cluster # 9916

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Schistosoma mansoni
cluster # 9916 cluster # 9916 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9916#0 length = 306 sequences # 8

consensus_9916#1 length = 274 sequences # 2
consensus_9916#2 length = 220 sequences # 2

consensusID : consensus_9916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 306
fasta sequence

                              [TTTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA]

[+] EMBL CD121951             [TTTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ]
[+] EMBL CD121955             [TTTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGTGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ]
[-] EMBL CD121969             [ TTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA]
[-] EMBL CD122639             [                                         TGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA]
[+] EMBL CD113265             [                                                       TGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTCGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ]
[+] EMBL CD113216             [                                                       TGCGTCTATCATGGTATCGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTTCGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACGTTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGT                                                                                  ]
[-] EMBL CD118381             [                                                        GCGTCTATCATGGTATNGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACCAAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTG               ]
[+] EMBL CD125412             [                                                                                                                                    TCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATC ]




>consensus_9916#0
TTTCTGTTTCCCATTTCGAGATAACGCTCAGGTGTGTAATTTGGAGGATCGTGATTGCGT
CTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGGGTTTAAATTTCCGGTACGCACC
AAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACA
CCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACG
AGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGTCGTTCACT
CAATCA

consensusID : consensus_9916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 274
fasta sequence

                              [CGGGCACAGCCCAAAAAATTACACACCTGAGCGTTATCTCGAAATGGGAAACAGAAATGGTGGTCGAGTCTGGTATCCGGGATTTCCTCGTTCAGACACTGGACACTACTATTGATGAAATATTGAACCGATATAGATCTGTATTTGACTCAGAACACTTCTCATATCTCAGTATCACCGATTTCTGAAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCCAGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT]

[+] EMBL AI740379             [CGGGCACAGCCCAAAAAATTACACACCTGAGCGTTATCTCGAAATGGGAAACAGAAATGGTGGTCGAGTCTGGTATCCGGGATTTCCTCGTTCAGACACTGGACACTACTATTGATGAAATATTGAACCGATATAGATCTGTATTTGACTCAGAACACTTCTCATATCTCAGTATCACCGATTTCTGAAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCCAGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT]
[+] EMBL AI764938             [                                                                                                                                                                              TCACCGATTTCTGCAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCCAGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT]




>consensus_9916#1
CGGGCACAGCCCAAAAAATTACACACCTGAGCGTTATCTCGAAATGGGAAACAGAAATGG
TGGTCGAGTCTGGTATCCGGGATTTCCTCGTTCAGACACTGGACACTACTATTGATGAAA
TATTGAACCGATATAGATCTGTATTTGACTCAGAACACTTCTCATATCTCAGTATCACCG
ATTTCTGAAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCCAGTTG
TACTATTCCATTCATTTGTCTAACCATTAAACAT

consensusID : consensus_9916#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 220
fasta sequence

                              [ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT]

[+] EMBL CD123446             [ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT]
[+] EMBL CD123422             [ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT]




>consensus_9916#2
ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT
ATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAGACGAGT
CTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTACATTGGGTTTAGAGCC
GTCCACACCTTGATTAGTTTGAACGGTAGGACCCATTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9916#0      --------------------TTTCTGTTTCCCATT-TCGAGATAACGCTCAGGT-GTGTA 38
consensus_9916#2      ---------------ATTACATTGGGTTTAGAGCCGTCCACACCTTGATTAGTTTGAACG 45
consensus_9916#1      CGGGCACAGCCCAAAAAATTACACACCTGAGCGTTATCTCGA-AATGGGAAACAGAAATG 59
                                                 *        **   *    *   *         

consensus_9916#0      ATTTGGAGGATCGTGATTGCGTCTATCATGGTATTGACGTCGCAGTTGGACGTTTAAAGG 98
consensus_9916#2      GTAGGACCCATTGGTATTGGTTCGGTCAGTAGTTGGTCGACG-AGGAAGACATTGAGTAG 104
consensus_9916#1      GTGGTCGAGTCTGGTATCCGGGATTTCCTCGTTCAGACACTGGACACTACTATTGATGAA 119
                       *          *  **        **        * *   * *        ** *    

consensus_9916#0      GTTTAAATTTCCGGTACGCACCA-AGTTCAATTGATCACTGTCGTCATCGATGAAAATTA 157
consensus_9916#2      TAGTAAGAAGACGAGTCTCATGACAGTTCAATTGATCACTGTCGTCATCGATGAAAATTA 164
consensus_9916#1      ATATTGAA--CCGATATAGATCTGTATTTGACTCAGAACACTTCTCAT--ATCTCAGTAT 175
                         *       **      *      **  * * *  **  *  ****  **   * *  

consensus_9916#0      CATTGGGTTTAGAG-----CCGTCCACACCTTGATTAGTT---TGAACGGTAGGACC--C 207
consensus_9916#2      CATTGGGTTTAGAG-----CCGTCCACACCTTGATTAGTT---TGAACGGTAGGACC--C 214
consensus_9916#1      CACCGATTTCTGAAATTCCCTCTTCACATCATCACAATTTACATACACGATATCATCTCC 235
                      **  *  **  **      *  * **** * * *  * **   *  *** **  * *  *

consensus_9916#0      ATTGGTATTGGTTCGGTCAGTAGTTGGTCGACGAGGAAGACATTGAGTAGTAGTAAGAAG 267
consensus_9916#2      ATTGGT------------------------------------------------------ 220
consensus_9916#1      AGTTGTACTATTCCATTCATTTGTCTAACCATTAAACAT--------------------- 274
                      * * **                                                      

consensus_9916#0      ACGAGTCTCATGACAGTTCAATTGTCGTTCACTCAATCA 306
consensus_9916#2      ---------------------------------------
consensus_9916#1      ---------------------------------------