cluster # 9937

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Schistosoma mansoni
cluster # 9937 cluster # 9937 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9937#0 length = 1148 sequences # 11

consensus_9937#1 length = 391 sequences # 1

consensusID : consensus_9937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1148
fasta sequence

                              [NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAAAATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACA-AGAGGTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAAGAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA]

[+] EMBL CD127267             [NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTAGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGCTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD127068             [        ATAGGTAGGTCAAGATGATTTCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTATGGCATCTGGCAGCAGAGACCGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD071569             [                                                                                            TTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGACGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCANATGGATATAGACATGCTTGGGTTTCGAGATGCNGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AI110922             [                                                                                                                                                                                                               ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAAAAACCGTTATATTCTGTTACGTGATACNCGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTANAAAGTGATTCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI110904             [                                                                                                                                                                                                               ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCANCAAAAACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AI111050             [                                                                                                                                                                                                               ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAAAAACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTANCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD183896             [                                                                                                                                                                                                                                                                                                                                             GACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGCTAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGGTCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAAAATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACA AGAGGTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACG                                                                                                                                                                                                                                                          ]
[+] EMBL CD166292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD198982             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAGAG GGTATGTGGGTTAAAATGGTCTNCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAAGAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA]
[-] EMBL CD199046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGTGGCACTGCCTTAGCCTACGAAGAGCATGTGGCTGCTGTCAAAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA]
[+] EMBL CD124123             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATGGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGG                    ]




>consensus_9937#0
NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAA
AATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAG
GTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCC
AAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTG
ACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCG
TGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACA
CGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCT
AATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAAT
TCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCT
TCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCA
GCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCT
GCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAA
AATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACAAGAG
GTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAAT
CGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAA
GAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCA
AGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCT
TTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAAT
GAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGT
CTAACGCA

consensusID : consensus_9937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG]

[-] EMBL CD127526             [TCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG]




>consensus_9937#1
TCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGT
GTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAG
AAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAA
CTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAA
ACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCA
GCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGAC
CCGCTGGTCACCTACTATTTGCACATNCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9937#0      NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAA 60
consensus_9937#1      ----------------------------TCTACCTTAATCTTGTCGATTGGTCTTCTCAA 32
                                                  * * ****************************

consensus_9937#0      AATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAG 120
consensus_9937#1      AATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAG 92
                      ************************************************************

consensus_9937#0      GTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCC 180
consensus_9937#1      GTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCC 152
                      ************************************************************

consensus_9937#0      AAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTG 240
consensus_9937#1      AAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTG 212
                      ************************************************************

consensus_9937#0      ACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCG 300
consensus_9937#1      ACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCG 272
                      ************************************************************

consensus_9937#0      TGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACA 360
consensus_9937#1      TGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACA 332
                      ************************************************************

consensus_9937#0      CGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCT 420
consensus_9937#1      CGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG- 391
                      ************************************** ****   *  ** ** * *  

consensus_9937#0      AATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAAT 480
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      TCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCT 540
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      TCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCA 600
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      GCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCT 660
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      GCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAA 720
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      AATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACAAGAG 780
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      GTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAAT 840
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      CGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAA 900
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      GAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCA 960
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      AGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCT 1020
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      TTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAAT 1080
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      GAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGT 1140
consensus_9937#1      ------------------------------------------------------------
                                                                                  

consensus_9937#0      CTAACGCA 1148
consensus_9937#1      --------