These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 919 fasta sequence [ACGAGGCCAAGAATTTGGCACGAGGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTTTAGACAAATCTCCAACATACGAAGATCCTCCGATTTTGGTTTCTACTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAAGATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATGAAAAGC-AGCCAGCTGAAGAAGAGATGTTNTATTGATGATTGNTAAANTGCAGT-CCACTTCATCTTAGTCTGTTTTTAT--AAGNNTCTC-TTGC-TACTCTGNA-TCATACATTATATTTTACTGGATGNCTCTCATTGNTGNGAAATTCTTCTTTCATGTATGTTGNTTCCAACAAACCTGATATAGAAGTAGCGTACTAACTTGTGATAAATT] [+] EMBL CD079524 [ACGAGGCCAAGAATTTGGCACGAGGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTTTAGACAAATCTCCAACATACGAAGATCCTCCGATTTTGGTTTCTACTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACANAGTCAACGGAAGATACTACGCANACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACANATTATGAAAAGC AGCCAGCTGAAGAAGAGATGTTNTATTGATGATTGNTAAANTGCAGT CCACTTCATCTTAGTCTGTTTTTAT AAGNNTCTC TTGC TACTCTGNA TCATACATTATATTTTACTGGATGNCTCTCATTGNTGNGAAATTCTTCTTTCATGTATGTTGNTTCCAACAAACCTGATATAGAAGTAGCGTACTAACTTGTGATAAATT] [+] EMBL CD077746 [ AGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTTTAGA ] [-] EMBL CD129699 [ TGGTTTCTACTATTCAAAGTAAAGAAAGTGAAGTATCCCGAGAAATCATCTATTATACCACTAGAATGAATTTATGGAGATCAGGATTCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAATGCGCGACTAGTGCCAATGATGATGAGAAAACTATTCCTAGAACTCTTAATACAGATGAAGAGCCTACAACAAAGTCACCGGAAGATACTACGCAAACTCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATGAAAGCC CGCCAG ] [-] EMBL CD129717 [ CTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAAGATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATG AAAGCAAGCCA ] [+] EMBL CD134965 [ GTACCAATGATGATGAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAAGATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTATG AAAGCAAGCCAGCTGAAGAAGAGATGTTTTATTGATGATTGTTAAA TGCAGTCCCACTTCATCTTAGTCTGTTTTTATTAAAGTTTCTCTTTGCTTACTCTGTATTCATACATTAata ] consensusID : consensus_9927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 465 fasta sequence [GTTAATGATGATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAACCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCTACAGAATTGATTGTGTCACAATCTAAATTGGAGAAGTTACGTGAAGCAGCTAAAGACCAAGCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACAAATGATATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAAACATTTGGATAATGTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTCATCAGACTAT] [+] EMBL CD167489 [GTTAATGATGATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAACCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCTACAGAATTGATTGTGTCACAATCTAAATTGGAGAAGTTACGTGAAGCAGCTAAAGACCAAGCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACAAATGATATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAca ] [+] EMBL CD167487 [ GATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAACCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCTAAAGAATTGATTGTGTCACAATCTAAATTGGAGATGTTACGTGAAGCAGCTAAAGAGAAAGCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACAAATGATATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAAACATTTGGATAATGTA ] [-] EMBL CD167524 [ TGATATGATGTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACGTAAACATTTGGATAATGTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCCAAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTT ] [-] EMBL CD167490 [ ATGGTAGTGAAGAGGAACTTAAACATTTGGATAATGTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTAAAGAACGATTATGATATCAGAATAAAAGAAATCC AATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTCATCAGACTAT] consensusID : consensus_9927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 364 fasta sequence [ACCTTCGCTGTTGATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTCTAGACAAATCTCCAACAGCGAAGGTA] [-] EMBL CD145294 [ACCTTCGCTGTTGATAAAAGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTCTAGACAAATCTCCAACAGCGAAGGTA] [+] EMBL CD202302 [ ATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGAAATTAAACATCGTGCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAAATGGTTGAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAACAACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGGAAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAGACTTGGTTAGCTGAATCTACCGAAGTTCTA ] consensusID : consensus_9927#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [GAGTACCCCTGGGGATTTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAA] [+] EMBL CD083647 [GAGTACCCCTGGGGATTTATCCCGAGAAATCAACTATTATACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAAATGTATACTACAGATCCACTAAAAGATAAAGCTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9927#0 ------------------------------------------------------------ consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 GTTAATGATGATGACGTATCTGGGAAAGATCAATTGACAGTAGATGTGAAGTCTACAGAA 60 consensus_9927#0 ----ACGAGGCCAAGAATTTGGCACGAGGGTTTAAAGAACGATTATGATATCAGAATAAA 56 consensus_9927#2 ----------------------------------------ACCTTCGCTGTTG--ATAAA 18 consensus_9927#3 ------------------------------------GAGTACCCCTGGGGATTTATCCCG 24 consensus_9927#1 CCATTTTTTGAACCTATTGACTATGAAGCTGTTTATTTAGATTTTCCTGACTTAACTGCT 120 consensus_9927#0 AGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGA--AATTAAACATCGT 114 consensus_9927#2 AGAAATCCAATCGTTAATTATTCCCATTCAGAGAAGATCTACTGA--AATTAAACATCGT 76 consensus_9927#3 AGAAATC-AACTATTA-----TACCACT-AAAATGAATTTATGGA--GATCAGAAATCGC 75 consensus_9927#1 ACAGAATTGATTGTGTCACAATCTAAATTGGAGAAGTTACGTGAAGCAGCTAAAGACCAA 180 * * * * * * * * * * * * * * * consensus_9927#0 GCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAA 174 consensus_9927#2 GCGAAAGCAATACTATCGTTTAATAAAACAATCGAATTAGCCCAAAAAACATTGAATGAA 136 consensus_9927#3 GCG-------TATGTTTGCTGAACAAAGCAAA-ATGTATACTACAGATCCACTAAAAGAT 127 consensus_9927#1 GCTGCTTTGGACCAATCTATTAATCTACTTGAAACCTTATTGATTAATACA---AATGAT 237 ** * * ** * * * ** ** ** consensus_9927#0 ATGGTT--GAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAAC 232 consensus_9927#2 ATGGTT--GAGTTATCAAAACTGTTTTCGCAAACATTAAGAACCATTCCATCTGAACAAC 194 consensus_9927#3 AAAGCT--CAA------------------------------------------------- 136 consensus_9927#1 ATGATTTCAACTGATTACAGGAAATATGGTAGTGAAGAGGAACTTAAACATTTGGATAAT 297 * * * consensus_9927#0 A----ACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGG 288 consensus_9927#2 A----ACAAAATGCATCAAGTAATAGCTCTGAACAAACTTCAGAAGAATCATCACCATGG 250 consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 GTATTACAAACTGCATCCAGTTGGTTTGATGAACAAGGTCATGATGGTTTA--AAGAACG 355 consensus_9927#0 AAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAG 348 consensus_9927#2 AAAAATATCTTCAATGAAGTTGAAATTGATACACTAAGAAATAAAATGGGTGAATCAAAG 310 consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ATTATGATATCAGAATAAAAGAAATCCAAATCGTTAATTATTCCCATTCAGAGAAGATCT 415 consensus_9927#0 ACTTGGTTAGCTGAATCTACCGAAGTTTTAGACAAATCTCCAACATACGAAGATCCTCCG 408 consensus_9927#2 ACTTGGTTAGCTGAATCTACCGAAGTTCTAGACAAATCTCCAACA-GCGAAGGTA----- 364 consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ACTGAAATTAAACATCGTGCGAAAGCAATAC-TATCGTTTCATCAGACTAT--------- 465 consensus_9927#0 ATTTTGGTTTCTACTATTCAAAGTAAAGAAAGTGAATTATCCCGAGAAATCAACTATTAT 468 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 ACCACTAAAATGAATTTATGGAGATCAGAAATCGCGCGTATGTTTGCTGAACAAAGCAAA 528 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 ATGTATACTACAGATCCACTAAAAGATAAAGCTCAAACCCCAACTAGTACCAATGATGAT 588 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 GAGAAAACTATTCCTAGAACTCTTAAAACAGATGAAGAGCCTACAACAAAGTCAACGGAA 648 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 GATACTACGCAAACCCCAAGACCGGAGTTGTAATTTCACGTACAATTCCAAACAAATTAT 708 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 GAAAAGCAGCCAGCTGAAGAAGAGATGTTNTATTGATGATTGNTAAANTGCAGTCCACTT 768 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 CATCTTAGTCTGTTTTTATAAGNNTCTCTTGCTACTCTGNATCATACATTATATTTTACT 828 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 GGATGNCTCTCATTGNTGNGAAATTCTTCTTTCATGTATGTTGNTTCCAACAAACCTGAT 888 consensus_9927#2 ------------------------------------------------------------ consensus_9927#3 ------------------------------------------------------------ consensus_9927#1 ------------------------------------------------------------ consensus_9927#0 ATAGAAGTAGCGTACTAACTTGTGATAAATT 919 consensus_9927#2 ------------------------------- consensus_9927#3 ------------------------------- consensus_9927#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||