These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 787 fasta sequence [TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCGAATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAAAACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACTTGT-CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT] [+] EMBL AI394763 [TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCGAATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAAAACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAAATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAAAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACTTGT CAGTGACAATTTCCAAAG ] [+] EMBL CD136333 [ CCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACCTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTAT ] [+] EMBL CD136400 [ CCTGCGCCAACCGCAGGTGGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCc ] [-] EMBL CD158699 [ CTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTA ] [+] EMBL CD125157 [ GCACCTTCCTGTGACTTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTCTTTTTTCTTGAATGAACTTTACGCCAGA ] [-] EMBL CD125208 [ CACCTCCCTGTGACTTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA ] [-] EMBL CD182221 [ GTGAC TGTNCAGTGACNANTTNCANAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA ] [+] EMBL CD147324 [ AAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA ] [+] EMBL CD183978 [ ATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGTACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT] [+] EMBL CD184054 [ ATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGTACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT] consensusID : consensus_9958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence [TAATTTGCGTCGCTGCGATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGTACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACCTCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTTACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC] [-] EMBL CD115548 [TAATTTGCGTCGCTGCGATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGTACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTT ] [-] EMBL CD189687 [ AAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACCTCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTTACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9958#0 TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCG 60 consensus_9958#1 ------------------------------------------------------------ consensus_9958#0 AATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAA 120 consensus_9958#1 ------------------------------------------------------------ consensus_9958#0 AACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGA 180 consensus_9958#1 ------------------------------------------------------------ consensus_9958#0 CTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCC 240 consensus_9958#1 ------------------------------------------------------------ consensus_9958#0 AAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACA 300 consensus_9958#1 ------------------------------------------------------------ consensus_9958#0 AACTGGGCACCTTCCTGTGACTTGTCAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTG 360 consensus_9958#1 ------------------------------------------------------------ consensus_9958#0 TAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCT 420 consensus_9958#1 ----------------------------------------TAATTTGCG---TCGCTGCG 17 ***** * * * * consensus_9958#0 GTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGT-GTATAAC 479 consensus_9958#1 ATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGT 77 * * * ** * * * ** ** * ** * ***** consensus_9958#0 TCTATTT---CCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTC 536 consensus_9958#1 ACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTC 137 **** ************************************************** consensus_9958#0 CCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACC 596 consensus_9958#1 CCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACC 197 ************************************************************ consensus_9958#0 AAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTT 656 consensus_9958#1 AAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTT 257 *********** ************************** ********************* consensus_9958#0 TTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAA 716 consensus_9958#1 TTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAA 317 ************************************************************ consensus_9958#0 TCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTG 776 consensus_9958#1 TCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTG 377 ************************************************************ consensus_9958#0 ATCAAACATAT------------------------------------------------- 787 consensus_9958#1 ATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAG 437 *********** consensus_9958#0 ------------------------------------------------------------ consensus_9958#1 ACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTT 497 consensus_9958#0 ------------------------------------------------------------ consensus_9958#1 ACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACC 557 consensus_9958#0 ------------------------------------------------------------ consensus_9958#1 TCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTT 617 consensus_9958#0 ----------------------------------------------------------- consensus_9958#1 ACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC 676 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||