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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1377 fasta sequence
[AGACGTGGTGGGTAGCAACTTACAATCTTTGGATATTGTTAACGTCGTCACTCCAAATCCTTTAGATAATTAGTGCCTGAGGAGTCAGTGTATTTGATGTTTGATGGANAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTTGTGAAAAATCTTCAAGACCTTCTGCCGACACTGGTGTTATC-CTCA-CGGTCATCATGATCAAGAAAAAAGAG-TCGTAGGGAAATTGCTAATAGCAATGAGCGGCGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT-CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAAAACTCCTTAACCGCCCTATTCCTCACAAATACTTCCACAGGCCTCAAGTTGTGGTTAATAGTTCCCACTGATTTCCTATTTCTTTTAGTTTCGCATTTTCAACTCCTAACTTTGTCTGGATTAATCCGCATGAACTCTGCTTGCGGAATTTTTCTTAGCACGGTGTATATACGTATATTTGGGGTTTATCATGTTATTTCCCTGGAACCTAACTATATATTTTGTGATCTTTTATATCTTTAGTTTTTCGTTTGTTTTGGGTGTGGTTTACTAAGTTTTAAGCCGTCTAAGGTTCTTAATGTCTAGCACTTTTTGTACTTTGTAAAATAATGGTTTGTTTTCTGTTGTGTAAAACTGATC]
[-] EMBL CD183350 [AGACGTGGTGGGTAGCAACTTACAATCTTTGGATATTGTTAACGTCGTCACTCCAAATCCTTTAGATAATTAGTGCCTGAGGAGTCAGTGTATTTGATGTTTGATGGANAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTTGTGAAAAATCTTCAAGACCTTCTGCCGACACTGGTGTTATCGCTCA CGGTCATCATGATCAAGAAAAAAGAGTTCGTAGGGAAATTGCTAATAGCAATGAGCGGCGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCGGAAAACGCAGATCTGATGATTTA ]
[+] EMBL CD061842 [ C CCCATCGGGAATCATGATCAAGAAAAAAGAG TCGTAGGGAAATTGCTAATAGCAATGAGCGACGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCA ]
[+] EMBL CD200626 [ CTGCGGATCCTATTGCCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAATATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTAT ]
[-] EMBL CD095974 [ TATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTACCGACAATCAGCTGGTTNGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTGACTTCCAGAAAACGCAGATCTGATGATTTAA GACCGGCCGGACTGTATTCGGAATCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGT ]
[+] EMBL CD127879 [ aagtcAAATGGTAGGTCTGATGATTT TTTGACCGGCCGGACTGTATTCGGACTCGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAGAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCA ]
[+] EMBL CD060577 [ CGACGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAGTTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGCCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTA CCTATTGTAGCA ]
[-] EMBL CD130899 [ AGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTCTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCGCTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAAT ]
[+] EMBL CD133671 [ ATTCATCTCGCACGAATTACGTCCACTTTTCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGAAGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCCGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAA TATCACGGATATGCCTATGTTGGTGCCCAAACATCTAATGAAAAGTCTAACAATTTGTTTGCTGGTTCCCTGCTGGCTACTCCAGAATGCGGAAA TAATCCCg ]
[-] EMBL CD128114 [ ATCCCCACTTACATCTTTCAATAGTAGCACATCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAACATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAA ]
[+] EMBL BG932354 [ aaGGTGCTCTTAACGTGTCTCCACAACCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGGCATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAAAAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTAT CGGAAATTAATCCCTCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAAAACTCCTTAACCGCCCTATTCCTCACAAATACT ]
[-] EMBL CD202825 [ CTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCAAAACTCCTTAACCGCCCTATTCCTCACAAATACCTCCACAGGCCTCAAGTTGTGGTTAATAGTTCCCACTGATTTCCTATTTCTTTTAGTTTCGCATTTTCAACTCCTAACTTTGTCTGGATTAATCCGCATGAACTCTGCTTGCGGAATTTTTCTTAGCACGGTGTATATACGTATATTTGGGGTTTATCATGTTATTTCCCTGGAACCTAACTATATATTTTGTGATCTTTTATATCTTTAGTTTTTCGTTTGTTTTGGGTGTGGTTTACTAAGTTTTAAGCCGTCTAAGGTTCTTAATGTCTAGCACTTTTTGTACTTTGTAAAATAATGGTTTGTTTTCTGTTGTGTAAAACTGATC]
consensusID : consensus_9926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[ATATTGTTAACGTCGTCACTCCAAATCCTCTAGATAATTAGTGCCTGAGGAGTCAGTGTATNTGATGTNTGATGGAAAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTNNNNAAAAATCTTCAAGGTAAGCTTCCTCACGTGACGCCATATTGCTTTTTACTTATGGTCTAGAATTTTTGTATACAGGCTCCCTAATACATTTTTTACTTGTTTTGATATGCTTGTTGATTATATTAAGTGATTGTATGTTAAGTCGATTGTGATTTTTGTCGAAGTCTTAAAATTCTTTGGCTGTCTATTCCTTATCTTATACACAGACCTTCTGCCGACACTGGTGTTATCGCTCACGGTCATCATGATCAAGAAAAAAGAGTTCGTAGGGAAATTGCTAATAGCAATGAGCGACGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTG]
[-] EMBL CD088583 [ATATTGTTAACGTCGTCACTCCAAATCCTCTAGATAATTAGTGCCTGAGGAGTCAGTGTATNTGATGTNTGATGGAAAATAAGCTCTTCGTCTCTGAAATGCCAGTTGATGGTNNNNAAAAATCTTCAAGGTAAGCTTCCTCACGTGACGCCATATTGCTTTTTACTTATGGTCTAGAATTTTTGTATACAGGCTCCCTAATACATTTTTTACTTGTTTTGATATGCTTGTTGATTATATTAAGTGATTGTATGTTAAGTCGATTGTGATTTTTGTCGAAGTCTTAAAATTCTTTGGCTGTCTATTCCTTATCTTATACACAGACCTTCTGCCGACACTGGTGTTATCGCTCACGGTCATCATGATCAAGAAAAAAGAGTTCGTAGGGAAATTGCTAATAGCAATGAGCGACGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9926#0 AGACGTGGTGGGTAGCAACTTACAATCTTTGGATATTGTTAACGTCGTCACTCCAAATCC 60
consensus_9926#1 --------------------------------ATATTGTTAACGTCGTCACTCCAAATCC 28
****************************
consensus_9926#0 TTTAGATAATTAGTGCCTGAGGAGTCAGTGTATTTGATGTTTGATGGANAATAAGCTCTT 120
consensus_9926#1 TCTAGATAATTAGTGCCTGAGGAGTCAGTGTATNTGATGTNTGATGGAAAATAAGCTCTT 88
* ******************************* ****** ******* ***********
consensus_9926#0 CGTCTCTGAAATGCCAGTTGATGGTTGTGAAAAATCTTCAAGACCTTCTGCCGACACTGG 180
consensus_9926#1 CGTCTCTGAAATGCCAGTTGATGGTNNNNAAAAATCTTCAAGGTAAGCTTCCTCACGTGA 148
************************* ************* ** ** **
consensus_9926#0 TGTTATCCTCACGGTCA-TCATGATCAAGAAAAAAGAGTCGTAGGGAAATTGCTAATAGC 239
consensus_9926#1 CGCCATATTGCTTTTTACTTATGGTCTAGAATTTTTGTATACAGGCTCCCTAATACATTT 208
* ** * * * * *** ** **** *** * **
consensus_9926#0 AATGAGCGGCGGCGGATGCAAAGTATCAACGCTGGGTTCGACTCTCTGCGGATCCTATTG 299
consensus_9926#1 TTTACTTGTTTTGATATGCTTGTTGATTATATTAAGT--GATTGTATGTTAAGTCGATTG 266
* * **** * * * ** ** * * ** * * ****
consensus_9926#0 CCATCCATATCAGACGGAGAAAAAATGAGCAAGGCGACAATTTTACAACTGACTGCCAAA 359
consensus_9926#1 TGATTTTTGTCGAA--GTCTTAAAATTCTTTGGCTGTCTATTCCTTATCTTATACACAGA 324
** * ** * * ***** * * * *** * ** * ** *
consensus_9926#0 ---TATATCAACACATTACTCATGCGCGTTAGTTTGCTGGAAAGCGAAGTAGCTGTGTAC 416
consensus_9926#1 CCTTCTGCCGACACTGGTGTTATCGCTCACGGTCATCATGATCAAGAAAAAAGAGTTCGT 384
* * * **** * ** ** * ** *** * **
consensus_9926#0 CGACAATCAGCTGGTTTGCAACTAAATCCAGTCTCGTCAGAGTTGTCTGGTTCATCCGTG 476
consensus_9926#1 AGGGAAATTGCTAATA-GCAATGAGCGACGGCGGATGCAAAGTA-------TCAACGCTG 436
* ** *** * **** * * * ** *** *** * **
consensus_9926#0 ACTTCCAGAAAACGCAGATCTGATGATTTAAAGGACCGGCCGGACTGTATTCGGAATCGA 536
consensus_9926#1 GGTTCGACTCTCTGCGGATCCTATTG---------------------------------- 462
*** * ** **** **
consensus_9926#0 CGTCGACGAGTTGAGATCGAAGGGATATACGATTCATCTCGCACGAATTACGTCCACTTT 596
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TCTCCTGAAAGCACCGATACACACCAGTCATCCCCACTTACATCTTTCAATAGTAGCACA 656
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TCGATTTGTTCAGCATCTCCTCAGCCTGACAGCACAAGCAGTACTGCTGCACGACTTGAA 716
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 CATTTGGTGATGGCAATTGAGCAGATTGAGGGGGGTGGTGCTCTTAACGTGTCTCCACAA 776
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 CCTGGAAGTCATGATGAGAGCTTCTCCACTGGAGACCACTCACCTCCGGAAACATACTGG 836
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 CATAGTCCACAAGAAAATTATCACGGATATGCCTATGTTGATGCCCAAACATCTAATCAA 896
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 AAGTCTAACAATTTGTTTGCTGATTCCCTCCTGCTTACTCCAGTATCGGAAATTAATCCC 956
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TCTTTAAATACTAGTGACAATGTCCAGACTCACAATACTGAGGATTACCCTATTGTAGCA 1016
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 AAACTCCTTAACCGCCCTATTCCTCACAAATACTTCCACAGGCCTCAAGTTGTGGTTAAT 1076
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 AGTTCCCACTGATTTCCTATTTCTTTTAGTTTCGCATTTTCAACTCCTAACTTTGTCTGG 1136
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 ATTAATCCGCATGAACTCTGCTTGCGGAATTTTTCTTAGCACGGTGTATATACGTATATT 1196
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TGGGGTTTATCATGTTATTTCCCTGGAACCTAACTATATATTTTGTGATCTTTTATATCT 1256
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TTAGTTTTTCGTTTGTTTTGGGTGTGGTTTACTAAGTTTTAAGCCGTCTAAGGTTCTTAA 1316
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TGTCTAGCACTTTTTGTACTTTGTAAAATAATGGTTTGTTTTCTGTTGTGTAAAACTGAT 1376
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 C 1377
consensus_9926#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||