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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 904 fasta sequence
[ACAAGGTAGGTTTTCAGAAC-ATTCA-CTTGTCGTTAATAGATATCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC-ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC-ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAG-GCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGTTTGGATCA]
[+] EMBL CD127928 [ACAAGGTAGGTTTTCAGAAC ATTCA CTTGTCGTTAATAGATATCGCTTTCCATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCCATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTG ]
[+] EMBL CD127678 [ GGTTTACAGAACAATTTATCTTGTCATTAATAGATATCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCTTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTC ]
[-] EMBL CD196111 [ TCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGC ]
[+] EMBL CD094418 [ ATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCA ]
[+] EMBL CD196152 [ GCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATC ]
[-] EMBL CD116358 [ AACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGT ]
[-] EMBL CD116338 [ AACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTGCATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGT ]
[-] EMBL CD087969 [ ACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGT ]
[-] EMBL CD162327 [ ATTCATTCGCACCCATCCGATAACCTCATCTGCAATTACNTACATCACCGTCCGTAAGAAATATGA TTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGA ]
[+] EMBL CD112717 [ CTTTAGAGCATTGTAAGCTTCTGTACCGCCCGATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGCGCAAA ]
[-] EMBL CD132102 [ ATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAG GCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGTTTGGATCA]
consensusID : consensus_9930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[GAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTACCTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACCATATTCCAGAGATGATAGAGATGTAAGTGG]
[-] EMBL CD189756 [GAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTACCTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACCATATTCCAGAGATGATAGAGATGTAAGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9930#0 ACAAGGTAGGTTTTCAGAACATTCACTTGTCGTTAATAGATATCGCTTTCGATATACTTA 60
consensus_9930#1 ------------------------------------------------------------
consensus_9930#0 ATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAG 120
consensus_9930#1 ------------------------------------------------------------
consensus_9930#0 TTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTG 180
consensus_9930#1 ----------------------------GAAATATGTCGAGAACCGATCAGGGAATACTG 32
********************************
consensus_9930#0 GAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATT 240
consensus_9930#1 GAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATT 92
************************************************************
consensus_9930#0 TCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAA 300
consensus_9930#1 TCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAA 152
************************************************************
consensus_9930#0 GAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCAT 360
consensus_9930#1 GAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCAT 212
************************************************************
consensus_9930#0 TGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAG 420
consensus_9930#1 TGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAG 272
************************************ ***********************
consensus_9930#0 TAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTAC 480
consensus_9930#1 TAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTAC 332
************************************************************
consensus_9930#0 CTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTG 540
consensus_9930#1 CTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAA 392
************************* ** ** * * * * * *** *
consensus_9930#0 AATGTAGAGCTGCCTTTAGAGCATTGTAAGCTT-CTGTACCGCCCATATCAGCATTCAGG 599
consensus_9930#1 AACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGC 452
** * * * ** * ** * * ******* **
consensus_9930#0 T---CTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCT 656
consensus_9930#1 TGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACC---ATATTCC 509
* * * ******* *** * **** * * ** * * ***
consensus_9930#0 GGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGT 716
consensus_9930#1 AGAGATGA--TAGAGATGTAAGTGG----------------------------------- 532
** ** * ** * * * *
consensus_9930#0 AAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATA 776
consensus_9930#1 ------------------------------------------------------------
consensus_9930#0 CTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACA 836
consensus_9930#1 ------------------------------------------------------------
consensus_9930#0 TTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGT 896
consensus_9930#1 ------------------------------------------------------------
consensus_9930#0 TTGGATCA 904
consensus_9930#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||