cluster # 9934

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Schistosoma mansoni
cluster # 9934 cluster # 9934 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9934#0 length = 1021 sequences # 11

consensus_9934#1 length = 330 sequences # 1

consensusID : consensus_9934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1021
fasta sequence

                              [CTATGGACAGTTACTCATTTGTCCGACCTGGAAAGTTAAAATTAAAAGGTGAGAAGAAAAAAAAGCACCACAAAAGACGTCAAGAATCAAAACCAAAGGTTGAGAAA-ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGCGCTTGTCATTCTGGCAATCTGTATGAATGTGTACTAGATCGACGTGAAAAAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTTTTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTTCTTTGTTAATAAATTTGTCA]

[+] EMBL CD078748             [CTATGGACAGTTACTCATTTGTCCGACCTGGAAAGTTAAAATTAAAAGGTGAGAAGAAAAAAAAGCACCACAAAAGACGTCAAGAATCAAAACCAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCANACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD079453             [                                                                                  AGAATCAAAACC AAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGGTGCATTTAAATCTGGGTATGGTAGATATCTTGGGGTTTGCACCAAATCCGACGCTATTTTGAGAGCCACAGCATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD153520             [                                                                                             CAAAGGTTGAGAAATACAGAGCTTATTTTGTAAGTGGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAGTAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACGCGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAAGCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD153529             [                                                                                             CAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGAT CCATTACGGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD153548             [                                                                                             CAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD153564             [                                                                                             CAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD079104             [                                                                                                                                                                                                                            CGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCATAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTA                                                                                                                                                                                                                                                                          ]
[-] EMBL CD132293             [                                                                                                                                                                                                                                                                                                                                                                                                                                         TAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAA                                                                                                                                                                                                                                                               ]
[-] EMBL CD073558             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAG TTTTGAACAATTCGAACCAA TTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGGTAAAACCAATGAAATGGTTATCTTTCGTTTTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGCGCTTGTCATTCTGGCAATCTGTATGAATGTTTACTAGATCGACGTGAAAAAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTTTTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTTCTTTGTTAATAAATTTGTCA]
[-] EMBL CD073724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATCAAATGGTTATCTTTCGTTTTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAACAAAGAAGATTTCAGTGATGTAAAACGCGCTCGTCATTCTGGCAATGTGTATGAATGTGTATTAGATCGCCGTGAAAAAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGCAACATGGATTATTTGTTCCCTGAAGTGTTGTCGAAATCGTCCAGACAGTTTTTTTGACTACCGGAAGATAATTTATTGTAATGTTTCCTTTCTTTATTAATAAATTTGTC ]
[+] EMBL AA791373             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTGGCAATCTGTATGAATGTCTACTAGATCGACGTGAAAAAATGAAATCAGATCGATACTGT  ATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTTCTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTc                    ]




>consensus_9934#0
CTATGGACAGTTACTCATTTGTCCGACCTGGAAAGTTAAAATTAAAAGGTGAGAAGAAAA
AAAAGCACCACAAAAGACGTCAAGAATCAAAACCAAAGGTTGAGAAAACAGAACGTATTT
TGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATT
CAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAG
CAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAG
CTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCC
CAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTT
ATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATG
CTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAG
GAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTC
AACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATC
CTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATG
TACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAAAGAAGATTTCAGTG
ATGTAAAACGCGCTTGTCATTCTGGCAATCTGTATGAATGTGTACTAGATCGACGTGAAA
AAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGT
CTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTT
TTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTTCTTTGTTAATAAATTTGTC
A

consensusID : consensus_9934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [AAGGGTTAAAAAAAGGTGAAGTTAATTATGGACGTAAATTTCAAAGTTGGCAAGATCAAAAGGTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGGGGTTGTCATTTTGGCAATTTGTATGAAAGTTTAGTAGATCGACGTGAAAAAATGAAATCAGATCGAAACTGGAAAAAGGGAAAATTCATCGGGGAAATTTTTTTATTGTCTTTTTACGAAACATGGATTATTTGTTCCCTGAAGGGTTGTTGAAATTGTCGAGACAGTTTTTTTGACTACCGGAAGAAAATTTATTTTAAAGGTTCCCTTTTTTGGTAAAAAATTTGTC]

[-] EMBL CD073208             [AAGGGTTAAAAAAAGGTGAAGTTAATTATGGACGTAAATTTCAAAGTTGGCAAGATCAAAAGGTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGGGGTTGTCATTTTGGCAATTTGTATGAAAGTTTAGTAGATCGACGTGAAAAAATGAAATCAGATCGAAACTGGAAAAAGGGAAAATTCATCGGGGAAATTTTTTTATTGTCTTTTTACGAAACATGGATTATTTGTTCCCTGAAGGGTTGTTGAAATTGTCGAGACAGTTTTTTTGACTACCGGAAGAAAATTTATTTTAAAGGTTCCCTTTTTTGGTAAAAAATTTGTC]




>consensus_9934#1
AAGGGTTAAAAAAAGGTGAAGTTAATTATGGACGTAAATTTCAAAGTTGGCAAGATCAAA
AGGTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGGGGTTGTCATTTTGGCAATT
TGTATGAAAGTTTAGTAGATCGACGTGAAAAAATGAAATCAGATCGAAACTGGAAAAAGG
GAAAATTCATCGGGGAAATTTTTTTATTGTCTTTTTACGAAACATGGATTATTTGTTCCC
TGAAGGGTTGTTGAAATTGTCGAGACAGTTTTTTTGACTACCGGAAGAAAATTTATTTTA
AAGGTTCCCTTTTTTGGTAAAAAATTTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9934#0      CTATGGACAGTTACTCATTTGTCCGACCTGGAAAGTTAAAATTAAAAGGTGAGAAGAAAA 60
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      AAAAGCACCACAAAAGACGTCAAGAATCAAAACCAAAGGTTGAGAAAACAGAACGTATTT 120
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      TGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATT 180
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      CAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAG 240
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      CAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAG 300
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      CTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCC 360
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      CAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTT 420
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      ATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATG 480
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      CTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAG 540
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      GAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTC 600
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      AACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATC 660
consensus_9934#1      ------------------------------------------------------------
                                                                                  

consensus_9934#0      CTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATG 720
consensus_9934#1      ------------------------------AAGGGTTAAAAAAAGGTGAAGTTAATTATG 30
                                                    **** ********** **************

consensus_9934#0      TACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAAAGAAGATTTCAGTG 780
consensus_9934#1      GACGTAAATTTCAAAGTTGGCAAGATCAAAAGGTACGTTTAAGCAAAGAAGATTTCAGTG 90
                       ******************************* ***************************

consensus_9934#0      ATGTAAAACGCGCTTGTCATTCTGGCAATCTGTATGAATGTGTACTAGATCGACGTGAAA 840
consensus_9934#1      ATGTAAAACGGGGTTGTCATTTTGGCAATTTGTATGAAAGTTTAGTAGATCGACGTGAAA 150
                      ********** * ******** ******* ******** ** ** ***************

consensus_9934#0      AAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGT 900
consensus_9934#1      AAATGAAATCAGATCGAAACTGGAAAAAGGGAAAATTCATCGGGGAAATTTTTTTATTGT 210
                      ***************** **** *** ** ** ********* * ** ********* **

consensus_9934#0      CTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTT 960
consensus_9934#1      CTTTTTACGAAACATGGATTATTTGTTCCCTGAAGGGTTGTTGAAATTGTCGAGACAGTT 270
                      **************** *********** ****** ***** ***** ************

consensus_9934#0      TTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTTCTTTGTTAATAAATTTGTC 1020
consensus_9934#1      TTTTTGACTACCGGAAGAAAATTTATTTTAAAGGTTCCCTTTTTTGGTAAAAAATTTGTC 330
                      ** *************** ************ * **** ** **** *** *********

consensus_9934#0      A 1021
consensus_9934#1      -