cluster # 9924

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Schistosoma mansoni
cluster # 9924 cluster # 9924 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9924#0 length = 1021 sequences # 10

consensus_9924#1 length = 396 sequences # 2

consensusID : consensus_9924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1021
fasta sequence

                              [AAAGTATATCAGAATTTTTGGAATAATTAATTGTCTGTACACAATATCTCAGGAAAAATGAGTTATTCGTGTTGGTCTTCATCCTCTCCAGGGCACTGTTCTAAAAGTTCAAATTGATTTGGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGTTGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC---AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAAGCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGACGTGAAACCTAGGCCTTCACGACCCTGAGGGATTTCAATAGAAACAGGATCAGCTATCCCAGTTGCATTTTTTCCCAAACCTTTACCCGGAACGTATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCAGACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATCAGAAATCCCGAAGTATCCACAATCTTGAATCCCACCTCGAAAC]

[+] EMBL CD073271             [AAAGTATATCAGAATTTTTGGAATAATTAATTGTCTGTACACAATATCTCAGGAAAAATGAGTTATTCGTGTTGGTCTTCATCCTCTCCAGGGCACTGTTCTAAAAGTTCAAATTGATTTGGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGTTGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC   AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD096898             [                                                                                              ACTGTTCTAAAAGTTCAGATTGATTTGGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGTTGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAACAGGAGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAAGCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGACGTGAAACCTAGGCCTTCACGACCCTGAGGGATTT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD196809             [                                                                                                                                                                                            ATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTTACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC   AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD140666             [                                                                                                                                                                                             TTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC   AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATT ATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD196995             [                                                                                                                                                                                             TTCTTTNGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCGGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC   AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD197092             [                                                                                                                                                                                             TTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTGACCATTATCAATGACTTCAGTTGGAACAAGATCAAC   AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD197101             [                                                                                                                                                                                             TTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGTACAAGATCAAC   AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AI067535             [                                                                                                                                                                                                                                                                                                                                                               CATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC   AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAAGCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGACGTGAAACCTAGGCCTTCACGACCCTGAGGGATTTCAATAGAAACAGGATCAGCTATCCCAGTTGCATTTTTTCCCAAACCTTTACCCGGAACGTATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTA                                                                                                                                                         ]
[+] EMBL CD156285             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTACCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCAGACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATCAGAAATCCCGAAGTATCCACAATCTTGAATCCCACCTCGAAAC]
[+] EMBL CD156419             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCAGACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATT                                                                                 ]




>consensus_9924#0
AAAGTATATCAGAATTTTTGGAATAATTAATTGTCTGTACACAATATCTCAGGAAAAATG
AGTTATTCGTGTTGGTCTTCATCCTCTCCAGGGCACTGTTCTAAAAGTTCAAATTGATTT
GGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGT
TGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTA
GCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGT
ACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCA
TTATCAATGACTTCAGTTGGAACAAGATCAACAGGCCAGAATGATTCGTGAACTGGATTT
CCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGG
TTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAAGCC
ATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGACGTG
AAACCTAGGCCTTCACGACCCTGAGGGATTTCAATAGAAACAGGATCAGCTATCCCAGTT
GCATTTTTTCCCAAACCTTTACCCGGAACGTATCCCATTTTTGAAAGTAGGCTGAAACCC
TTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTTTCC
GACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCA
TCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCAGAC
ATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATTTTATTTATATTTGACAAATC
GGAGTCATCACCCTTATCAGAAATCCCGAAGTATCCACAATCTTGAATCCCACCTCGAAA
C

consensusID : consensus_9924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 396
fasta sequence

                              [AAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGCAGAGAACTAGAGAATCTGATTACACAAGACAGCAGGTAACTACATTCCAATTGCATTTGTCATGCCTCTAATCTCTACAAGTTGCTACAAAGGTTCATATTTGGGCTTAAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTACATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCATTTAAACGTCAATGGATTTGTCTCTGAGTTTTGACTTACTGCAATCAGATAAATAAACGTGAAAACCCTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT]

[+] EMBL CD190849             [AAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGCAGAGAACTAGAGAATCTGATTACACAAGACAGCAGGTAACTACATTCCAATTGCATTTGTCATGCCTCTAATCTCTACAAGTTGCTACAAAGGTTCATATTTGGGCTTAAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTACATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCATTTAAACGTCAATGGATTTGTCTCTGAGTTTTGACTTACTGCAATCAGATAAATAAACGTGAAAACCCTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT]
[+] EMBL CD190880             [AAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGCAGAGAACTAGAGAATCTGATTACACAAGACAGCAGGTAACTACATTCCAATTGCATTTGTCATGCCTCTAATCTCTACAAGTTGCTACAAAGGTTCATATTTGGGCTTAAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTACATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCATTTAAACGTCAATGGATTTGTCTCTGAGTTTTGACTTACTGCAATCAGATAAATAAACGTGAAAACCCTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT]




>consensus_9924#1
AAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCA
CAGCAGCCGGCAGAGAACTAGAGAATCTGATTACACAAGACAGCAGGTAACTACATTCCA
ATTGCATTTGTCATGCCTCTAATCTCTACAAGTTGCTACAAAGGTTCATATTTGGGCTTA
AATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTAC
ATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCATTTAAACGTC
AATGGATTTGTCTCTGAGTTTTGACTTACTGCAATCAGATAAATAAACGTGAAAACCCTA
GAATTCTCAAGGATTGAAATTGGATGTGTGACAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9924#0      AAAGTATATCAGAATTTTTGGAATAATTAATTGTCTGTACACAATATCTCAGGAAAAATG 60
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      AGTTATTCGTGTTGGTCTTCATCCTCTCCAGGGCACTGTTCTAAAAGTTCAAATTGATTT 120
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      GGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGT 180
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTA 240
consensus_9924#1      ------------------------------------------------AAATTTTATTTA 12
                                                                       * *    ****

consensus_9924#0      GCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGT 300
consensus_9924#1      TATTTGACAA-ATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGC 71
                        *    **  *** * *   **  * **    *    *   **   ** * ***   * 

consensus_9924#0      ACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCA 360
consensus_9924#1      AGAGAACTAGAGAATCTGATT-ACACAAGACAGC---AGGTAACTACATTCCAATTGCAT 127
                      * ** *     *  * * *   **  ** **      *  * * *      ** ** *  

consensus_9924#0      TTATCAATGACTTCAGTTGGAACAAGATCAACAGGCCAGAATGATTCGTGAACTGGATTT 420
consensus_9924#1      TTGTCA-TGCCTCTAATCTCTACAAGTT------GCTACAAAGGTTCAT-ATTTGGGCTT 179
                      ** *** ** **  * *    ***** *      ** * ** * *** * *  ***  **

consensus_9924#0      CCGATAAGT---TCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGT 477
consensus_9924#1      AAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTA 239
                          ****    *  **   *   **  * *** ** * **     *       * **  

consensus_9924#0      CGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAA 537
consensus_9924#1      CATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCAT--TTAAAC 297
                      *  ***         *    ***  *       ***   * *  * ******  **  * 

consensus_9924#0      GCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGAC 597
consensus_9924#1      GTCAATGG-ATTTGTC--TCTGAGTTTTGACTTACTGCAATCAGATAAAT------AAAC 348
                      * ** * * ******   **   *****  ** * *   *** * * * *      * **

consensus_9924#0      GTGAAACCTAGGCCTTCACGACCCTGAGGGATTTCAATAGAAACAGGATCAGCTATCCCA 657
consensus_9924#1      GTGAAAACC------CTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT------ 396
                      ****** *         *  *  ** * *****  *** * *   *   **  *      

consensus_9924#0      GTTGCATTTTTTCCCAAACCTTTACCCGGAACGTATCCCATTTTTGAAAGTAGGCTGAAA 717
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      CCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTT 777
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGA 837
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      GCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCA 897
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      GACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATTTTATTTATATTTGACAA 957
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      ATCGGAGTCATCACCCTTATCAGAAATCCCGAAGTATCCACAATCTTGAATCCCACCTCG 1017
consensus_9924#1      ------------------------------------------------------------
                                                                                  

consensus_9924#0      AAAC 1021
consensus_9924#1      ----