cluster # 9930

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9930 cluster # 9930 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9930#0 length = 904 sequences # 11

consensus_9930#1 length = 532 sequences # 1

consensusID : consensus_9930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 904
fasta sequence

                              [ACAAGGTAGGTTTTCAGAAC-ATTCA-CTTGTCGTTAATAGATATCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC-ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC-ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAG-GCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGTTTGGATCA]

[+] EMBL CD127928             [ACAAGGTAGGTTTTCAGAAC ATTCA CTTGTCGTTAATAGATATCGCTTTCCATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCCATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTG                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD127678             [        GGTTTACAGAACAATTTATCTTGTCATTAATAGATATCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCTTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD196111             [                                            TCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD094418             [                                                                                                ATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD196152             [                                                                                                                                                                                                                                                                                     GCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATC                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD116358             [                                                                                                                                                                                                                                                                                                                                                                                       AACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGT                                                                                                                                                                                                                                                                ]
[-] EMBL CD116338             [                                                                                                                                                                                                                                                                                                                                                                                       AACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTGCATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGT                                                                                                                                                                                                                                                                ]
[-] EMBL CD087969             [                                                                                                                                                                                                                                                                                                                                                                                          ACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGT                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD162327             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTCATTCGCACCCATCCGATAACCTCATCTGCAATTACNTACATCACCGTCCGTAAGAAATATGA TTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGA                                                                               ]
[+] EMBL CD112717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTTAGAGCATTGTAAGCTTCTGTACCGCCCGATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGCGCAAA                                                  ]
[-] EMBL CD132102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAG GCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGTTTGGATCA]




>consensus_9930#0
ACAAGGTAGGTTTTCAGAACATTCACTTGTCGTTAATAGATATCGCTTTCGATATACTTA
ATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAG
TTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTG
GAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATT
TCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAA
GAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCAT
TGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAG
TAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTAC
CTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTG
AATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCCATATCAGCATTCAGGT
CTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAA
ATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGC
TCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTAC
CTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAG
GAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGTTTGG
ATCA

consensusID : consensus_9930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [GAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTACCTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACCATATTCCAGAGATGATAGAGATGTAAGTGG]

[-] EMBL CD189756             [GAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTACCTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACCATATTCCAGAGATGATAGAGATGTAAGTGG]




>consensus_9930#1
GAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCAC
TTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAAT
ATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTG
AGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAA
TGCAGTACCTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCAT
TCGCACCAATCCGATAACCTCATCTGCATTACCTACATCACCGTCCGTAAGAAATATTAT
CACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAG
AACTAACAACATTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAATA
TAGACGACTGGTTTGGATCACCATATTCCAGAGATGATAGAGATGTAAGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9930#0      ACAAGGTAGGTTTTCAGAACATTCACTTGTCGTTAATAGATATCGCTTTCGATATACTTA 60
consensus_9930#1      ------------------------------------------------------------
                                                                                  

consensus_9930#0      ATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAG 120
consensus_9930#1      ------------------------------------------------------------
                                                                                  

consensus_9930#0      TTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTG 180
consensus_9930#1      ----------------------------GAAATATGTCGAGAACCGATCAGGGAATACTG 32
                                                  ********************************

consensus_9930#0      GAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATT 240
consensus_9930#1      GAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATT 92
                      ************************************************************

consensus_9930#0      TCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAA 300
consensus_9930#1      TCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAA 152
                      ************************************************************

consensus_9930#0      GAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCAT 360
consensus_9930#1      GAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCAT 212
                      ************************************************************

consensus_9930#0      TGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAG 420
consensus_9930#1      TGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAG 272
                      ************************************ ***********************

consensus_9930#0      TAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTAC 480
consensus_9930#1      TAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTAC 332
                      ************************************************************

consensus_9930#0      CTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTG 540
consensus_9930#1      CTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAA 392
                      ************************* **    **  *     * * * *  *** *    

consensus_9930#0      AATGTAGAGCTGCCTTTAGAGCATTGTAAGCTT-CTGTACCGCCCATATCAGCATTCAGG 599
consensus_9930#1      AACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGC 452
                      **     *      *     *  **   * **  *   *      *******     ** 

consensus_9930#0      T---CTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCT 656
consensus_9930#1      TGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACC---ATATTCC 509
                      *   *  *     ******* ***    *  ****    *  * **   *   *  *** 

consensus_9930#0      GGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGT 716
consensus_9930#1      AGAGATGA--TAGAGATGTAAGTGG----------------------------------- 532
                       ** ** *   **  *  * * *                                     

consensus_9930#0      AAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATA 776
consensus_9930#1      ------------------------------------------------------------
                                                                                  

consensus_9930#0      CTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACA 836
consensus_9930#1      ------------------------------------------------------------
                                                                                  

consensus_9930#0      TTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGT 896
consensus_9930#1      ------------------------------------------------------------
                                                                                  

consensus_9930#0      TTGGATCA 904
consensus_9930#1      --------