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Schistosoma mansoni
cluster # 9958 cluster # 9958       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9958#0 length = 787 sequences # 10  
consensus_9958#1 length = 676 sequences # 2  

consensusID : consensus_9958#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 787
fasta sequence
                              [TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCGAATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAAAACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACTTGT-CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT]

[+] EMBL AI394763             [TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCGAATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAAAACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAAATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAAAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACTTGT CAGTGACAATTTCCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD136333             [                                                                                                                                                              CCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACCTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTAT                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD136400             [                                                                                                                                                              CCTGCGCCAACCGCAGGTGGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD158699             [                                                                                                                                                               CTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD125157             [                                                                                                                                                                                                                                                                                                                  GCACCTTCCTGTGACTTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTCTTTTTTCTTGAATGAACTTTACGCCAGA                                                                                                           ]
[-] EMBL CD125208             [                                                                                                                                                                                                                                                                                                                   CACCTCCCTGTGACTTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA                                                                                                          ]
[-] EMBL CD182221             [                                                                                                                                                                                                                                                                                                                            GTGAC TGTNCAGTGACNANTTNCANAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA                                                                                                          ]
[+] EMBL CD147324             [                                                                                                                                                                                                                                                                                                                                                                                                   AAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA                                                                                                          ]
[+] EMBL CD183978             [                                                                                                                                                                                                                                                                                                                                                                                                                           ATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGTACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT]
[+] EMBL CD184054             [                                                                                                                                                                                                                                                                                                                                                                                                                           ATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGTACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT]


>consensus_9958#0 TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCG AATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAA AACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGA CTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCC AAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACA AACTGGGCACCTTCCTGTGACTTGTCAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTG TAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCT GTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACT CTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCAT ACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAA CAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCT TGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCT GTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCA AACATAT



consensusID : consensus_9958#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 676
fasta sequence
                              [TAATTTGCGTCGCTGCGATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGTACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACCTCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTTACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC]

[-] EMBL CD115548             [TAATTTGCGTCGCTGCGATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGTACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTT                                                                                                                                                            ]
[-] EMBL CD189687             [                                                                                                                                                                                                      AAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACCTCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTTACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC]


>consensus_9958#1 TAATTTGCGTCGCTGCGATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGA AGCAGAAATAGTATAGTACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGA TTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTC AAGGTGTCCTCAACACCAAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTAT CTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGT TCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAAC TTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCA ATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTT GCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAG CGAAGTGCAGATTGACCTCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGC AGAACCTCGCGAGTGTTACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACA ATAAATCCGAACTTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9958#0      TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCG 60
consensus_9958#1      ------------------------------------------------------------
                                                                                  

consensus_9958#0      AATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAA 120
consensus_9958#1      ------------------------------------------------------------
                                                                                  

consensus_9958#0      AACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGA 180
consensus_9958#1      ------------------------------------------------------------
                                                                                  

consensus_9958#0      CTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCC 240
consensus_9958#1      ------------------------------------------------------------
                                                                                  

consensus_9958#0      AAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACA 300
consensus_9958#1      ------------------------------------------------------------
                                                                                  

consensus_9958#0      AACTGGGCACCTTCCTGTGACTTGTCAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTG 360
consensus_9958#1      ------------------------------------------------------------
                                                                                  

consensus_9958#0      TAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCT 420
consensus_9958#1      ----------------------------------------TAATTTGCG---TCGCTGCG 17
                                                               ***** *      * * * 

consensus_9958#0      GTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGT-GTATAAC 479
consensus_9958#1      ATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGT 77
                       *   * *  **    *       *  *    **     **    *  ** * *****  

consensus_9958#0      TCTATTT---CCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTC 536
consensus_9958#1      ACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTC 137
                       ****     **************************************************

consensus_9958#0      CCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACC 596
consensus_9958#1      CCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACC 197
                      ************************************************************

consensus_9958#0      AAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTT 656
consensus_9958#1      AAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTT 257
                      *********** ************************** *********************

consensus_9958#0      TTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAA 716
consensus_9958#1      TTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAA 317
                      ************************************************************

consensus_9958#0      TCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTG 776
consensus_9958#1      TCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTG 377
                      ************************************************************

consensus_9958#0      ATCAAACATAT------------------------------------------------- 787
consensus_9958#1      ATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAG 437
                      ***********                                                 

consensus_9958#0      ------------------------------------------------------------
consensus_9958#1      ACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTT 497
                                                                                  

consensus_9958#0      ------------------------------------------------------------
consensus_9958#1      ACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACC 557
                                                                                  

consensus_9958#0      ------------------------------------------------------------
consensus_9958#1      TCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTT 617
                                                                                  

consensus_9958#0      -----------------------------------------------------------
consensus_9958#1      ACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC 676
                                                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)