These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 306 fasta sequence [TTTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA] [+] EMBL CD121951 [TTTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ] [+] EMBL CD121955 [TTTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGTGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ] [-] EMBL CD121969 [ TTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA] [-] EMBL CD122639 [ TGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA] [+] EMBL CD113265 [ TGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTCGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ] [+] EMBL CD113216 [ TGCGTCTATCATGGTATCGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTTCGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACGTTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGT ] [-] EMBL CD118381 [ GCGTCTATCATGGTATNGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTG ] [+] EMBL CD125412 [ TCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ] consensusID : consensus_9916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 274 fasta sequence [CGGGCACAGCCCAAAAAATTACACACCTGAGCGTTATCTCGAAATGGGAAACAGAAATGGTGGTCGAGTCTGGTATCCGGGATTTCCTCGTTCAGACACTGGACACTACTATTGATGAAATATTGAACCGATATAGATCTGTATTTGACTCAGAACACTTCTCATATCTCAGTATCACCGATTTCTGAAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCCAGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT] [+] EMBL AI740379 [CGGGCACAGCCCAAAAAATTACACACCTGAGCGTTATCTCGAAATGGGAAACAGAAATGGTGGTCGAGTCTGGTATCCGGGATTTCCTCGTTCAGACACTGGACACTACTATTGATGAAATATTGAACCGATATAGATCTGTATTTGACTCAGAACACTTCTCATATCTCAGTATCACCGATTTCTGAAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCCAGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT] [+] EMBL AI764938 [ TCACCGATTTCTGCAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCCAGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT] consensusID : consensus_9916#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 220 fasta sequence [ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT] [+] EMBL CD123446 [ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT] [+] EMBL CD123422 [ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9916#0 --------------------TTTCTGTTTCCCATT-TCGAGATAACGCTCAGGT-GTGTA 38 consensus_9916#2 ---------------ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACG 45 consensus_9916#1 CGGGCACAGCCCAAAAAATTACACACCTGAGCGTTATCTCGA-AATGGGAAACAGAAATG 59 * ** * * * consensus_9916#0 ATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGG 98 consensus_9916#2 GTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACG-AGGAAGACATTGAGTAG 104 consensus_9916#1 GTGGTCGAGTCTGGTATCCGGGATTTCCTCGTTCAGACACTGGACACTACTATTGATGAA 119 * * ** ** * * * * ** * consensus_9916#0 GTTTAAATTTCCGGTACGCACCA-AGTTCAATTGATCACTGTCGTCATCGATGAAAATTA 157 consensus_9916#2 TAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTA 164 consensus_9916#1 ATATTGAA--CCGATATAGATCTGTATTTGACTCAGAACACTTCTCAT--ATCTCAGTAT 175 * ** * ** * * * ** * **** ** * * consensus_9916#0 CATTGGGTTTAGAG-----CCGTCCACACCTTGATTAGTT---TGAACGGTAGGACC--C 207 consensus_9916#2 CATTGGGTTTAGAG-----CCGTCCACACCTTGATTAGTT---TGAACGGTAGGACC--C 214 consensus_9916#1 CACCGATTTCTGAAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCC 235 ** * ** ** * * **** * * * * ** * *** ** * * * consensus_9916#0 ATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAG 267 consensus_9916#2 ATTGGT------------------------------------------------------ 220 consensus_9916#1 AGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT--------------------- 274 * * ** consensus_9916#0 ACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA 306 consensus_9916#2 --------------------------------------- consensus_9916#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||