These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1566 fasta sequence [ATGGCATTAAACTGAAGGATGTAAGGAACCTATATCNTGATGTTTATCATTAAGGGAATTAATATCATGCTTGTTGGGTCGGTCGACGAAATACCGATTTCCGAAACTCCTTGCTTGGATAATTCAAAAGTTGCTTATTCCACGGAAGACTCTATAAAACTACCACCTGGCCTCGTAAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTCGAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAACCTGACCCATTCCATAATCCTGACTTGTACGAGCCTA--TTTTTCGCTGATGATCCCGGTTCGAATAACTCTGGGTACTACGAACTTCAAGGTGTTTTGAGCCACCAAGGTAGAACAAGTACCAGTGGGCATTATGTTGCTTGGGTGAAAAAACAAGGAATGTGGTTTAAATTTGATGACGATCGTGTCAGCCAGGTTACCTCAGAAGATATTTTGCGCTTATCTGGAGGTGGTGATTGGCATTGTGCATACATACTGTTATATGGACCTCACTTCATAAGGAAGAATGCATGCAACGATCCTTCTGGAAGTACCGTATGAAGTTCATAAATGCANAACAGACTTGTATGATTATGTACGCTCTAGATAATTGACAATTTCTGTTGAATAAACCCGTTTTTTAAACGTGGAACTTTTAAGACGCCGATCAGCGAAGCTGTTCGTTGTTAAAGTTTGTCATTATTTTCTTTCCATGAAATTGTGATAAT] [-] EMBL CD180593 [ATGGCATTAAACTGAAGGATGTAAGGAACCTATATCNTGATGTTTATCATTAAGGGAATTAATATCATGCTTGTTGGGTCGGTCGACGAAATACCGATTTCCGAAACTCCTTGCTTGGATAATTCAAAAGTTGCTTATTCCACGGAAGACTCTATAAAACTACCACCTGGCCTCGTAAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTCGAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCT ] [+] EMBL AI067499 [ CCTCGTAAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTCGAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTG ] [+] EMBL AI067051 [ AAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCT ] [-] EMBL CD165772 [ AAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATGGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGC ] [+] EMBL CD184507 [ AGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATG ] [+] EMBL CD130942 [ AGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACG ] [-] EMBL CD165790 [ GATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACAACCAATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGC ] [-] EMBL CD061775 [ ATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATAAGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAACCTGACCCATTCCATAATCCTGACTTGTACGAGCCTA TTTTTCGCTGA ] [+] EMBL CD152509 [ CTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAG ] [+] EMBL CD082895 [ TTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCTATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAACCTGACCCATTCCAAAATCCTGACTTGTACGAGCCTAACTTTTTCGCTGATGATCCCGGTTCGAATAACTCTGGGTACTACGAACTTCAAGGTGTTTTGAGCCACCAAGGTAGAACAAGTACCAGTGGGCATTATGTTGCTTGGGTGAAAAAACAAGGAATGTGGTTTAAATTTGATGACGATCGTGTCAGCCAGGTTACCTCAGAAGATATTTTGCGCTTATCTGGAGGTGGTGATTGGCATTGTGCATACATACTGTTATATGGACCTCACTTCATAAGGAAGAATGCATGCAACGATCCTTCTGGAAGTACCGTATGAAGTTCATAAATGCANAACAGACTTGTATGATTATGTACGCTCTAGATAATT ] [-] EMBL CD076479 [ TGCATGCAACGATCCTTTTGGAAGTACCGTATGAAGTTCATAAATGCAAAACAGACTTGTATGATTATGTACGCTCTAGATAATTGACAATTTCTGTTGAATAAACCCGTTTTTTAAACGTGGAACTTTTAAGACGCCGATCAGCGAAGCTGTTCGTTGTTAAAGTTTGTCATTATTTTCTTTCCATGAAATTGTGATAAT] consensusID : consensus_9920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [GGGCCAGAATTCGGCACGAGGGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATNTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGAT] [+] EMBL CD077870 [GGGCCAGAATTCGGCACGAGGGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATNTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9920#0 ATGGCATTAAACTGAAGGATGTAAGGAACCTATATCNTGATGTTTATCATTAAGGGAATT 60 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 AATATCATGCTTGTTGGGTCGGTCGACGAAATACCGATTTCCGAAACTCCTTGCTTGGAT 120 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 AATTCAAAAGTTGCTTATTCCACGGAAGACTCTATAAAACTACCACCTGGCCTCGTAAAT 180 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 CTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTG 240 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 CGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGT 300 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 TCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTT 360 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 ACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCA 420 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 TCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTC 480 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 GAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAG 540 consensus_9920#1 ----------------------------------------------------------GG 2 * consensus_9920#0 ATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCT 600 consensus_9920#1 GCCAGAATTCG-GCACGAGGGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCT 61 ** * * **************************************** consensus_9920#0 CAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACT 660 consensus_9920#1 CAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACT 121 ************************************************************ consensus_9920#0 GAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATG 720 consensus_9920#1 GAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATG 181 ************************************************************ consensus_9920#0 CATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACT 780 consensus_9920#1 CATCAAGATGTAAAGTATNTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACT 241 ****************** ***************************************** consensus_9920#0 AAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGG 840 consensus_9920#1 AAGCATTCATCTTTGCTGGAT--------------------------------------- 262 ********************* consensus_9920#0 CTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATA 900 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 AATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGT 960 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 ACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGAT 1020 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 GAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAA 1080 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 CCTGACCCATTCCATAATCCTGACTTGTACGAGCCTATTTTTCGCTGATGATCCCGGTTC 1140 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 GAATAACTCTGGGTACTACGAACTTCAAGGTGTTTTGAGCCACCAAGGTAGAACAAGTAC 1200 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 CAGTGGGCATTATGTTGCTTGGGTGAAAAAACAAGGAATGTGGTTTAAATTTGATGACGA 1260 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 TCGTGTCAGCCAGGTTACCTCAGAAGATATTTTGCGCTTATCTGGAGGTGGTGATTGGCA 1320 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 TTGTGCATACATACTGTTATATGGACCTCACTTCATAAGGAAGAATGCATGCAACGATCC 1380 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 TTCTGGAAGTACCGTATGAAGTTCATAAATGCANAACAGACTTGTATGATTATGTACGCT 1440 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 CTAGATAATTGACAATTTCTGTTGAATAAACCCGTTTTTTAAACGTGGAACTTTTAAGAC 1500 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 GCCGATCAGCGAAGCTGTTCGTTGTTAAAGTTTGTCATTATTTTCTTTCCATGAAATTGT 1560 consensus_9920#1 ------------------------------------------------------------ consensus_9920#0 GATAAT 1566 consensus_9920#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||