|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 909 fasta sequence
[GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT-AAC-ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG-AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA-TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTTATCCATCAT]
[+] EMBL CD183249 [GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCA ]
[+] EMBL CD189732 [ CTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAGGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCA ]
[+] EMBL CD132817 [ TGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGGAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGANNAACAC AGCGTCATCCCAG ]
[-] EMBL CD122733 [ GATGATTATCTTCGCGCTATTTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTGAGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATCCTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTACTACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGT AAC ACTATGGGCGGTGTTGTTCACAAAACTTTGCCAGGATATG AAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGCCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCC ]
[-] EMBL CD157315 [ ATGAAACAAAACGTTATCTAGTCGAAAAACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGTAAACAACTATGGNCGGTGTTGTTCACAAAACTTTGCCAGGATATGAAAGCGGAATCACCGAATAAAATTGTTGATAAGTTAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCTTCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTTGGGAAAAATAT ]
[-] EMBL CD155101 [ CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ]
[-] EMBL CD155020 [ CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ]
[-] EMBL CD155102 [ GAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ]
[-] EMBL CD155021 [ GAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATA TTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGA TTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGA ]
[+] EMBL CD139973 [ ATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCGATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTTATCCATCAT]
consensusID : consensus_9944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 362 fasta sequence
[ACTGCCGCCTTCATAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT]
[+] EMBL CD137042 [ACTGCCGCCTTCATAAGTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT]
[+] EMBL CD185510 [ CAGAAGAAGAGCGTGCTAGGATGCTTAAGAGTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTCAAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATTCTCGAGCGTTATTTGCTGATATCGATCTAGATGGAGACGGTTATCTGAATATCCATGAGGTTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACGACCCATGGGAAGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9944#0 GGTGGTACTTGAAACTGGAAAGCTTGGTTGTTGTCTCTGAGATGATTATCTTCGCGCTAT 60
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 TTCTTCTCACGATCAATTACATTGTCTCGGTTCCTGTCATACCCACTTTTGACAATGCTG 120
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 AGGAAGCTGCCCAATACAAGAAATATTTAGAAGAGGCACCTAAAGCAATAAACGTGGATC 180
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 CTAAAACATTGGATTCGGCTCGAAAAGTTTTTGTAGAAAATTCTTTAGATGATTTATTAC 240
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 TACTTTGGAATACAAGTTTACGGGATAAAGACGATGAAACAAAACGTTATCTAGTCGAAA 300
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 AACTCATAAAAACTCATTTGGAGAAAGCAGCAGATAGTCATCGTAACACTATGGGCGGTG 360
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 TTGTTCACAAAACTTTGCCAGGATATGAAGCGGAATCACCGAATAAAATTGTTGATAAGT 420
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 TAAAAAAATTGGATGATGAGCAGGAAAGGAAGTACCAAGAGCATGTAGCTAAAGAAAAAA 480
consensus_9944#1 --------------------------------------------ACTGCCGCCTTCATAA 16
** * **
consensus_9944#0 GTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGA 540
consensus_9944#1 GTGATATGGTACAGAAATTCAGTAAATTTACAGAAGAAGAGCGTGCTAGGATGCTTAAGA 76
************************************************************
consensus_9944#0 GTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTC 600
consensus_9944#1 GTCTGAAAGAACTGGCTGAAAAACACAAGCGTCATCCCAGAATTCACCAGCCAGGAAGTC 136
************************************************************
consensus_9944#0 AAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATT 660
consensus_9944#1 AAGATCAGCTTAAAGAATATTGGGAAAAATATGAGGGATTGGATGAGCAATCATTCAATT 196
************************************************************
consensus_9944#0 CTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGG 720
consensus_9944#1 CTCGAACGTTATTTGCTGATATCGATTTAGATGGAGACGGTTATCTGAATATCCATGAGG 256
************************************************************
consensus_9944#0 TTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACG 780
consensus_9944#1 TTGAAGCATTTTTACAAACAGAACTTGAAAAGGTTTATAATCCTGAAGATCCAGATTACG 316
************************************************************
consensus_9944#0 ACCCATGGGAAGAAAGACATGATCAAAAAAAAATGCGACAGAAATTTATGGACCGATTCG 840
consensus_9944#1 ACCCATGGGAAGAAAGACATGATCAATAAAAAATGCGACAGAAATT-------------- 362
************************** *******************
consensus_9944#0 ATACAGATGGTAATTACTTGGTTTCTCGTGATGAATTTCTAAGAGGTGTTAATCAGCCTT 900
consensus_9944#1 ------------------------------------------------------------
consensus_9944#0 ATCCATCAT 909
consensus_9944#1 ---------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||