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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1815 fasta sequence
[ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGTATTGTCGTCCATCTAGAAGGTCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATAGAGAGAAATTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTGCCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTGGAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAGGGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTGGATGGATACCTAGACGTGAAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTTACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATGAAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCTTTAAAGTTCCATTCTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTTTCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAAACATCAACGATACTGTCACACCTGTGCTTGGTACAGGATTTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATAT--AAAAAATAT--AAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAAGAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGGACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTTTATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGTTTCCAGTTGGTGCAACCGTAATTACCAAGATCGTTGAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGAAAATGTTTGACATATACAATGCT-AAAGAATATTA-TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTT-AAAG-TGAAGGATTGGATAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA-TTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTT-GAAATTGTCTTATCCTCCTGGTTGGTGAACAGTATAAATACAAGGAAAGAGAATATATCTAGTTCTTTAAAACAGAAACAACAAATATCGTCTGTTGTACTGGCATGTCGGAGTCGTGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGAGTGGGAATGCTTGGGTTGTTGGTCAACGAAATAAAATAACTCTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGC]
[+] EMBL CD139595 [ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGTATTGTCGTCCATCTAGAAGGTCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATAGAGAGAAATTTAAAGCAGGAAAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTGCCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTGGAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAGGGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTGGA ]
[+] EMBL CD139744 [ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGAATTGTCGCCCATCTAGAAGGCCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATAGAGAGAAATTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAA ]
[+] EMBL CD162699 [ TTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTGCCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTGGAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAGGGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTGGATGGATACCTAGACGTGAAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTTACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATGAAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCTTTAAAGTTCCATTCTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTTTCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAAACATCAACGATACTGTCACACCTGTGCTTGGTACAGGATTTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACGACTTCTAAGTCGATATAT AAAA ]
[-] EMBL CD115580 [ AAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTTACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATGAAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCCTTAAAGTTCCATTCTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTTTCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAAACATCAACGATACTGTCACACCTGTGCTAGGTACAGGATTTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATAT AAAAAATAT AAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGG ]
[+] EMBL CD120901 [ TTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATATAAAAAAAATATAAAAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAAGAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGGACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTTTATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGTTTCCAGTTGGTGCAACCGTAATTACCAAGATCGTTGAAGTTACTCCTGANAAATGTCATTGCTTGATAAGCTTGAAAATGTTTGACATATACAATGCT AAAGAATATTANTGTGGGTG ]
[+] EMBL CD159243 [ TTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATAT AAAAAATAT AAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAAGAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGGACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTTTATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGGTTCCAGTTGGTGCAACCGTAATTACCAAGATCGTTGAAGTTACTCCTGAA ]
[+] EMBL CD162237 [ gTGAAGTTACTCCTGAAAAATGTCA TGCTTGATAAGCTTGAAAATGTTTGACGTATACAACGCT ACAGAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTTCAAAGTTGAAGGATTGGATAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA TTCAAATAATATGGACTATGTAGTTTCTCAGACGTA CAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTTGGAAATTGTCTTATCCTCCTGGTTGGTGAACAGT ]
[-] EMBL CD162337 [ TGAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGAAGATGTTTGACATATACAATGCT AAAGAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAGTGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTT AAAG TGAAGGATTGGTTAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA TTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTT GAAATTGTCTTATCCTCCTGGTTGGTGAACAGTA ]
[-] EMBL CD162202 [ GAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGAAAATGTTTGACATATACAATGCT AAATAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTTCAAAGTTGAAGGATTGGATAATTCTGTAATTTTTGGGAAGGCAAGT ATCAATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAATTTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTTGGAAATTGTCTTATCCTCCTGGTTGGTGAACAGTA ]
[+] EMBL CD162247 [ CAATGCTCAACGAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATAGGTGATCATGTTCATTTca ]
[+] EMBL CD197711 [ ataTGG GATCATGTTCATTTCAAAGTTGAAGGATTGGATAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA TTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTTGGAAATTGTCTTATCCTCCTGGTTGGTGAACAGTATAAATACAAGGAAAGAGAATATATCTAGTTCTTTAAAACAGAAACAACAAATATCGTCTGTTGTACTGGCATGTCGGAGTCGTGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGAGTGGGAATGCTTGGGTTGTTGGTCAACGAAATAAAATAACTCTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGC]
consensusID : consensus_9929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[AATGGACTTCACAGAATCCCGAGCTATTATGCTCTTTTCGTACTGCAGATCATGTACATTTCAAAGTTGACGGATACGCTATTTCTGTCACCCTTGGTAAGGCGCGTAAATTATCACATAACGATCCCACTACTCGCCATATCTGGGTGCCCGCTATGGTGCATGCCGCCAACTCAAATAATATCGACTATGCCGTTTCTCAGACATCCTCAGGCATCGTGTGCTTGATAGATCCTGAACATTCACGGCTGGAACTGGGCGGATCCTCCTGGTTGGCGCACACGCTATATACACGGAAAGACATTCTATCTAGTTCTTTAAAACAGATACAACAAATCTCGTCTGTTGTACTGGCCCGCGTTATATCCAGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGGGTGGGAATGCTTGNGTTGTTGGTCAACGAAATAAAATAACTTTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGCAATTGTGTACTTTAACAATTTATGATCC]
[+] EMBL CD162536 [AATGGACTTCACAGAATCCCGAGCTATTATGCTCTTTTCGTACTGCAGATCATGTACATTTCAAAGTTGACGGATACGCTATTTCTGTCACCCTTGGTAAGGCGCGTAAATTATCACATAACGATCCCACTACTCGCCATATCTGGGTGCCCGCTATGGTGCATGCCGCCAACTCAAATAATATCGACTATGCCGTTTCTCAGACATCCTCAGGCATCGTGTGCTTGATAGATCCTGAACATTCACGGCTGGAACTGGGCGGATCCTCCTGGTTGGCGCACACGCTATATACACGGAAAGACATTCTATCTAGTTCTTTAAAACAGATACAACAAATCTCGTCTGTTGTACTGGCCCGCGTTATATCCAGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGGGTGGGAATGCTTGNGTTGTTGGTCAACGAAATAAAATAACTTTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGCAATTGTGTACTTTAACAATTTATGATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9929#0 ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGTATTGTCGTCCATCTAGAAG 60
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 GTCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATA 120
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 GAGAGAAATTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTG 180
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 CCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTG 240
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 GAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAG 300
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 GGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTG 360
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 GATGGATACCTAGACGTGAAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTT 420
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 ACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATG 480
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 AAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCTTTAAAGTTCCATT 540
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 CTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTT 600
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 TCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAA 660
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 ACATCAACGATACTGTCACACCTGTGCTTGGTACAGGATTTCTATCATTTAGTCAATTAT 720
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 CTGATTATGAATCAAATCAACAACTTCTAAGTCGATATATAAAAAATATAAAACCTGGTT 780
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 CTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAA 840
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 CTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATA 900
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 TTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAA 960
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 GAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGG 1020
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 ACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTT 1080
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 TATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGTTTCCAGTTGGTGCAA 1140
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 CCGTAATTACCAAGATCGTTGAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGA 1200
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 AAATGTTTGACATATACAATGCTAAAGAATATTATGTGGGTGGGGCGATACAATCAATAA 1260
consensus_9929#1 ------------------------------------------------------------
consensus_9929#0 ACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTC 1320
consensus_9929#1 ---------------------AATGGACTTCACAGAATCCCGAGCTATTATGCTCTTTTC 39
****** ********* * *** ****** *********
consensus_9929#0 GTATTGGTGATCATGTTCATTTAAAG--TGAAGGATTGGATAATTCTGTAATTTTTGGTA 1378
consensus_9929#1 GTACTGCAGATCATGTACATTTCAAAGTTGACGGATACGCTATTTCTGTCACCCTTGGTA 99
*** ** ******** ***** ** *** **** * ** ****** * ******
consensus_9929#0 AGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGG 1438
consensus_9929#1 AGGCGCGTAAATTATCACATAACGATCCCACTACTCGCCATATCTGGGTGCCCGCTATGG 159
**** ***** ***** * ** ********* * ** ** ******** *******
consensus_9929#0 TGTATGTGGCAAATTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTG 1498
consensus_9929#1 TGCATGCCGCCAACTCAAATAATATCGACTATGCCGTTTCTCAGACATCCTCAGGCATCG 219
** *** ** ** *********** ******* *********** * ********* *
consensus_9929#0 TATGCTTTATTGATCATGAACAATCACGGTTGAAATTGT-CTTATCCTCCTGGTTGGTGA 1557
consensus_9929#1 TGTGCTTGATAGATCCTGAACATTCACGGCTGGAACTGGGCGGATCCTCCTGGTTGGCGC 279
* ***** ** **** ****** ****** ** ** ** * ************** *
consensus_9929#0 ACAGTATAAATACAAGGAAAGAGAATATATCTAGTTCTTTAAAACAGAAACAACAAATAT 1617
consensus_9929#1 ACACGCTATATACACGGAAAGACATTCTATCTAGTTCTTTAAAACAGATACAACAAATCT 339
*** ** ***** ******* * * ********************* ********* *
consensus_9929#0 CGTCTGTTGTACTGGCATGTCGGA-GTCGTGACATAGTTGTTCTTGGTTTACGTGGTCAT 1676
consensus_9929#1 CGTCTGTTGTACTGGCCCGCGTTATATCCAGACATAGTTGTTCTTGGTTTACGTGGTCAT 399
**************** * * ** ******************************
consensus_9929#0 GCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGAGTGGG 1736
consensus_9929#1 GCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGGGTGGG 459
****************************************************** *****
consensus_9929#0 AATGCTTGGGTTGTTGGTCAACGAAATAAAATAACTCTTAGACAATCATTCGAACAAGAA 1796
consensus_9929#1 AATGCTTGNGTTGTTGGTCAACGAAATAAAATAACTTTTAGACAATCATTCGAACAAGAA 519
******** *************************** ***********************
consensus_9929#0 AACAGTTCAACGAAGTTGC---------------------------- 1815
consensus_9929#1 AACAGTTCAACGAAGTTGCAATTGTGTACTTTAACAATTTATGATCC 566
*******************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||