These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1231 fasta sequence [ACTGTGGAGTGTTGAAGCTAAAAATCTTTCTTATCTTTCAAAGTATTCATTTGAAAACGTTTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTTAGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG-ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTATATGGCGTGTGTAGAAAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTGTTTCCCAGAATATTTGTTTGCAATTTGATTCATTTACTTGCTTCCCGTTTTCAATACTTATGTAATATAAAGTGTTTTGGGTTTCACTTTTCTTCT] [+] EMBL CD147834 [ACTGTGGAGTGTTGAAGCTAAAAATCTTTCTTATCTTTCAAAGTATTCATTTGAAAACGTTTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTTAGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATG ] [+] EMBL CD117146 [ TTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTTAGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTGGGAATATCTACAATGAGTATTTCANAAAAGTTGTCATTAATTGTTGTTGGATCA ] [+] EMBL CD159494 [ CTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAACAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAGTATCTACAATGAG ] [+] EMBL CD159474 [ CTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTAT ] [+] EMBL CD117519 [ AATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGG ] [+] EMBL CD117639 [ AATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGA ] [+] EMBL CD113044 [ ATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTATTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGTTCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAAC ] [+] EMBL CD082966 [ ATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTNTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGT ] [-] EMBL CD076549 [ TGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTATATGGCGTGTGTAGAAAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTGTTTCCCAGAATATTTGTTTGCAATTTGATTCATTTACTTGCTTCCCGTTTTCAATACTTATGTAATATAAAGTGTT ] [-] EMBL CD111033 [ TTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTCGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGAT ] [+] EMBL AW061408 [ TTATGAAGGAAATCAAAATGTACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTATATGGCGTGTGTAG AAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTG TTCCAAGAATATTTGTTTGCAA TTGATTCATTTACTTGC TCCCGTTTACAATACTTATGTAATATAAAGTGTTTTGGGTTTCACTTTTCTTCT] consensusID : consensus_9936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [CAGCCAGAATTCGTCACGAGGTTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATG] [+] EMBL CD077713 [CAGCCAGAATTCGTCACGAGGTTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9936#0 ACTGTGGAGTGTTGAAGCTAAAAATCTTTCTTATCTTTCAAAGTATTCATTTGAAAACGT 60 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 TTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTT 120 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 AGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAA 180 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 ATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAA 240 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 CCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCT 300 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 AGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTT 360 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 GGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGA 420 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 ACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGA 480 consensus_9936#1 ----------------------------------------------------------CA 2 * consensus_9936#0 ATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAA 540 consensus_9936#1 GCCAGAATTCGTCACGAG-GTTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAA 61 * *** ** * **************************************** consensus_9936#0 AAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAG 600 consensus_9936#1 AAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAG 121 ************************************************************ consensus_9936#0 TATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTT 660 consensus_9936#1 TATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTT 181 ************************************************************ consensus_9936#0 TCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAAC 720 consensus_9936#1 TCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAAC 241 ************************************************************ consensus_9936#0 CCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCA 780 consensus_9936#1 CCCAGAAGTGATCGATTTTTCACCTAATGATG---------------------------- 273 ******************************** consensus_9936#0 TTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATGACCTCCCAACTCTTAA 840 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 ATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAG 900 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 TCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATT 960 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 AGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGG 1020 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 ATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTAT 1080 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 ATGGCGTGTGTAGAAAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTGTTTCC 1140 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 CAGAATATTTGTTTGCAATTTGATTCATTTACTTGCTTCCCGTTTTCAATACTTATGTAA 1200 consensus_9936#1 ------------------------------------------------------------ consensus_9936#0 TATAAAGTGTTTTGGGTTTCACTTTTCTTCT 1231 consensus_9936#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||