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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1056 fasta sequence
[TGCTTCTGCCCTAGCTGTCCTTCTGCTCGAATCAATGTTGGCCGCACATATGTAAACCTGGGAATGCCAGATAAAGCACAAGAAGCGTATTACGGAGCACTGGAATATTTCCCTAAACCAAAGAAAGGTCAAACTTATTATGCTCGTGTTTCTCCCAAAGATCTAATGGTCTTCATCAATCTTGCCAATTTATACATCAATAAATCACCCCCAAGGCTTGAGGATGCTGCTGTTCTTCTTCGCCGAGCTATTTCACTGAGATCTGATTTTGTGGACGCATACCAAAACTATGGTAGTGTACTTATCAAGTTAGGAAGGTATAAAGAAGCTGAGGAAGCGTATAGAAATGCTTTATCGTACCAACCGAAAAGCCCAGACTTAAATTACAACTTGGGAGTTGTTCTCTTAGAGTCTCATAAGAAATCCGAGGGTTTGTCTTATTTAAACACTGCCTTAACTTACAATCCACAACATGAGCCTTCCCTGTTTGCTGTTGCATCAACTCTTGGTGAATCAGCTAATCCTGATGACCAGCTAAGAAGCGATAAACATCTATGAACATCTTCTCAAACAAAATTTCGAACCGATCAAAGTACATTTCGCCTTGGGTATGTTACAAACCGATAAAAAGAATTATTATCAAAGCATCTAAACATTATCAAAATGTTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAGTTCATCCTTCACATATAAAGTCTATTTACTTCTCGGAGATTAGAGTTACTTGAAGGCGACCTAAACCTGCAAGCATTTTTTGAAGAACGCTTGATTGGGACAAAGAACTTCGGGAAAAAAAACCTTGGTTGCTTTGCAATTAAATAACTAAACAATGGATTCCCTTTAAGGGTTTTGGGGGGAGCGCACCAATTTTCCCATAAATATTTTGGCCCCGGGCCCTTGTTTTTGGGAAAACCTTTCCGTAAAGTGGTCCTTCCCCTTGAAATTCTTTTA]
[+] EMBL CD187308 [TGCTTCTGCCCTAGCTGTCCTTCTGCTCGAATCAATGTTGGCCGCACATATGTAAACCTGGGAATGCCAGATAAAGCACAAGAAGCGTATTACGGAGCACTGGAATATTTCCCTAAACCAAAGAAAGGTCAAACTTATTATGCTCGTGTTTCTCCCAAAGATCTAATGGTCTTCATCAATCTTGCCAATTTATACATCAATAAATCACCCCCAAGGCTTGAGGATGCTGCTGTTCTTCTTCGCCGAGCTATTTCACTGAGATCTGATTTTGTGGACGCATACCAAAACTATGGTAGTG ]
[+] EMBL AI976763 [ GCCAGATAAAGCAGAAGAAGCGTATTACGGAGCACTGGAATATTTCCCTAAACCAAAGAAAGGTCAAACTTATTATGCTCGTGTTTCTCCCAAAGATCTAATGGTCTTCATCAATCTTGCCAATTTATACATCAATAAATCACCCCCAAGGCTTGAGGATGCTGCTGTTCTTCTTCGCCGAGCTATTTCACTGAGATCTGATTTTGTGGACGCATACCAAAACTATGGTAGTGTACTTATCAAGTTAGGAAGGTATAAAGAAGCTGAGGAAGCGTATAGAAATGCTTTATCGTACCAACCGAAAAGCCCAGACTTAAATTACAACTTGGGAGTTGTTGTGGGAGAGTCTCATAAGAAATCCGAGGGTTTGTCTTATTTAAACACTGCCTTAACTTACAATCCACAACATGAGCCTTCCCTGTTTGCTGTTGCATCAACTCTTGGTGAATCAGCTAATCCTGATGACCAGCTAA AAGCGATAAACATCTATGAACATCT ]
[+] EMBL CD078674 [ AATAAATCACCCCCAAGGCTTGAGGATGCTGCTGTTCTTCTTCGCCGAGCTATTTCACTGAGATCTGATTTTGTGGACGCATACCAAAACTATGGTAGTGTACTTATCAAGTTAGGAAGGTATAAAGAAGCTGAGGAAGCGTATAGAAATGCTTTATCGTACCAACCGAAAAGCCCAGACTTAAATTACAACTTGGGAGTTGTTCTCTTAGAGTCTCATAAGAAATCCGAGGGTTTGTCTTATTTAAACACTGCCTTAACTTACAATCCACAACATGAGCCTTCCCTGTTTGCTGTTGCATCAACTCTTGGTGAATCAGCTAATCCTGATGACCAGCTAAG AGCGATAAACATCTATGAACATCTTCTCAAACAAAATTTCGAACCGATCAAAGTACATTTCGCCTTGGGTATGTTACAAACCGATAAAAAGAATTA TATCAAAGCATCTAAACATTATCAAAATGTTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAGTTCATCCTTCACATATAAAG ]
[+] EMBL CD079498 [ CGCATACCAAAACTATGGTAGTGTACTTATCAAGTTAGGAAGGTATAAAGAAGCTGAGGAAGCGTATAGAAATGCCTTATCGTACCAACCGAAAAGCCCAGACTTAAATTACAACTTGGGAGTTGTTCTCTTAGAGTCTCATAAGAAATCCGAGGGTTTGTCTTATTTAAACACTGCCTTAACTTACAATCCACAACATGAGCCTTCCCTGTTTGCTGTTGCATCAACTCTTGGAGAAACANCTAATCCTGACGACCA TTAAGAAGCAATTTTNNNNTATGAACATCTTCTCAAACAAAATTTCGAACCGATCAAATCACATTCCTGGTTGTGTTTTNCNCCACCCGTTNAAAAGGATTATTTTCAAGCCATCTAAACATTATCAAAATGGTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAGGGAATCTCGCACTTCATCTCATC AAGNTCATCC TCACATATAAAGTCTATTTACTTCTCGGAGATTAGAGTTACTTGAAGGCGACCTAAACCTGCAAGCATTTTTTGAAGAACGCTTGATTGGGACAAAGAACTTCGGGAAAAAAAACCTTGGTTGCTTTGCAATTAAATAACTAAACAATGGATTCCCTTTAAGGGTTTTGGGGGGAGCGCACCAATTTTCCCATAAATATTTTGGCCCCGGGCCCTTGTTTTTGGGAAAACCTTTCCGTAAAGTGGTCCTTCCCCTTGAAATTCTTTTA]
[+] EMBL CD130681 [ CATACCAAAACTATGGTAGTGTACTTATCAAGTTAGGAAGGTATAAAGAAGCTGAGGAAGCGTATAGAAATGCTTTATCGTACCAACCGAAAAGCCCAGACTTAAATTACAACTTGGGAGTTGTTCTCTTAGAGTCTCATAAGAAATCCGAGGGTTTGTCTTATTTGAACACTGCCTTAACTTACAATCCACAACATGAGCCTTCCCTGTTTGCTGTTGCATCAACTCTTGGTGAATCAGCTAATCCTGATGACCAGCTAAG AGCGATAAACATCTATGAACATCTTCTCAAACAAAATTTCGAACCGATCAAAGTACATTTCGCCTTGGGTATGTTACAAACCGATAAAAAGAATTATTATCAAAGCA ]
consensusID : consensus_9943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 568 fasta sequence
[TCTCAAACAAAATTTCGAACCGATCAAAGTACATTTCGCCTTGGGTATGTTACAAACCGATAAAAAGAATTATATCAAAGCATCTAAACATTATCAAAATGTTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAGTTCATCCTTCACATATAAAGTCTTATTTACTTCTCGGAGATATAGAGTTAACTGAAAAGGCGAACATAAAACTAGCAAAGCAATATTTTGAAGAAGCGCTGAAATTGGACCCAAAGAACATTCAGGCAAAACATAACCTTTGTGTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGGAATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAACATCTAGAAATTATACGTGGACGTCTGCATTCTCGTGGAAGACATACATATACCAAGTTAAAGAATGTTAACTAATCGAACTATCGAAATCATACATGATTTAAATGTTTAAAA]
[-] EMBL CD073137 [TCTCAAACAAAATTTCGAACCGATCAAAGTACATTTCGCCTTGGGTATGTTACAAACCGATAAAAAGAATTATATCAAAGCATCTAAACATTATCAAAATGTTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAGTTCATCCTTCACATATAAAGTCTTATTTACTTCTCGGAGATATAGAGTTAACTGAAAAGGCGAACATAAAACTAGCAAAGCAATATTTTGAAGAAGCGCTGAAATTGGACCCAAAGAACATTCAGGCAAAACATAACCTTTGTGTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGGAATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAACATCTAGAAATTATACGTGGACGTCTGCATTCTCGTGGAAGACATACATATACCAAGTTAAAGAATGTTAACTAATCGAACTATCGAAATCATACATGATTTAAATGTTTAAAA]
[-] EMBL CD096947 [ GATAAAAAGAATTATATCAAAGCATCTAAACATTATCAAAATGTTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAGTTCATCCTTCACATATAAAGTCTTATTTACTTCTCGGAGATATAGAGTTAACTGAAAAGGCGAACATAAAACTAGCAAAGCAATATTTTGAAGAAGCGCTGAAATTGGACCCAAAGAACATTCAGGCAAAACATAACCTTTGTGTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGGAATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAACAT ]
[-] EMBL CD076308 [ agCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAGTTCATCCTTCACATATAAAGTCTTATTTACTTCTCGGAGATATAGAGTTAACTGAAAAGGCGAACATAAAACTAGCAAAGCAATATTTTGAAGAAGCGCTGAAATTGGACCCAAAGAACATTCAGGCAAAACATAACCTTTGTGTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGGAATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAACATCTAGAAATTATACGTGGACGTCTGCATTCTCGTGGAAGACATACATATACCAAGTTAAAGAATGTTAACTAATCGAACTATCGAAATCATACATGATTTAAATGTT ]
[+] EMBL CD082719 [ aagCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTTATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAGTTCATCCTTCACATATAAAGTCTTATTTACTTCTCGGAGATATAGAGTTAACTGANAAGGCGAACATAANACT ]
[+] EMBL CD078684 [ TTATTTACTTCTCGGAGATATAGAGTTAACTGAAAAGGCGAACATAAAACTAGCAAAGCAATATTTTGAAGAAGCGCTGAAATTGGACCCAAAGAACATTCAGGCAAAACATAACCTTTGTGTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGGAATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAACATCTAGAAATTATACGTGGACGTCTGCATTCTCGTGGAAGACATACATATACCAAGTTAAAGAATGTTAACTAATCGAACTATCGAAATCATACATGAT ]
[-] EMBL CD073147 [ TATTTACTTCTCGGAGATATAGAGTTAACTGAAAAGGCGAACATAAAACTAGCAAAGCAATATTTTGAAGAAGCGCTGAAATTGGACCCAAAGAACATTCAGGCAAAACATAACCTTTGTGTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGGAATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAACATCTAGAAATTATACGTGGACGTCTGCATTCTCGTGGAAGACATACATATACCAAGTTAAAGAATGTTAACTAATCGAACTATCGAAATCATACATGATT ]
[-] EMBL CD073767 [ GTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGGAATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAACATATAGAAATTATACGTGGACGTCTGCATTCTCGTGGAAGACATACATATACCAAGTTAAAGAATGTTAACTAATCGAACTATGGAAATCATACATGATTTAAATGTTTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9943#0 TGCTTCTGCCCTAGCTGTCCTTCTGCTCGAATCAATGTTGGCCGCACATATGTAAACCTG 60
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 GGAATGCCAGATAAAGCACAAGAAGCGTATTACGGAGCACTGGAATATTTCCCTAAACCA 120
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 AAGAAAGGTCAAACTTATTATGCTCGTGTTTCTCCCAAAGATCTAATGGTCTTCATCAAT 180
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 CTTGCCAATTTATACATCAATAAATCACCCCCAAGGCTTGAGGATGCTGCTGTTCTTCTT 240
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 CGCCGAGCTATTTCACTGAGATCTGATTTTGTGGACGCATACCAAAACTATGGTAGTGTA 300
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 CTTATCAAGTTAGGAAGGTATAAAGAAGCTGAGGAAGCGTATAGAAATGCTTTATCGTAC 360
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 CAACCGAAAAGCCCAGACTTAAATTACAACTTGGGAGTTGTTCTCTTAGAGTCTCATAAG 420
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 AAATCCGAGGGTTTGTCTTATTTAAACACTGCCTTAACTTACAATCCACAACATGAGCCT 480
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 TCCCTGTTTGCTGTTGCATCAACTCTTGGTGAATCAGCTAATCCTGATGACCAGCTAAGA 540
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 AGCGATAAACATCTATGAACATCTTCTCAAACAAAATTTCGAACCGATCAAAGTACATTT 600
consensus_9943#1 ------------------------TCTCAAACAAAATTTCGAACCGATCAAAGTACATTT 36
************************************
consensus_9943#0 CGCCTTGGGTATGTTACAAACCGATAAAAAGAATTATTATCAAAGCATCTAAACATTATC 660
consensus_9943#1 CGCCTTGGGTATGTTACAAACCGATAAAAAGAATTAT-ATCAAAGCATCTAAACATTATC 95
************************************* **********************
consensus_9943#0 AAAATGTTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTT 720
consensus_9943#1 AAAATGTTATTCTTCTGGATTCTGATCATAAAGGTTCTTTATTTAACCTAGCTCTACTTT 155
************************************************************
consensus_9943#0 ATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAG 780
consensus_9943#1 ATCGAAATCATCTTGGAAAACCAGATGACGCAAGGAATCTCGCACTTCATCTCATCAAAG 215
************************************************************
consensus_9943#0 TTCATCCTTCACATATAAAGTCT-ATTTACTTCTCGGAGAT-TAGAGTTACTTGAA--GG 836
consensus_9943#1 TTCATCCTTCACATATAAAGTCTTATTTACTTCTCGGAGATATAGAGTTAACTGAAAAGG 275
*********************** ***************** ******** **** **
consensus_9943#0 CGACCT--AAACCTGCAAGC--ATTTTTTGAAGAA-CGCTTGATTGGGAC--AAAGAAC- 888
consensus_9943#1 CGAACATAAAACTAGCAAAGCAATATTTTGAAGAAGCGCTGAAATTGGACCCAAAGAACA 335
*** * **** **** ** ********** **** * * **** *******
consensus_9943#0 TTCGGGAAAAA---AAACCTTG-GTTGCTTTG-CAATTAAATA---ACTA-AACAATGG- 938
consensus_9943#1 TTCAGGCAAAACATAACCTTTGTGTTGCTTTGGCAGATGAAGATAAGCTAGAACAATCGG 395
*** ** **** ** * *** ********* ** * ** * *** ****** *
consensus_9943#0 ----ATTCCCTTTAAGGGTTTTGGGGGGAGCGCACCAATTTTCCCATAAAT-ATTTTGGC 993
consensus_9943#1 AATCATGCCTTTTAGAGGCTATAGCCATGGAACCGAAGCCTCAAAACCATTTACTACAAC 455
** ** **** ** * * * * * * * * * * * * *
consensus_9943#0 CCCGGGCCCTTGTTTTTGGGAAA--ACCTTTCCGTAAAG----TGGTCCTTCCCCTTGAA 1047
consensus_9943#1 ATCTAGAAATTATACGTGGACGTCTGCATTCTCGTGGAAGACATACATATACCAAGTTAA 515
* * ** * *** * ** *** * * * ** * **
consensus_9943#0 ATTCTTTTA-------------------------------------------- 1056
consensus_9943#1 AGAATGTTAACTAATCGAACTATCGAAATCATACATGATTTAAATGTTTAAAA 568
* * ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||