These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1815 fasta sequence [ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGTATTGTCGTCCATCTAGAAGGTCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATAGAGAGAAATTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTGCCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTGGAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAGGGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTGGATGGATACCTAGACGTGAAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTTACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATGAAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCTTTAAAGTTCCATTCTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTTTCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAAACATCAACGATACTGTCACACCTGTGCTTGGTACAGGATTTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATAT--AAAAAATAT--AAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAAGAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGGACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTTTATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGTTTCCAGTTGGTGCAACCGTAATTACCAAGATCGTTGAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGAAAATGTTTGACATATACAATGCT-AAAGAATATTA-TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTT-AAAG-TGAAGGATTGGATAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA-TTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTT-GAAATTGTCTTATCCTCCTGGTTGGTGAACAGTATAAATACAAGGAAAGAGAATATATCTAGTTCTTTAAAACAGAAACAACAAATATCGTCTGTTGTACTGGCATGTCGGAGTCGTGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGAGTGGGAATGCTTGGGTTGTTGGTCAACGAAATAAAATAACTCTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGC] [+] EMBL CD139595 [ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGTATTGTCGTCCATCTAGAAGGTCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATAGAGAGAAATTTAAAGCAGGAAAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTGCCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTGGAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAGGGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTGGA ] [+] EMBL CD139744 [ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGAATTGTCGCCCATCTAGAAGGCCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATAGAGAGAAATTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAA ] [+] EMBL CD162699 [ TTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTGCCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTGGAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAGGGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTGGATGGATACCTAGACGTGAAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTTACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATGAAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCTTTAAAGTTCCATTCTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTTTCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAAACATCAACGATACTGTCACACCTGTGCTTGGTACAGGATTTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACGACTTCTAAGTCGATATAT AAAA ] [-] EMBL CD115580 [ AAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTTACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATGAAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCCTTAAAGTTCCATTCTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTTTCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAAACATCAACGATACTGTCACACCTGTGCTAGGTACAGGATTTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATAT AAAAAATAT AAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGG ] [+] EMBL CD120901 [ TTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATATAAAAAAAATATAAAAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAAGAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGGACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTTTATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGTTTCCAGTTGGTGCAACCGTAATTACCAAGATCGTTGAAGTTACTCCTGANAAATGTCATTGCTTGATAAGCTTGAAAATGTTTGACATATACAATGCT AAAGAATATTANTGTGGGTG ] [+] EMBL CD159243 [ TTCTATCATTTAGTCAATTATCTGATTATGAATCAAATCAACAACTTCTAAGTCGATATAT AAAAAATAT AAAACCTGGTTCTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAACTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATATTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAAGAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGGACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTTTATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGGTTCCAGTTGGTGCAACCGTAATTACCAAGATCGTTGAAGTTACTCCTGAA ] [+] EMBL CD162237 [ gTGAAGTTACTCCTGAAAAATGTCA TGCTTGATAAGCTTGAAAATGTTTGACGTATACAACGCT ACAGAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTTCAAAGTTGAAGGATTGGATAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA TTCAAATAATATGGACTATGTAGTTTCTCAGACGTA CAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTTGGAAATTGTCTTATCCTCCTGGTTGGTGAACAGT ] [-] EMBL CD162337 [ TGAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGAAGATGTTTGACATATACAATGCT AAAGAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAGTGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTT AAAG TGAAGGATTGGTTAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA TTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTT GAAATTGTCTTATCCTCCTGGTTGGTGAACAGTA ] [-] EMBL CD162202 [ GAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGAAAATGTTTGACATATACAATGCT AAATAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATTGGTGATCATGTTCATTTCAAAGTTGAAGGATTGGATAATTCTGTAATTTTTGGGAAGGCAAGT ATCAATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAATTTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTTGGAAATTGTCTTATCCTCCTGGTTGGTGAACAGTA ] [+] EMBL CD162247 [ CAATGCTCAACGAATATTA TGTGGGTGGGGCGATACAATCAATAAACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTCGTATAGGTGATCATGTTCATTTca ] [+] EMBL CD197711 [ ataTGG GATCATGTTCATTTCAAAGTTGAAGGATTGGATAATTCTGTAATTTTTGGTAAGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGGTGTATGTGGCAAA TTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTGTATGCTTTATTGATCATGAACAATCACGGTTGGAAATTGTCTTATCCTCCTGGTTGGTGAACAGTATAAATACAAGGAAAGAGAATATATCTAGTTCTTTAAAACAGAAACAACAAATATCGTCTGTTGTACTGGCATGTCGGAGTCGTGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGAGTGGGAATGCTTGGGTTGTTGGTCAACGAAATAAAATAACTCTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGC] consensusID : consensus_9929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [AATGGACTTCACAGAATCCCGAGCTATTATGCTCTTTTCGTACTGCAGATCATGTACATTTCAAAGTTGACGGATACGCTATTTCTGTCACCCTTGGTAAGGCGCGTAAATTATCACATAACGATCCCACTACTCGCCATATCTGGGTGCCCGCTATGGTGCATGCCGCCAACTCAAATAATATCGACTATGCCGTTTCTCAGACATCCTCAGGCATCGTGTGCTTGATAGATCCTGAACATTCACGGCTGGAACTGGGCGGATCCTCCTGGTTGGCGCACACGCTATATACACGGAAAGACATTCTATCTAGTTCTTTAAAACAGATACAACAAATCTCGTCTGTTGTACTGGCCCGCGTTATATCCAGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGGGTGGGAATGCTTGNGTTGTTGGTCAACGAAATAAAATAACTTTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGCAATTGTGTACTTTAACAATTTATGATCC] [+] EMBL CD162536 [AATGGACTTCACAGAATCCCGAGCTATTATGCTCTTTTCGTACTGCAGATCATGTACATTTCAAAGTTGACGGATACGCTATTTCTGTCACCCTTGGTAAGGCGCGTAAATTATCACATAACGATCCCACTACTCGCCATATCTGGGTGCCCGCTATGGTGCATGCCGCCAACTCAAATAATATCGACTATGCCGTTTCTCAGACATCCTCAGGCATCGTGTGCTTGATAGATCCTGAACATTCACGGCTGGAACTGGGCGGATCCTCCTGGTTGGCGCACACGCTATATACACGGAAAGACATTCTATCTAGTTCTTTAAAACAGATACAACAAATCTCGTCTGTTGTACTGGCCCGCGTTATATCCAGACATAGTTGTTCTTGGTTTACGTGGTCATGCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGGGTGGGAATGCTTGNGTTGTTGGTCAACGAAATAAAATAACTTTTAGACAATCATTCGAACAAGAAAACAGTTCAACGAAGTTGCAATTGTGTACTTTAACAATTTATGATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9929#0 ATAAAGTGTCGGCTACCGTTAAGCGTTATTCAAAAACTGGTATTGTCGTCCATCTAGAAG 60 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 GTCGAATTCATGGACTTATACCTTATCTACACACAACTGATATTAATCTTAAGGATCATA 120 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 GAGAGAAATTTAAAGCAGGAGAGAAAGTTTCTTGTTTAGTTTTACAACTTGACGAATGTG 180 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 CCAATAAATTGATTTTAACCGCAAAACCGGGCTTATTAAATGCTGAACTTCCAATATTTG 240 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 GAAGTCACGAAATGTATTCTGCACTGAAAAATGGCAATAATAATCAACTATTGATTGTAG 300 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 GGTTTATTGTTAAGGTTAGCGAAAAAGGCTTACTCATTTCTGGTTTGGATAATATTCGTG 360 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 GATGGATACCTAGACGTGAAACTGGACTAGCTGATGAAGATATTTTACAGACAAACTTTT 420 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 ACCGTGGACAAGTACTGAAGATGAAATTTAAACGTGAGATTAATATTTCGTCAGAAAATG 480 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 AAGTAGAAAAAGATAGTCGAAATATACGTTCAAAGTATATGCTTTCTTTAAAGTTCCATT 540 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 CTAAGAAAACTAAAAACATGCAGTCGATATTTTTGAACTCTGTGCAAATTGGTCAGCTTT 600 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 TCAGGGCTACTGTAAATCAAGTACAGGACACTGGAATATCGCTTAACCTTTATGACAAAA 660 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 ACATCAACGATACTGTCACACCTGTGCTTGGTACAGGATTTCTATCATTTAGTCAATTAT 720 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 CTGATTATGAATCAAATCAACAACTTCTAAGTCGATATATAAAAAATATAAAACCTGGTT 780 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 CTACACTTGATTGGAATCATTCTGCGCGTAATGTAGTCGTTATTGATAAAGGAAAACAAA 840 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 CTGTCATTTTATCTGCTAGACCAACATTAGTTCAAGCAGCTAGTGATTTGAAAACAAATA 900 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 TTAATATTGATGTTGATATGGTAGATTCAGAAGCATCTGACAAAAGGCCTGGTTTCCTAA 960 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 GAACGTTTGATGAATTACAAGTTGGTAGTCAATGGTTTGCATGGGTTTCACATCACAAGG 1020 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 ACTATGGTGTCTTTGTTCACTTTCCTGCTGGAATTTATGGTTTGGCACCGAAGCATCTTT 1080 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 TATCCGACTTTCGTACTCAATCTAATACAAACTGGACTGAATTGTTTCCAGTTGGTGCAA 1140 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 CCGTAATTACCAAGATCGTTGAAGTTACTCCTGAAAAATGTCATTGCTTGATAAGCTTGA 1200 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 AAATGTTTGACATATACAATGCTAAAGAATATTATGTGGGTGGGGCGATACAATCAATAA 1260 consensus_9929#1 ------------------------------------------------------------ consensus_9929#0 ACTATTATTTAACTGAAAGGGAATGGATTTCACAGAAACACGAACTATTAGGCTCTTTTC 1320 consensus_9929#1 ---------------------AATGGACTTCACAGAATCCCGAGCTATTATGCTCTTTTC 39 ****** ********* * *** ****** ********* consensus_9929#0 GTATTGGTGATCATGTTCATTTAAAG--TGAAGGATTGGATAATTCTGTAATTTTTGGTA 1378 consensus_9929#1 GTACTGCAGATCATGTACATTTCAAAGTTGACGGATACGCTATTTCTGTCACCCTTGGTA 99 *** ** ******** ***** ** *** **** * ** ****** * ****** consensus_9929#0 AGGCAAGTAAACTATCAGAGAAGAATCCCACTAAGCAACAAATATGGGTGCCAGCTATGG 1438 consensus_9929#1 AGGCGCGTAAATTATCACATAACGATCCCACTACTCGCCATATCTGGGTGCCCGCTATGG 159 **** ***** ***** * ** ********* * ** ** ******** ******* consensus_9929#0 TGTATGTGGCAAATTCAAATAATATGGACTATGTAGTTTCTCAGACGTACTCAGGCATTG 1498 consensus_9929#1 TGCATGCCGCCAACTCAAATAATATCGACTATGCCGTTTCTCAGACATCCTCAGGCATCG 219 ** *** ** ** *********** ******* *********** * ********* * consensus_9929#0 TATGCTTTATTGATCATGAACAATCACGGTTGAAATTGT-CTTATCCTCCTGGTTGGTGA 1557 consensus_9929#1 TGTGCTTGATAGATCCTGAACATTCACGGCTGGAACTGGGCGGATCCTCCTGGTTGGCGC 279 * ***** ** **** ****** ****** ** ** ** * ************** * consensus_9929#0 ACAGTATAAATACAAGGAAAGAGAATATATCTAGTTCTTTAAAACAGAAACAACAAATAT 1617 consensus_9929#1 ACACGCTATATACACGGAAAGACATTCTATCTAGTTCTTTAAAACAGATACAACAAATCT 339 *** ** ***** ******* * * ********************* ********* * consensus_9929#0 CGTCTGTTGTACTGGCATGTCGGA-GTCGTGACATAGTTGTTCTTGGTTTACGTGGTCAT 1676 consensus_9929#1 CGTCTGTTGTACTGGCCCGCGTTATATCCAGACATAGTTGTTCTTGGTTTACGTGGTCAT 399 **************** * * ** ****************************** consensus_9929#0 GCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGAGTGGG 1736 consensus_9929#1 GCAGCTGGGCTGTTAAGTGTTGTACCAGCAAGACGTACATTTAATGATGTAGTGGGTGGG 459 ****************************************************** ***** consensus_9929#0 AATGCTTGGGTTGTTGGTCAACGAAATAAAATAACTCTTAGACAATCATTCGAACAAGAA 1796 consensus_9929#1 AATGCTTGNGTTGTTGGTCAACGAAATAAAATAACTTTTAGACAATCATTCGAACAAGAA 519 ******** *************************** *********************** consensus_9929#0 AACAGTTCAACGAAGTTGC---------------------------- 1815 consensus_9929#1 AACAGTTCAACGAAGTTGCAATTGTGTACTTTAACAATTTATGATCC 566 ******************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||