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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1148 fasta sequence
[NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAAAATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACA-AGAGGTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAAGAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA]
[+] EMBL CD127267 [NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTAGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGCTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGA ]
[-] EMBL CD127068 [ ATAGGTAGGTCAAGATGATTTCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTATGGCATCTGGCAGCAGAGACCGTTAT ]
[+] EMBL CD071569 [ TTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGACGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCANATGGATATAGACATGCTTGGGTTTCGAGATGCNGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAt ]
[+] EMBL AI110922 [ ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAAAAACCGTTATATTCTGTTACGTGATACNCGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTANAAAGTGATTCAAA ]
[+] EMBL AI110904 [ ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCANCAAAAACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCa ]
[+] EMBL AI111050 [ ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAAAAACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTANCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGC ]
[-] EMBL CD183896 [ GACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGCTAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGGTCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAAAATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACA AGAGGTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACG ]
[+] EMBL CD166292 [ TGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGAC ]
[-] EMBL CD198982 [ ACAGAG GGTATGTGGGTTAAAATGGTCTNCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAAGAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA]
[-] EMBL CD199046 [ GGTGGCACTGCCTTAGCCTACGAAGAGCATGTGGCTGCTGTCAAAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA]
[+] EMBL CD124123 [ GTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATGGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGG ]
consensusID : consensus_9937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[TCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG]
[-] EMBL CD127526 [TCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9937#0 NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAA 60
consensus_9937#1 ----------------------------TCTACCTTAATCTTGTCGATTGGTCTTCTCAA 32
* * ****************************
consensus_9937#0 AATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAG 120
consensus_9937#1 AATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAG 92
************************************************************
consensus_9937#0 GTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCC 180
consensus_9937#1 GTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCC 152
************************************************************
consensus_9937#0 AAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTG 240
consensus_9937#1 AAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTG 212
************************************************************
consensus_9937#0 ACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCG 300
consensus_9937#1 ACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCG 272
************************************************************
consensus_9937#0 TGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACA 360
consensus_9937#1 TGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACA 332
************************************************************
consensus_9937#0 CGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCT 420
consensus_9937#1 CGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG- 391
************************************** **** * ** ** * *
consensus_9937#0 AATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAAT 480
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 TCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCT 540
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 TCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCA 600
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 GCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCT 660
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 GCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAA 720
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 AATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACAAGAG 780
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 GTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAAT 840
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 CGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAA 900
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 GAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCA 960
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 AGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCT 1020
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 TTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAAT 1080
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 GAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGT 1140
consensus_9937#1 ------------------------------------------------------------
consensus_9937#0 CTAACGCA 1148
consensus_9937#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||