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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 787 fasta sequence
[TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCGAATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAAAACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACTTGT-CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT]
[+] EMBL AI394763 [TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCGAATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAAAACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAAATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAAAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACTTGT CAGTGACAATTTCCAAAG ]
[+] EMBL CD136333 [ CCTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACAAACTGGGCACCTTCCTGTGACCTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTAT ]
[+] EMBL CD136400 [ CCTGCGCCAACCGCAGGTGGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCc ]
[-] EMBL CD158699 [ CTGCGCCAACCGCAGGTTGGACTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCCAAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTA ]
[+] EMBL CD125157 [ GCACCTTCCTGTGACTTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTCTTTTTTCTTGAATGAACTTTACGCCAGA ]
[-] EMBL CD125208 [ CACCTCCCTGTGACTTGT CAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA ]
[-] EMBL CD182221 [ GTGAC TGTNCAGTGACNANTTNCANAGTCGTTCCAAAAGACCTGTAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA ]
[+] EMBL CD147324 [ AAGCTGTGTATCTAAAATTTCCAAATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAA ]
[+] EMBL CD183978 [ ATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGTACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT]
[+] EMBL CD184054 [ ATCAGATCCTGTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGTGTATAACTCTATTTCCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGTACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATAT]
consensusID : consensus_9958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence
[TAATTTGCGTCGCTGCGATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGTACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACCTCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTTACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC]
[-] EMBL CD115548 [TAATTTGCGTCGCTGCGATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGTACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTCCCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACCAAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTT ]
[-] EMBL CD189687 [ AAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTTTTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAATCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTGATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAGACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTTACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACCTCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTTACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9958#0 TTTTTTTTTTTTTNCCAACAACTAAAAAAATTATTTAGTATCACAACCGAAATCAAATCG 60
consensus_9958#1 ------------------------------------------------------------
consensus_9958#0 AATTCTTCAAAAGCCTGTTTTTCAATTCTGCAAAAATTATCCTTGGGAATAATCCTTAAA 120
consensus_9958#1 ------------------------------------------------------------
consensus_9958#0 AACCTGTGTTCAAACCATGTAAAGCGGCCGTACGGAAACCTGCGCCAACCGCAGGTTGGA 180
consensus_9958#1 ------------------------------------------------------------
consensus_9958#0 CTGGTTTGTCAGTAATCATCAAGATTGAAGTCATCCTCGAAATCAACATCACCACCCGCC 240
consensus_9958#1 ------------------------------------------------------------
consensus_9958#0 AAATGATTAAAATCGAGTTGGTAGCGTAGAATACCACCTATCCCACCGAAGCCGCGAACA 300
consensus_9958#1 ------------------------------------------------------------
consensus_9958#0 AACTGGGCACCTTCCTGTGACTTGTCAGTGACAATTTCCAAAGTCGTTCCAAAAGACCTG 360
consensus_9958#1 ------------------------------------------------------------
consensus_9958#0 TAGTTTAGGGCGAGCCAGTCTAAAAGAAGCTGTGTATCTAAAATTTCCAAATCAGATCCT 420
consensus_9958#1 ----------------------------------------TAATTTGCG---TCGCTGCG 17
***** * * * *
consensus_9958#0 GTCTCAGGGTCAACAAAATGTCGGCGGTCTGTCTCCTGGTCAGGACGCAAGT-GTATAAC 479
consensus_9958#1 ATTGTAAGTGCACTTTATCACTTACAATTGCGCTTGACATCGAAGCAGAAATAGTATAGT 77
* * * ** * * * ** ** * ** * *****
consensus_9958#0 TCTATTT---CCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTC 536
consensus_9958#1 ACTATACTAACCTTCAGAATTTGGAACTTTGAGGACATAGCGATTTACACTTAGGTTTTC 137
**** **************************************************
consensus_9958#0 CCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACC 596
consensus_9958#1 CCATACCACGAGGGTCTCCACAGCACCCATCTCTAAGGACTTCAAGGTGTCCTCAACACC 197
************************************************************
consensus_9958#0 AAAACAGTACTTTCCACTATCTTGAGATATTTCGTCAAAGTATCTTTGAATGAGTTTTTT 656
consensus_9958#1 AAAACAGTACTCTCCACTATCTTGAGATATTTCGTCAAGGTATCTTTGAATGAGTTTTTT 257
*********** ************************** *********************
consensus_9958#0 TTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAA 716
consensus_9958#1 TTCTTGAATGAACTTTACGCCAGAAAGTGTATCTGTGGCCAGTTCGATAGCTTGGTTAAA 317
************************************************************
consensus_9958#0 TCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTG 776
consensus_9958#1 TCCTGTCTCACCACCATATGATATATCTACTGTTTTAATCAACTTTGCTTGAAGTCTCTG 377
************************************************************
consensus_9958#0 ATCAAACATAT------------------------------------------------- 787
consensus_9958#1 ATCAAACATATCAGATTGTCCTAAGTCACTCTTGAAGTCAGCAATCCCTGCAAGAATAAG 437
***********
consensus_9958#0 ------------------------------------------------------------
consensus_9958#1 ACCTTCAATATTTGGTCGATCGTTTGTTATAAAAAGTTGAGTTGCTGTCTCGGCTACTTT 497
consensus_9958#0 ------------------------------------------------------------
consensus_9958#1 ACGAACATAATTGTGCCGCTTTTCCATCCGCAAACGTGCGAAGCGAAGTGCAGATTGACC 557
consensus_9958#0 ------------------------------------------------------------
consensus_9958#1 TCCACGACCATGTTTCTTCGGCAATTCTACCGTAAATTTGTGCAGAACCTCGCGAGTGTT 617
consensus_9958#0 -----------------------------------------------------------
consensus_9958#1 ACCCGATAATGTCCCGAATAAAGCTCCATTGCCATCAACTACAATAAATCCGAACTTGC 676
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||