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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1310 fasta sequence
[AACCTCAACGTATTGAACAGTTTTCAAAAGCTTCAGATAAATCCTCATCTGGTTTTATAAAATGGACTACAGATGCCGAAGCATGTGAAGCTTTGGCTTTATGTAATCATCAACCCATTAAAGATGAAGAATGTACATATCCGCTTACTATTAAGTTCGCATTCGCGAGTCCTAGTTTATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA-GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGTTTGGAAGTGTACAAGAAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAGATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTGTGCCCAGGAATGATCAGGATAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCAA-TTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACTAGTAAGCAAGATGTCATTTTGGATGTTTCTAGTCCATTCCAGTTGCCTGACGGTTCTCCTTCTTTTAAGATTACAGNCAGGATCGNTATANCAGGTATACTAC]
[+] EMBL CD112204 [AACCTCAACGTATTGAACAGTTTTCAAAAGCTTCAGATAAATCCTCATCTGGTTTTATAAAATGGACTACAGATGCCGAAGCATGTGAAGCTTTGGCTTTATGTAATCATCAACCCATTAAAGATGAAGAATGTACATATCCGCTTACTATTAAGTTTGCATTCGCGAGTCCTAGTTTATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCG ]
[-] EMBL CD123647 [ AAGCATGTGAAGCTTTGGCTTTATGTAGTCATCAACCCATTAAAGATGAAGAATGTACATATCCGTTTACTATTAAGTTCGCATTCGCGAGTCGTAGTTTATCTGTTGCCCCGATTCATGTtgaaa ]
[-] EMBL CD112540 [ TCGCATTCGCGAGTCCTAGTTCATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATGTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGT ]
[-] EMBL CD112337 [ TTTATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACCGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGT ]
[+] EMBL CD112062 [ tgTGATGTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCG ]
[+] EMBL CD189802 [ CAGTTTCAGCACATCAAAACACATAGTTCATCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGTTTGGAAGTGTACAAGAAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAGATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTGTGC ]
[+] EMBL CD153902 [ ATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGTTTGGAAGTGTACAAGTAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAGATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTGTGCCCAGGAATGATCAGGATAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCAA TTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTANATGGTGCTCANAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTC ATATTTTGTG ]
[-] EMBL CD119172 [ GAATGATCAGGACAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCAATTTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTAATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACT ]
[-] EMBL CD198595 [ TTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACTAGTAAGCAAGATGTCATTTTGGATG ]
[+] EMBL CD094592 [ CCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACTAGTAAGCAAGATGTCATTTTGGATGTTTCTAGTCCATTCCAGTTGCCTGACGGTTCTCCTTCTTTTAAGATTACAGNCAGGATCGNTATANCAGGTATACTAC]
consensusID : consensus_9923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence
[CAAGGGTGTCTGCAGCCGCTAATTACAAGCTCTCCGTTACCATGTCTGATATAGGCACAGGTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATCCTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGAGTCTTATGGACGTATTCGCGACGTAACAATGATGCCTCAG-AAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATACAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCACTTTCAGCACATCAAAACACATAGGTCATCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTTACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGATATCC]
[+] EMBL CD162877 [CAAGGGTGTCTGCAGCCGCTAATTACAAGCTCTCCGTTACCATGTCTGATATAGGCACAGGTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATCCTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGAGTCTTATGGACGTATTCGCGACGTAACAATGATGCCTCAG AAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATACAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCACTTTCAGCACATCAAAACACATAGGTCATCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTTACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGATATCC]
[+] EMBL CD186043 [ TAATTACAAGCTCTCCGTTACCATGTCTGATAGAGGCACAGGTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATCCTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGAGTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9923#0 AACCTCAACGTATTGAACAGTTTTCAAAAGCTTCAGATAAATCCTCATCTGGTTTTATAA 60
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 AATGGACTACAGATGCCGAAGCATGTGAAGCTTTGGCTTTATGTAATCATCAACCCATTA 120
consensus_9923#1 -------CAAGGGTGTCTGCAGCCGCTAATTACAAGCTCTCCGTTACCAT--GTCTGATA 51
* * ** * * ** *** * ** * *** * **
consensus_9923#0 AAGATGAAGAATGTACATATCCGCTTACTATTAAGTTCGCATTCGCGAGTCCTAGTTTAT 180
consensus_9923#1 TAGGCACAG---GTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATC 108
** ** ** ** * * * * * * * * ** * *
consensus_9923#0 CTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCA 240
consensus_9923#1 CTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCA 168
** * * ************************************************
consensus_9923#0 AAGCATTTGAGTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAG 300
consensus_9923#1 AAGCATTTGAGTCTTATGGACGTATTCGCGACGTAACAATGATGCCTCAGAAAAA-CAAG 227
**************************** ************************** ****
consensus_9923#0 CTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAG 360
consensus_9923#1 CTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATACAAAGAAATCCCGAAG 287
******************************************** ***************
consensus_9923#0 TGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGC 420
consensus_9923#1 TGAAAATTCTGAATAGCCTGGTTCAAATCACTTTCAGCACATCAAAACACATAGGTCATC 347
****************************** *********************** *** *
consensus_9923#0 GAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCC 480
consensus_9923#1 GAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCC 407
************************************************************
consensus_9923#0 TTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAA 540
consensus_9923#1 TTCTGTTTACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAA 467
******* ****************************************************
consensus_9923#0 CATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAA 600
consensus_9923#1 CATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGATATCC------------- 514
****************************************** ****
consensus_9923#0 TGGTGGAGTTTGGAAGTGTACAAGAAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAG 660
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 ATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTG 720
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 TGCCCAGGAATGATCAGGATAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCA 780
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 ATTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGA 840
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 TTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATA 900
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 CCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGC 960
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 TCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATAT 1020
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 GAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCG 1080
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 TGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATC 1140
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 AGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGT 1200
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 ACGAACTAGTAAGCAAGATGTCATTTTGGATGTTTCTAGTCCATTCCAGTTGCCTGACGG 1260
consensus_9923#1 ------------------------------------------------------------
consensus_9923#0 TTCTCCTTCTTTTAAGATTACAGNCAGGATCGNTATANCAGGTATACTAC 1310
consensus_9923#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||