cluster # 9948

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Schistosoma mansoni
cluster # 9948 cluster # 9948 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9948#0 length = 734 sequences # 11

consensus_9948#1 length = 277 sequences # 1

consensusID : consensus_9948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 734
fasta sequence

                              [CGACAAGGCGGATTCGGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATCCTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTTTATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTACTCAGGGATGTTTTANACCATTATTGATAATCAATCTACAATTAGGACTTTACAGAATCTTTTAGGGTCTCGATATAACGGAGTAATAATAGATGGTATTTTCAGAACCTGCTTTTCTCTTAATGGCTATGTTCCTTT]

[+] EMBL CD084061             [  ACAGGGCGGATTCGGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAA                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD133142             [     AGGCGGATTCGGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGA                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD133348             [cgtggAGGCGGATTCGGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGCGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGA                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD188674             [              CGGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGA                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD094225             [               GGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGAT                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD133008             [                                CCTTTTGTCAGCTATGGGTCACGCCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGA                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL BF936234             [                                                       CCCTGTCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCAGTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTTTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGACTAT                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD133675             [                                                                                                             TTTTTGACACAGTTGATGGC TTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATGATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGAT                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD183999             [                                                                                                                                                                                   GATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATCCTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTTTATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTACTCAGGGATGTTTTANACCATTATTGATAATCAATCTACAATTAGGACTTTACAGAATCTTTTAGGGTCTCGATATAACGGAGTAATAATAGATGGTATTTTCAGAACCTGCTTTTCTCTTAATGGCTATGTTCCTTT]
[+] EMBL CD184075             [                                                                                                                                                                                   GATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTCTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATCCTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTTTATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTACTCAGGGATGTTTTAGACCATTATTGATAATCAATCTACAATTAGGACTTTACAGAATCTTTTAGGGTCTCGATATAACGGAGTAATAATAGATGGTATT                                      ]
[-] EMBL BF936295             [                                                                                                                                                                                                                   ATTACTGCGCTCACCTTTTGCTCGCTTTCAGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAATATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGCCGTTTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGTCTATCATG                                                                                                                                                                                                                                                                                 ]




>consensus_9948#0
CGACAAGGCGGATTCGGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTG
TCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCA
GTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATG
ATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTC
AGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAA
TATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGC
CGTCTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAACCAGGATATCATAT
TGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATC
CTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTT
TATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTACTCA
GGGATGTTTTANACCATTATTGATAATCAATCTACAATTAGGACTTTACAGAATCTTTTA
GGGTCTCGATATAACGGAGTAATAATAGATGGTATTTTCAGAACCTGCTTTTCTCTTAAT
GGCTATGTTCCTTT

consensusID : consensus_9948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [AATGAAGGAGTACGAACGCGAACTCCGTCTTTTACACAAGCGTTCATCAATTTCAGAATGATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATCCTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTTTATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTAAAAAAAAAAAAAAAAA]

[-] EMBL AI394941             [AATGAAGGAGTACGAACGCGAACTCCGTCTTTTACACAAGCGTTCATCAATTTCAGAATGATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATCCTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTTTATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTAAAAAAAAAAAAAAAAA]




>consensus_9948#1
AATGAAGGAGTACGAACGCGAACTCCGTCTTTTACACAAGCGTTCATCAATTTCAGAATG
ATGCATAATAACCAGGATATCATATTGTACAATAATTTCGAGAAAAAACGAATACAGACT
ATCATGCCTAGAAGTTTGTTTCATCCTGCTAATAGTTACATGATCAACATTTAGAAAGAG
GATGTTTGGCAAAATATTTTTAGTTTATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAA
TATATATTTCTCAACTAGCTAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9948#0      CGACAAGGCGGATTCGGTCACGGGTCAGATTGCCTTTTGTCAGCTATGGGTCACGCCCTG 60
consensus_9948#1      ------------------------------------------------------------
                                                                                  

consensus_9948#0      TCAACATATAAGGACCCGGAATCTATGCCGGATATCTTCACAGGCCCAGTTTTTGACCCA 120
consensus_9948#1      ------------------------------------------------------------
                                                                                  

consensus_9948#0      GTTGATGGCTTTCCTGAGGGTCGCAACCGTCGAGAGTTCATACTGACTGAGGAAGAAATG 180
consensus_9948#1      ------------------------------------------------------------
                                                                                  

consensus_9948#0      ATAGCTGCAGGACTAAAACCTTACGAACGAGATTACTGCGCTCACCTTTTGCTCGCTTTC 240
consensus_9948#1      ------------------------------------------------------------
                                                                                  

consensus_9948#0      AGGAAATGCGGAGATGAACATGTTATACCAGCTCTTTACTGTTCCGATCTGAAACATAAA 300
consensus_9948#1      ------------------------------------------------------------
                                                                                  

consensus_9948#0      TATCGTCATTGTAAAGAAAGTGACCTGCTGCATAGAATGAAGGAATACGAACGCGAACGC 360
consensus_9948#1      -----------------------------------AATGAAGGAGTACGAACGCGAACTC 25
                                                         ********* ************* *

consensus_9948#0      CGTCTTTTACACAAGCGTACATCAATTTCAGAATGATGCATAATAACCAGGATATCATAT 420
consensus_9948#1      CGTCTTTTACACAAGCGTTCATCAATTTCAGAATGATGCATAATAACCAGGATATCATAT 85
                      ****************** *****************************************

consensus_9948#0      TGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATC 480
consensus_9948#1      TGTACAATAATTTCGAGAAAAAACGAATACAGACTATCATGCCTAGAAGTTTGTTTCATC 145
                      ************************************************************

consensus_9948#0      CTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTT 540
consensus_9948#1      CTGCTAATAGTTACATGATCAACATTTAGAAAGAGGATGTTTGGCAAAATATTTTTAGTT 205
                      ************************************************************

consensus_9948#0      TATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTACTCA 600
consensus_9948#1      TATGCTCTATGGCGTTTACTTTTTTGCTTTGCAAATATATATTTCTCAACTAGCTAAAAA 265
                      ********************************************************   *

consensus_9948#0      GGGATGTTTTANACCATTATTGATAATCAATCTACAATTAGGACTTTACAGAATCTTTTA 660
consensus_9948#1      AAAAAAAAAAAA------------------------------------------------ 277
                         *      *                                                 

consensus_9948#0      GGGTCTCGATATAACGGAGTAATAATAGATGGTATTTTCAGAACCTGCTTTTCTCTTAAT 720
consensus_9948#1      ------------------------------------------------------------
                                                                                  

consensus_9948#0      GGCTATGTTCCTTT 734
consensus_9948#1      --------------