These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1247 fasta sequence [AAGCAGAGCATACATTGAAAGAGATGAAGGCGTTGGACAAAAACGATGAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATATTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTCATTCAGATAAACGCAAATTACTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTTCTGTCAATTGCATGAAAGACATCAAGTTCAATTATCCCTTTTTTGTTTTCGATGAAAAAATTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGCTTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACTGACTCAGAACAGGTGCACGATATTCAATGTGGTCTTTGGCAGATCCTTATCCACANTTTTCAATCAGCGATATGATCAAGTACCTGTCAACCGATTTTTCTG] [-] EMBL CD113429 [AAGCAGAGCATACATTGAAAGAGATGAAGGCGTTGGACAAAAACGATGAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATATTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTCATTCAGATAAACGCAAA ] [-] EMBL CD149696 [ GACAAAAACGATGAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTCCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAA ] [+] EMBL CD186092 [ TGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATATTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTCATTCAGATAAACGCAAATTACTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTTCTGTCAATTGCATGAAAGACATCAAGTTCAATTATCCCTTTNTTGTTTTCGATGAA ] [+] EMBL CD077730 [ cgaggTGTTTGTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACTTAGGTTTCCCGGAAG ATCATTGTCTG ] [+] EMBL CD077907 [ CTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTTCTGTCAATTGCATGAAGGACATCAAGTTCAATTATCCCTTTTTTGTTTTCGATGAAAAAATTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGCTTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGCATTCCTTTC ] [+] EMBL CD154355 [ TTATCCCTTTTTTGTTTTCGATGAAAAAATTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGCTTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGANNAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACTGACTCAGAACAGGTGCACGATATTCAATGTGGTCTTTGGCAGATCCTTATCCACANTTTTCAATCAGCGATATGATCAAGTACCTGTCAACCGATTTTTCTG] [+] EMBL CD132267 [ TGATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACT ] [-] EMBL CD186572 [ GATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTTCTACTGACTCAGAACAG ] [-] EMBL CD132167 [ GATTCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAGGTTCGCTACATCCAGTAATTACCCGCTACTCTCTGGTCGGTCGCATCGAAACAAAGGATGTGAAA ] [-] EMBL CD138453 [ TCTAGTGATATAGGAATAGTTGTTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACCTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAG ] [-] EMBL CD138409 [ TCTAGTGATATAGGAATAGTTGTTATGNATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTTTTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCGATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAGCATTAAAACAAAATGTTGGTCTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAAG ] consensusID : consensus_9922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [GAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGACATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAAGTATGCATGCCTAGTATTTCTCCTCGTTTTCTTCTTTATGGTCTTGTGAAGTAATTTTTGACATACATTTAACTTTCCTTAAACACTGCTTTTTATCAC] [+] EMBL CD138092 [GAACTAACTCCTCTGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGACATTTGCTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGATGTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTGCAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTGAACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATAGCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAAGTATGCATGCCTAGTATTTCTCCTCGTTTTCTTCTTTATGGTCTTGTGAAGTAATTTTTGACATACATTTAACTTTCCTTAAACACTGCTTTTTATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9922#0 AAGCAGAGCATACATTGAAAGAGATGAAGGCGTTGGACAAAAACGATGAACTAACTCCTC 60 consensus_9922#1 -----------------------------------------------GAACTAACTCCTC 13 ************* consensus_9922#0 TGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGATATTTG 120 consensus_9922#1 TGGGATTTATTCTTGCTCGACTTCCAATCGAGCCACGTTTGGGGAAAATGTTGACATTTG 73 ****************************************************** ***** consensus_9922#0 CTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGAT 180 consensus_9922#1 CTTGTGTCTTTAATCTGGGTGGGGCAGCTGCTGTTCTCACGTCTACTGCGAGTCTTGGAT 133 ************************************************************ consensus_9922#0 GTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTG 240 consensus_9922#1 GTGACCCATTTTTATTGCCTCCGGATCATCGGAGACTCACAAATCAGCAACGGTCATTTG 193 ************************************************************ consensus_9922#0 CAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTG 300 consensus_9922#1 CAGCTGGTTATTCAAGTGATCATCTGGCTGGTTTGAATGTTTTTCAAGAGTGGACAACTG 253 ************************************************************ consensus_9922#0 AACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATA 360 consensus_9922#1 AACGTGCCCGTCGAGGTGATGAGTCAGCGGACTTATTTTGCGATCAACATGGTTTCAATA 313 ************************************************************ consensus_9922#0 GCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAACTTAGAGCTATTCTCATCAACT 420 consensus_9922#1 GCTCTGCATTAAGAGTTATTGATGATGCTGCAAACCAAGTATGCATGCCTAGTATTTCTC 373 ************************************** * * * ** consensus_9922#0 TAGGTTTCCCGGAAGAATCATTGTCTGATGCACCAGTTAATTTCAATTTGAAACACAATA 480 consensus_9922#1 CTCGTTTTCTTCT----TTATGGTCTTGTGAAGTAATT--------TTTGACATACA-TT 420 **** * * ** **** ** * * ** ***** * *** * consensus_9922#0 TTGATTGCGATATACTTAGTACTTTACTTGTGTCTGGATTGTATCCAAATATCTGTTTTC 540 consensus_9922#1 TAACTTTCCTTAAACACTGCTTTTTATCAC------------------------------ 450 * ** * ** ** * **** consensus_9922#0 ATTCAGATAAACGCAAATTACTCACAACTGAGGGTACTTTAGCACTTATACACAAAAGTT 600 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 CTGTCAATTGCATGAAAGACATCAAGTTCAATTATCCCTTTTTTGTTTTCGATGAAAAAA 660 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 TTCGTACCCAGGCCGTTTCGTGTAAAGGTCTTACAATGGTACATCCAATTCAGTTAATGC 720 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 TTTTTGGCTGCCGCTCTGCCATCTGGAGATCTGATGATTCTAGTGATATAGGAATAGTTG 780 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 TTATTGATGATTGGATTCCTTTCCGTATGAACTTCATGACTGCTGCCCGAATTTTCGCTT 840 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 TTCGTCCAGCATTGGAGGCATTACTTGTCCGAACTTGCTTACGACCAGAAGCTGTTGCCG 900 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 ATCTTCGAGAAGAAGATCAGCGTGTTATTAATGTGTTGCGTCAACTATGTTCGCCAGAAG 960 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 CATTAAAACAAAATGTTGGTTTTGATGAAGCAAATAACTTCGATTCTCCGCCGAGAAAAA 1020 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 GGTTCGCTACATCCAGTAATTACCCGTTACTCTCTGGTCGGTCGCATCGAAACAAAGGAT 1080 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 GTGAAAATTTATACTCAGAAAAACAAGGTTTTGGGCGCTATACTAATTGTCCTAATCGTT 1140 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 CTACTGACTCAGAACAGGTGCACGATATTCAATGTGGTCTTTGGCAGATCCTTATCCACA 1200 consensus_9922#1 ------------------------------------------------------------ consensus_9922#0 NTTTTCAATCAGCGATATGATCAAGTACCTGTCAACCGATTTTTCTG 1247 consensus_9922#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||