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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 919 fasta sequence
[ACGAGGCCAAGAATTTGGCACGAGGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTTTAGACAAATCTCCAACATACGAAGATCCTCCGATTTTGGTTTCTACTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAAGATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATGAAAAGC-AGCCAGCTGAAGAAGAGATGTTNTATTGATGATTGNTAAANTGCAGT-CCACTTCATCTTAGTCTGTTTTTAT--AAGNNTCTC-TTGC-TACTCTGNA-TCATACATTATATTTTACTGGATGNCTCTCATTGNTGNGAAATTCTTCTTTCATGTATGTTGNTTCCAACAAACCTGATATAGAAGTAGCGTACTAACTTGTGATAAATT]
[+] EMBL CD079524 [ACGAGGCCAAGAATTTGGCACGAGGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTTTAGACAAATCTCCAACATACGAAGATCCTCCGATTTTGGTTTCTACTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACANAGTCAACGGAAGATACTACGCANACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACANATTATGAAAAGC AGCCAGCTGAAGAAGAGATGTTNTATTGATGATTGNTAAANTGCAGT CCACTTCATCTTAGTCTGTTTTTAT AAGNNTCTC TTGC TACTCTGNA TCATACATTATATTTTACTGGATGNCTCTCATTGNTGNGAAATTCTTCTTTCATGTATGTTGNTTCCAACAAACCTGATATAGAAGTAGCGTACTAACTTGTGATAAATT]
[+] EMBL CD077746 [ AGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTTTAGA ]
[-] EMBL CD129699 [ TGGTTTCTACTATTCAAAGTAAAGAAAGTGAAGTATCCCGAGAAATCATCTATTATACCACTAGAATGAATTTATGGAGATCAGGATTCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAATGCGCGACTAGTGCCAATGATGATGAGAAAACTATTCCTAGAACTCTTAATACAGATGAAGAGCCTACAACAAAGTCACCGGAAGATACTACGCAAACTCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATGAAAGCC CGCCAG ]
[-] EMBL CD129717 [ CTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAAGATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATG AAAGCAAGCCA ]
[+] EMBL CD134965 [ GTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAAGATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATG AAAGCAAGCCAGCTGAAGAAGAGATGTTTTATTGATGATTGTTAAA TGCAGTCCCACTTCATCTTAGTCTGTTTTTATTAAAGTTTCTCTTTGCTTACTCTGTATTCATACATTAata ]
consensusID : consensus_9927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 465 fasta sequence
[GTTAATGATGATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAACCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCTACAGAATTGATTGTGTCACAATCTAAATTGGAGAAGTTACGTGAAGCAGCTAAAGACCAAGCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACAAATGATATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAAACATTTGGATAATGTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTCATCAGACTAT]
[+] EMBL CD167489 [GTTAATGATGATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAACCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCTACAGAATTGATTGTGTCACAATCTAAATTGGAGAAGTTACGTGAAGCAGCTAAAGACCAAGCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACAAATGATATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAca ]
[+] EMBL CD167487 [ GATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAACCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCTAAAGAATTGATTGTGTCACAATCTAAATTGGAGATGTTACGTGAAGCAGCTAAAGAGAAAGCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACAAATGATATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAAACATTTGGATAATGTA ]
[-] EMBL CD167524 [ TGATATGATGTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACGTAAACATTTGGATAATGTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTT ]
[-] EMBL CD167490 [ ATGGTAGTGAAGAGGAACTTAAACATTTGGATAATGTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCC AATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTCATCAGACTAT]
consensusID : consensus_9927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 364 fasta sequence
[ACCTTCGCTGTTGATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTCTAGACAAATCTCCAACAGCGAAGGTA]
[-] EMBL CD145294 [ACCTTCGCTGTTGATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTCTAGACAAATCTCCAACAGCGAAGGTA]
[+] EMBL CD202302 [ ATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTCTA ]
consensusID : consensus_9927#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence
[GAGTACCCCTGGGGATTTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAA]
[+] EMBL CD083647 [GAGTACCCCTGGGGATTTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9927#0 ------------------------------------------------------------
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 GTTAATGATGATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAA 60
consensus_9927#0 ----ACGAGGCCAAGAATTTGGCACGAGGGTTTAAAGAACGATTATGATATCAGAATAAA 56
consensus_9927#2 ----------------------------------------ACCTTCGCTGTTG--ATAAA 18
consensus_9927#3 ------------------------------------GAGTACCCCTGGGGATTTATCCCG 24
consensus_9927#1 CCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCT 120
consensus_9927#0 AGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGA--AATTAAACATCGT 114
consensus_9927#2 AGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGA--AATTAAACATCGT 76
consensus_9927#3 AGAAATC-AACTATTA-----TACCACT-AAAATGAATTTATGGA--GATCAGAAATCGC 75
consensus_9927#1 ACAGAATTGATTGTGTCACAATCTAAATTGGAGAAGTTACGTGAAGCAGCTAAAGACCAA 180
* * * * * * * * * * * * * * *
consensus_9927#0 GCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAA 174
consensus_9927#2 GCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAA 136
consensus_9927#3 GCG-------TATGTTTGCTGAACAAAGCAAA-ATGTATACTACAGATCCACTAAAAGAT 127
consensus_9927#1 GCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACA---AATGAT 237
** * * ** * * * ** ** **
consensus_9927#0 ATGGTT--GAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAAC 232
consensus_9927#2 ATGGTT--GAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAAC 194
consensus_9927#3 AAAGCT--CAA------------------------------------------------- 136
consensus_9927#1 ATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAAACATTTGGATAAT 297
* * *
consensus_9927#0 A----ACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGG 288
consensus_9927#2 A----ACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGG 250
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 GTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTA--AAGAACG 355
consensus_9927#0 AAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAG 348
consensus_9927#2 AAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAG 310
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ATTATGATATCAGAATAAAAGAAATCCAAATCGTTAATTATTCCCATTCAGAGAAGATCT 415
consensus_9927#0 ACTTGGTTAGCTGAATCTACCGAAGTTTTAGACAAATCTCCAACATACGAAGATCCTCCG 408
consensus_9927#2 ACTTGGTTAGCTGAATCTACCGAAGTTCTAGACAAATCTCCAACA-GCGAAGGTA----- 364
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ACTGAAATTAAACATCGTGCGAAAGCAATAC-TATCGTTTCATCAGACTAT--------- 465
consensus_9927#0 ATTTTGGTTTCTACTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTAT 468
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 ACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAA 528
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 ATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGAT 588
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 GAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAA 648
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 GATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTAT 708
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 GAAAAGCAGCCAGCTGAAGAAGAGATGTTNTATTGATGATTGNTAAANTGCAGTCCACTT 768
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 CATCTTAGTCTGTTTTTATAAGNNTCTCTTGCTACTCTGNATCATACATTATATTTTACT 828
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 GGATGNCTCTCATTGNTGNGAAATTCTTCTTTCATGTATGTTGNTTCCAACAAACCTGAT 888
consensus_9927#2 ------------------------------------------------------------
consensus_9927#3 ------------------------------------------------------------
consensus_9927#1 ------------------------------------------------------------
consensus_9927#0 ATAGAAGTAGCGTACTAACTTGTGATAAATT 919
consensus_9927#2 -------------------------------
consensus_9927#3 -------------------------------
consensus_9927#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||