consensus_9913#0 CGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGAT 960
consensus_9913#1 CGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGAT 153
************************************************************
consensus_9913#0 ACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACA 1020
consensus_9913#1 ACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACA 213
************************************************************
consensus_9913#0 GAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAA 1080
consensus_9913#1 GAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAA 273
************************************************************
consensus_9913#0 AGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTA 1140
consensus_9913#1 AGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTA 333
************************************************************
consensus_9913#0 TCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTAT 1200
consensus_9913#1 TCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTAT 393
************************************************************
consensus_9913#0 AAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATC 1260
consensus_9913#1 AAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATC 453
************************************************************
consensus_9913#0 AATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTT 1320
consensus_9913#1 AATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTT 513
************************************************************
consensus_9913#0 ATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGT 1380
consensus_9913#1 ATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGT 573
************************************************************
consensus_9913#0 TCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATAC 1440
consensus_9913#1 TCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATAC 633
************************************************************
consensus_9913#0 TTAANATTAAAACGTGACAGTAAATGTTCAGTTTCATAACA------------------- 1481
consensus_9913#1 TTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCT 693
**** ************************************
consensus_9913#0 ------------------------------------------------------------
consensus_9913#1 ACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTA 753
consensus_9913#0 ------------------------------------------------------------
consensus_9913#1 CAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAATGTTAGATTC 813
consensus_9913#0 ------------------------------------------------------------
consensus_9913#1 TTTTTTCCTCTTTTCTTTNACTTTTATTGTCTTGAATTGGTGTTTGTCATCTACGGTATT 873
consensus_9913#0 ------------------------------------------------------------
consensus_9913#1 GTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTT 933
consensus_9913#0 ------------------------------------------------------------
consensus_9913#1 TTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGT 993
consensus_9913#0 ------------------------------------------------------------
consensus_9913#1 ATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAA 1053
consensus_9913#0 ------------------
consensus_9913#1 TTTCATCATTAAAGTTAA 1071
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||