These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 997 fasta sequence [GAGCCATATTCGGCAAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAACAGTCGTTATCAACTCTTCCTTATGTATATAGAACATAGCTTTAATATATATGGCATATCGACAGTCAAAAAAAAAAAAAAAA] [+] EMBL CD081759 [GAGCCATATTCGGCCGAGGTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCCAATGGTTGTGTACAGTTCTTCGTT AAAAGTACTGTTCGGTTTTTGTAA TATTCTCGCTAAATTaa ] [+] EMBL CD159628 [ AAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTCTGGTTTCTCGGTA ] [+] EMBL CD159643 [ AAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATCTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCT ] [+] EMBL CD188600 [ TTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAGCAGAAAACACTGAAGATATATAGTTCTACTGAGTCGACGTGCTAATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTCGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGC ] [-] EMBL CD159680 [ AATTGCTCGCACGCATAAATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTG TTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTGTGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCAT ] [-] EMBL CD075492 [ TTGGTCATAGACCTGAAGGTACAGATGGTGCTGATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTGTCGCTAAATTTAAACA ] [+] EMBL CD180279 [ TTATTGAAACGTCGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTGTTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCGTGTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTATTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGAACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAA ] [-] EMBL AI974974 [ GTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTGATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTTCTGGCCAACATATTTTTCTCTTAATGTGTTCAGGAACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGAACAGTTCTTCGTTAAAAAGAACTGTTCGGTTTTTGTAATTATTCTC ] [-] EMBL AI975161 [ AAGTTGTGTGGCTAAGCACTATTTCTATAAATTTCCCGTTATCGTTCTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGTTACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGAGCGGTTATTGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAAAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTAACTGTTTATAAAGACCGAGTACATTTTTTAAATGAATGCAACAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGCACTGTTCGGTTTTTGTAATTATTCTC ] [-] EMBL AI395161 [ gTCTGGCCCACATA TTTTCTCGCTATGTGTTCAGGTACACGGGTTTTCTGTCTATTTCGGTTACAAGGTTTACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGAATGTTGTTCCTAAACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAACAGTCGTTATCAACTCTTCCTTATGTATATAGAACATAGCTTTAATATATATGGCATATCGACAGTCAAAAAAAAAAAAAAAA] consensusID : consensus_9950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [TGTGTTCAGGTACGCGGCTTTTCAGTATATTTCGGTTACAAGTTAAACTGTATTTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCATAAATTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGAGTTACTTGTGTTGGGAACCTGTTTGTTTAAAAAGACCGAGAACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTGTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAAAAAAAAAAAAAAAACATGCATGACATGCCCTCGCGC] [-] EMBL BF936203 [TGTGTTCAGGTACGCGGCTTTTCAGTATATTTCGGTTACAAGTTAAACTGTATTTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCATAAATTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGAGTTACTTGTGTTGGGAACCTGTTTGTTTAAAAAGACCGAGAACATTTTTTAAATGAATGCAGCAGTTTCCAAATGTTTGTGTACAGTTGTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTCTCGCTAAATTTAAAAAAAAAAAAAAAAACATGCATGACATGCCCTCGCGC] consensusID : consensus_9950#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [TCCCTCTTTTGGNGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATNTTTTAAATGAATGCAGAAGTTNCCAAATGTTGGTGTACAGTTCTCCGNTAAAAAGTNCTGTNCGGTTTTGGNAATTATNCTCGCTAAATTTAAACAGTCGTTATCAACTCTCCCTTATGTATATAGAACATAGCTTTANTATATATGGCATTTCGNACAAAACTAACNNNATCNA] [+] EMBL SM6991 [TCCCTCTTTTGGNGTTACTTGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATNTTTTAAATGAATGCAGAAGTTNCCAAATGTTGGTGTACAGTTCTCCGNTAAAAAGTNCTGTNCGGTTTTGGNAATTATNCTCGCTAAATTTAAACAGTCGTTATCAACTCTCCCTTATGTATATAGAACATAGCTTTANTATATATGGCATTTCGNACAAAACTAACNNNATCNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9950#0 GAGCCATATTCGGCAAATTTGATCGTTGTCGATATTTGTTTTCTTCGCTCTACTACTGAG 60 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 CAGAAAACACTGAAGATATATAGTTCTACTGAGTCGTCGTGCTAATTGCTCGCACGCATA 120 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 AATTTCGTCTTAGCAATGGCGTCTAGGGTTGGTCATAGACCTGAAGGTACAGATGGTGCT 180 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 GATTTTCGTCATAGAGAACGAGTTTGTACTCAGTACAGCTTGAGCCCATTATTGAAACGT 240 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 CGCATCAAATTTGTTTATTTTCTCCACCTGATGTTGTGGGTGCTCATGTTCGCACGCTTG 300 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 TTACCAGAACTGTGCTTAAGACTTGGATTCCGAACAAGGCTTATGGTGGAAAAGTGGCCG 360 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 TTTCCTCAAGGCGAGTTGTGGGAGTACGTTTGGTTTTTCGGTAGTATCTTCCCTACCCTA 420 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 TTCGGATATATTTCATTACAAAGAAGCCGAGCTGGATTAATGCGAGTTTCTCTTACTGGA 480 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 ACTGTCGTCTTCGGTCTTGGCACTGTAGCTGTTGGATGCTTCACAAACGCATTCGAGCTG 540 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 ATGACCTATTACCAAAGTCGTGTGGCTAAGCACTATTTCTATGAATTTCCCGTTATCGTT 600 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------------------------------------------ consensus_9950#0 CTGGCCTACATATTTTTCTCTTTATGTGTTCAGGTACACGGCTTTTCTGTCTATTTCGGT 660 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 ------------------------TGTGTTCAGGTACGCGGCTTTTCAGTATATTTCGGT 36 consensus_9950#0 TACAAGTTATACTGTATCTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCCTA 720 consensus_9950#2 ------------------------------------------------------------ consensus_9950#1 TACAAGTTAAACTGTATTTGGTCTGTCAAAGTGCGCAAGGCGCGGTGATTGTTGTTCATA 96 consensus_9950#0 AACTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGCGTTACT 780 consensus_9950#2 -----------------------------------------TCCCTCTTTTGGNGTTACT 19 consensus_9950#1 AATTCATTTGCTTCACAGTGATCAATGGATGCAGAGAGTATTCCCTCTTTTTGAGTTACT 156 ********** * ****** consensus_9950#0 TGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATTTTTTAAATGAATGCAGCAGT 840 consensus_9950#2 TGTGTTGGGAACCTGACTGTTTAGAAAGACCGAGTACATNTTTTAAATGAATGCAGAAGT 79 consensus_9950#1 TGTGTTGGGAACCTGTTTGTTTAAAAAGACCGAGAACATTTTTTAAATGAATGCAGCAGT 216 *************** ****** ********** **** **************** *** consensus_9950#0 TTCCAAATGTTTGTGTACAGTTCTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTC 900 consensus_9950#2 TNCCAAATGTTGGTGTACAGTTCTCCGNTAAAAAGTNCTGTNCGGTTTTGGNAATTATNC 139 consensus_9950#1 TTCCAAATGTTTGTGTACAGTTGTTCGTTAAAAAGTACTGTTCGGTTTTTGTAATTATTC 276 * ********* ********** * ** ******** **** ******* * ****** * consensus_9950#0 TCGCTAAATTTAAACAGTCGTTATCAACTCTTCCTTATGTATA-TAGAACATAGCTTTAA 959 consensus_9950#2 TCGCTAAATTTAAACAGTCGTTATCAACTCTCCCTTATGTATA-TAGAACATAGCTTTAN 198 consensus_9950#1 TCGCTAAATTTAAAAAAAAAAAAAAAAACATGCATGACATGCCCTCGCGC---------- 326 ************** * * ** * * * * * * * * consensus_9950#0 TATATATGGCATATCGACAGTCAAAAAAAAAAAAAAAA 997 consensus_9950#2 TATATATGGCATTTCG--NACAAAACTAACNNNATCNA 234 consensus_9950#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||