cluster # 996

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Schistosoma mansoni
cluster # 996 cluster # 996 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_996#0 length = 523 sequences # 1

consensus_996#1 length = 232 sequences # 1

consensusID : consensus_996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [GAAGAAGCGCTGGAAGTGGATAGGACACACATTTAGGAAATCACTCAACTGTGTCACAAGGCAAGCCCTCACATGGAATCCTGAAGGCCAAATGAGAAGAGGAAGACCAAAGAACACGTTAGGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAACTAGAAAAGAAGGCCTAGAACAGAGTGGATCGGAGAATGCTGGTTAGCGGCTTATGCTCCATTGGGAGTAACAGGCAGGTGTATTCGCTCCATCATGTCTAGATCATGAGATTTTAACCAAAAATAATTGGGTACATAAAATGATTGGAACAATAAGTTTAGTGAATGCAATCAAATCATGGGATATTGAATTAGAAAAACACTGGGTCAAACAAAAATTATTATATTTCTCAACACATTACCCTAATGTTTTACTTAAAGCCCAACAATGGAATGCAAAGAATCATCAACAATCTGACCTAAAAGAAAGTATGACTAAAATCACATCAACCACAATTACTCCTACAGTAA]

[+] EMBL CD095641             [GAAGAAGCGCTGGAAGTGGATAGGACACACATTTAGGAAATCACTCAACTGTGTCACAAGGCAAGCCCTCACATGGAATCCTGAAGGCCAAATGAGAAGAGGAAGACCAAAGAACACGTTAGGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAACTAGAAAAGAAGGCCTAGAACAGAGTGGATCGGAGAATGCTGGTTAGCGGCTTATGCTCCATTGGGAGTAACAGGCAGGTGTATTCGCTCCATCATGTCTAGATCATGAGATTTTAACCAAAAATAATTGGGTACATAAAATGATTGGAACAATAAGTTTAGTGAATGCAATCAAATCATGGGATATTGAATTAGAAAAACACTGGGTCAAACAAAAATTATTATATTTCTCAACACATTACCCTAATGTTTTACTTAAAGCCCAACAATGGAATGCAAAGAATCATCAACAATCTGACCTAAAAGAAAGTATGACTAAAATCACATCAACCACAATTACTCCTACAGTAA]




>consensus_996#0
GAAGAAGCGCTGGAAGTGGATAGGACACACATTTAGGAAATCACTCAACTGTGTCACAAG
GCAAGCCCTCACATGGAATCCTGAAGGCCAAATGAGAAGAGGAAGACCAAAGAACACGTT
AGGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAACTAGAAAA
GAAGGCCTAGAACAGAGTGGATCGGAGAATGCTGGTTAGCGGCTTATGCTCCATTGGGAG
TAACAGGCAGGTGTATTCGCTCCATCATGTCTAGATCATGAGATTTTAACCAAAAATAAT
TGGGTACATAAAATGATTGGAACAATAAGTTTAGTGAATGCAATCAAATCATGGGATATT
GAATTAGAAAAACACTGGGTCAAACAAAAATTATTATATTTCTCAACACATTACCCTAAT
GTTTTACTTAAAGCCCAACAATGGAATGCAAAGAATCATCAACAATCTGACCTAAAAGAA
AGTATGACTAAAATCACATCAACCACAATTACTCCTACAGTAA

consensusID : consensus_996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [CAAAGTTTGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGCGCCTGTTTCTGATTTCTTACTCCGCTGGAGTCTGGTTTCTTCTCTCTCACAGTAGGTTGTTGCTGATAGTGTCTGGCCAATGGATCCGAAGTATTTCGTGTAGACAAGCGTTAATAAACACCTGTATCTTCTGGATGATGGCTAAGGACTCTACATAATATTATCTATAATGGCAGTACCAAATAAA]

[+] EMBL CD067533             [CAAAGTTTGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGCGCCTGTTTCTGATTTCTTACTCCGCTGGAGTCTGGTTTCTTCTCTCTCACAGTAGGTTGTTGCTGATAGTGTCTGGCCAATGGATCCGAAGTATTTCGTGTAGACAAGCGTTAATAAACACCTGTATCTTCTGGATGATGGCTAAGGACTCTACATAATATTATCTATAATGGCAGTACCAAATAAA]




>consensus_996#1
CAAAGTTTGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGCGCCTGTTTCTGATTT
CTTACTCCGCTGGAGTCTGGTTTCTTCTCTCTCACAGTAGGTTGTTGCTGATAGTGTCTG
GCCAATGGATCCGAAGTATTTCGTGTAGACAAGCGTTAATAAACACCTGTATCTTCTGGA
TGATGGCTAAGGACTCTACATAATATTATCTATAATGGCAGTACCAAATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_996#0      GAAGAAGCGCTGGAAGTGGATAGGACACACATTTAGGAAATCACTCAACTGTGTCACAAG 60
consensus_996#1      ------------------------------------------------------------
                                                                                 

consensus_996#0      GCAAGCCCTCACATGGAATCCTGAAGGCCAAATGAGAAGAGGAAGACCAAAGAACACGTT 120
consensus_996#1      ------------------------------------------------------------
                                                                                 

consensus_996#0      AGGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAACTAGAAAA 180
consensus_996#1      ------------------------------------------------------------
                                                                                 

consensus_996#0      GAAGGCCTAGAACAGAGTGGATCGGAGAATGCTGGTTAGCGGCTTATGCTCCATTGGGAG 240
consensus_996#1      ------------------------------------CAAAGTTTGGTGATTTCCTCAATG 24
                                                          *  *  *  ** *    *    *

consensus_996#0      TAACAGGCAGGTGTATTCGCTCCATCATGTCTAGATCATGAGATTTTAACCAAAAATAAT 300
consensus_996#1      TGT------GTCCTATCCACTTC--CAGCGCCTGTTTCTGATTTCTTACTCCGCTGGAGT 76
                     *        *   *** * ** *  **   *  * *  ***  * ***  *      * *

consensus_996#0      TGGGTACATAAAATGATTGGAACAATAAGTTTAGTGAATGCAATCAAATCATGGGATATT 360
consensus_996#1      CTGGTTTCT----TCTCTCTCACAGTAGGTT--GTTGCTG--ATAGTGTC--TGGCCAAT 126
                       ***   *    *   *   *** ** ***  **   **  **    **   **  * *

consensus_996#0      GAATTAGAAAAACACTGGGTCAAACAAAAATTATTATATTTCTCAACACATTACCCTAAT 420
consensus_996#1      GGATCCGAAGTATTTCGTGT-AGACAAGCGTTAATAAACACCT----GTATCTTCTGGAT 181
                     * **  ***  *    * ** * ****   *** ** *   **      **   *   **

consensus_996#0      GTTTTACTTAAAGCCCAACAATGGAATGCAAAGAATCATCAACAATCTGACCTAAAAGAA 480
consensus_996#1      GATG-GCTAAGGACTCTACATAATATTATCTATAAT----GGCAGTACCAAATAAA---- 232
                     * *   ** *   * * ***    * *    * ***      ** *   *  ****    

consensus_996#0      AGTATGACTAAAATCACATCAACCACAATTACTCCTACAGTAA 523
consensus_996#1      -------------------------------------------