These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1157 fasta sequence [CAATACGTGATGAGAACCGGTAAGATTATTTTCCAA-AACAAACTTTGAATATACAATGAACAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCATCTCATATAACGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATAGGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATAAATAAGGGAACTGGGGAAATGAAAAGAACATAAATACATATAGAGTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTC-AAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGACTAATGTATTAGGTTCATTTACAAAATTGTTGTCAACCCCAACTGTTTTTGAATTCTCCCAGGCAAGGTTTCGATGGCATAAGGCACGAAATTGACAAAACTTTTCAGAAATCAGTAGTCTCGCTTTGCCAGAAGCAGTTCGTAAAAGACCAGAAACTTCATCATTCAAATCAACTTCATTATTAAGATCAGTTTCAATTTCACAAACTTTATTCAATAATTCTTTCTCTGTTTGATCTACTTGTTGAAGATAAAAATTTCCATCCACTTTAATTTCTGATTCATTTGACA] [+] EMBL CD159724 [CAATACGTGATGAGAACCGGTAAGATTATTTTCCAA AACAAACTTTGAATATACAATGAACAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCATCTCATATAACGAATATATGACAGGATCGGCAAAGAGATATGAAGCTACTTATAGAATATAGGTGAGTAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATCAATAAGGGAACTCGGGAAATGAAAAGAACATAAATACATATAGAGTATATATATCAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTC AAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAAC ] [+] EMBL CD159735 [ AATAAGTGATGAAAACTGGTAAGATTATTTTCCAAGAACAAACTTTGAATATACAATGAACAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCATCTCATATAACGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATAGGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATAAATAAGGGAACTGGGGGAATGAAAAGAACATAAATACATATAGAGTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTC AAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAATTTTATTTTGATTGTGGACTTA ] [-] EMBL CD147650 [ CGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATAGGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATAAATAAGGGAACTGGGGAAATGAAAAGAACATAAATACATATAGAGTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTCAAAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAAT ] [-] EMBL CD159749 [ TAATACTTTACACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAATTTTATTTTTATTGTGGCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTCTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ] [-] EMBL CD159740 [ GAAATTCATAACTTTTATCGCAGTAAAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTACCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ] [-] EMBL CD159784 [ AATTCATAACTTTTATCGCAGTAAAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTCTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ] [-] EMBL CD159766 [ TCATAACTTTTATTGCAGTAAAATAATTTCAATTGTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCGTGTAAAAATTCTATACCAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTAAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAGCCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ] [-] EMBL CD159738 [ AGTACAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATGTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTCTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTACCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ] [-] EMBL CD159746 [ AATAACTTCAATTTTATTTTTATTGTGGCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ] [-] EMBL CD159783 [ AACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAGATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ] [+] EMBL CD154155 [ GTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGACTAATGTATTAGGTTCATTTACAAAATTGTTGTCAACCCCAACTGTTTTTGAATTCTCCCAGGCAAGGTTTCGATGGCATAAGGCACGAAATTGACAAAACTTTTCAGAAATCAGTAGTCTCGCTTTGCCAGAAGCAGTTCGTAAAAGACCAGAAACTTCATCATTCAAATCAACTTCATTATTAAGATCAGTTTCAATTTCACAAACTTTATTCAATAATTCTTTCTCTGTTTGATCTACTTGTTGAAGATAAAAATTTCCATCCACTTTAATTTCTGATTCATTTGACA] consensusID : consensus_9932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [AGCTGGGTTTATACCGTCGTGAGACAGGTTAGTATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAAATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGA] [+] EMBL CD062085 [AGCTGGGTTTATACCGTCGTGAGACAGGTTAGTATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAAATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9932#0 CAATACGTGATGAGAACCGGTAAGATTATTTTCCAAAACAAACTTTGAATATACAATGAA 60 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 CAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCAT 120 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 CTCATATAACGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATA 180 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 GGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGAT 240 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 ATCTTTAACATGGATAAATAAGGGAACTGGGGAAATGAAAAGAACATAAATACATATAGA 300 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 GTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTCAAAAAAAGAAAAC 360 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 TTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAA 420 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 TTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAA-ATATTGA 479 consensus_9932#1 --------------------------------------AGCTGGGTTTATACCGTCGTGA 22 ** * ***** * * *** consensus_9932#0 AATGA---AAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGA 536 consensus_9932#1 GACAGGTTAGTATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGA 82 * * ************************************************* consensus_9932#0 TATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTT 596 consensus_9932#1 TATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTT 142 ************************************************************ consensus_9932#0 TAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATA 656 consensus_9932#1 TAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAAATA 202 ******************************************************** *** consensus_9932#0 AAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTA 716 consensus_9932#1 AAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTA 262 ************************************************************ consensus_9932#0 CTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTA 776 consensus_9932#1 CTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTA 322 ************************************************************ consensus_9932#0 AAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCC 836 consensus_9932#1 AAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCC 382 ************************************************************ consensus_9932#0 AGAAACCATCCAAATCACTAACTAAAGTGACTAATGTATTAGGTTCATTTACAAAATTGT 896 consensus_9932#1 AGAAACCATCCAAATCACTAACTAAAGTGA------------------------------ 412 ****************************** consensus_9932#0 TGTCAACCCCAACTGTTTTTGAATTCTCCCAGGCAAGGTTTCGATGGCATAAGGCACGAA 956 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 ATTGACAAAACTTTTCAGAAATCAGTAGTCTCGCTTTGCCAGAAGCAGTTCGTAAAAGAC 1016 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 CAGAAACTTCATCATTCAAATCAACTTCATTATTAAGATCAGTTTCAATTTCACAAACTT 1076 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 TATTCAATAATTCTTTCTCTGTTTGATCTACTTGTTGAAGATAAAAATTTCCATCCACTT 1136 consensus_9932#1 ------------------------------------------------------------ consensus_9932#0 TAATTTCTGATTCATTTGACA 1157 consensus_9932#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||