cluster # 9961

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Schistosoma mansoni
cluster # 9961 cluster # 9961 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9961#0 length = 1099 sequences # 9

consensus_9961#1 length = 823 sequences # 1
consensus_9961#2 length = 438 sequences # 2

consensusID : consensus_9961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1099
fasta sequence

                              [TCGNAGCCAAAAATTCGGCACGAGGGCTGATACATGGATGACGGAGTTATTACCTAGATCAAGTGATCTTAATTCTTTGAAATCATGTAAATTTCGTCAAGACATATCAACACCTCTTCATGATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCAGACAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAAGATGGCAAAGATTGC-TTCGGATTGTCAAATTTCAAAACAAAAGTCAAGTTTACTTGAATTACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACATAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCTTCCTCACCACCTA--GTAAATCAATAAGACGACCTTTTGATCGTGAAAAGGATCTTGAA-CGGTCCCGAG-TTGATACAGCTGCTCGAAAGGCAATAATTGAACA-TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAAATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAGAAATATTCTTGTCTACTAACTTCTATTCAAGAAAAAGTATATTTGTATAACATCTAAAGATGTAACAAGCAGCGCCTTTTCTTGAATTTTCTCTTTCTGGGCTGCGGTTTAATCTTGAAGCTTTCATCACCTCTCTGTACAACATCTTCAGCATAAACTTGAGGTAGACTTAAGCTATTTGAAATCCTTCATACATAACTGACTTCTCTTAT--GGACTTTGATTTATGTTGTTTTTT-CCTATTGGAAAGCAATAAATATTCAGA]

[+] EMBL CD082908             [TCGNAGCCAAAAATTCGGCACGAGGGCTGATACATGGATGACGGAGTTATTACCTAGATCAAGTGATCTTAATTCTTTGAAATCATGTAAATTTCGTCAAGACATATCAACACCTCTTCATGATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCAGACAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAAGATGGCAAAGATTGC TTCGGATTGTCAAATTTCAAAACAAAAGTCAAGTTTACTTGAATTACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACATAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCTTCCTCACCACCTA  GTAAATCAATAAGACGACCTTTTGATCGTGAAAAGGATCTTGAA CGGTCCCGAG TTGATACAGCTGCTCGAAAGGCAATAATTGAACA TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD076492             [                                                                                                                                                                                                                                                            TGCTTTCGGATTGTCAAATTTCAAAACAAAAGTCAAGTTTACTTGAATTACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACATAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCTTCCTCACCACCTA  GTAAATCAATAAGACGACCTTTTGATCGTGAAAAGGATCTTGAA CGGTCCCGAG TTGATACAGCTGCTCGAAAGGCAATAATTGAACA TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAAATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAGAAATATTCTTGTCTACTAACTTCTATTCAAGAAAAAGTATATTTGT                                                                                                                                                                                                                            ]
[+] EMBL CD082574             [                                                                                                                                                                                                                                                                                                                                                                         TAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCTTCCTCACCACCTA  GTAAATCAATAAGACGACCTTTTGATCGTGAAAAGGATCTTGAA CGGTCCCGAG TTGATACAGCTGCTCGAAAGGCAATAATTGAACA TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAAATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAGAAATATTCTTGTCTACTAACCTCTATTCAAGAAAAAGTATATTTGTATAACATCTAAAGATGTAACAAGCAGCGCCTTTTCTTGAATTTTCTCTTTCTGGGCTGCGGTTTAATCTTGAAGCTNTCATCACCTCTCTGTACAACATCTTCAGCATAAACTTGAGGTAGACTTAAGCTATNTGAAATCCTTCATACATAACTGACTTCTCTTATGGGGAC TTGA TTATGTTGNTNTTT CCTATGGGAAAGC ATAAATATTCAG ]
[+] EMBL CD090756             [                                                                                                                                                                                                                                                                                                                                                                         TAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCTTCCTCACCACCTA  GTAAATCAATAAGACGACCTTTTGATCGTGAAAAGGATCTTGAA CGGTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD139594             [                                                                                                                                                                                                                                                                                                                                                                             CAT AATCCANGGAGCAT AAAGNAAGCGTGAAAAGTCATCATCANCATCTTNCTCANCA CTANNGTAAATCAATAGNACGACCTTTTGATCGTGAAAAGGATC TGAANCGGT CCGAGTTTGATACAGCTGCTCGAAAGCAAATAATTG ACATTTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAAATAAGCATGAATA                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD197033             [                                                                                                                                                                                                                                                                                                                                                                                                      AGCGTGAAAAGTCATCATCACCATCTTCCTCACCACCTA  GTAAATCAGTAAGACGACCTTTTGATCGTGAAAAGGATCTTGAA CGGTCCCGAG TTGATACAGCTGCTCGAAGGGCAATAATTGAACA TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAAT                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD094368             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAGACGACTTTTGGATCGTGAAAAGGATCTTGAA CGGTCCCGAG TTGATACAGCTGCTCGAAAGGCAATAATTGAACA TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAAATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAGAAATATTCTTGTCTACTAACTTCTATTCAAGAAAAAGTATATTTGTATAACATCTAAAGATGTAACAAGCAGCGCCTTTTCTTGAATTTTCTCTTTCTGGGCTGCGGTTTAATCTTGAAGCTTTCATCACCTCTCTGTACAACATCTTCAG                                                                                                                   ]
[-] EMBL CD076172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGAG TTGATACAGCTGCTCGAAAGGCAATAATTGAACA TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAAATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAGAAATATTCTTGTCTACTAACCTCTATTCAAGAAAAAGTATATTTGTATAACATCTAAAGATGTAACAAGCAGCGCCTTTTCTTGAATTTTCTCTTTCTGGGCTGCGGTTTAATCTTGAAGCTTTCATCACCTCTCTGTACAACATCTTCAGCATAAACTTGAGGTAGACTTAAGCTATTTGAAATCCTTCATACATAACTGACTTCTCTTAT  GGACTTTGATTTATGTTGTTTTTTCCCTATTGGAAGCCAATAAATATTCAGA]
[-] EMBL CD074726             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGCAATAATTGAACA TTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCCCGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAAATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAGAAATATTCTTGTTTACTAACTTCTATTCAAGAAAAAGTATATTTGTATAACATTTAAAGATGTAACAAGCAGCGCCTTTTCTTGAATTTTCTCTTTTTGGGCTGCGGTTTAATCTTGAAGCTTTCATCACCTCTCTGTACAACATTTTCAGCATAAACTTGAGGTAGACTTAAGCTATTTGAAATCCTTCATACATAACTGACTTTTCTTAT  GGACTTTGATTTATGTTGTTTTTT CCTATTGG AAGCAATAAATATTCAGA]




>consensus_9961#0
TCGNAGCCAAAAATTCGGCACGAGGGCTGATACATGGATGACGGAGTTATTACCTAGATC
AAGTGATCTTAATTCTTTGAAATCATGTAAATTTCGTCAAGACATATCAACACCTCTTCA
TGATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCA
GACAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAA
GATGGCAAAGATTGCTTCGGATTGTCAAATTTCAAAACAAAAGTCAAGTTTACTTGAATT
ACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACA
TAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCTTCCTC
ACCACCTAGTAAATCAATAAGACGACCTTTTGATCGTGAAAAGGATCTTGAACGGTCCCG
AGTTGATACAGCTGCTCGAAAGGCAATAATTGAACATTCCAAAAAGCTTTCTAGTCGTTT
CAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTTTTTC
GAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTT
AATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTT
ATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAAGCAA
ATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAGAAAT
ATTCTTGTCTACTAACTTCTATTCAAGAAAAAGTATATTTGTATAACATCTAAAGATGTA
ACAAGCAGCGCCTTTTCTTGAATTTTCTCTTTCTGGGCTGCGGTTTAATCTTGAAGCTTT
CATCACCTCTCTGTACAACATCTTCAGCATAAACTTGAGGTAGACTTAAGCTATTTGAAA
TCCTTCATACATAACTGACTTCTCTTATGGACTTTGATTTATGTTGTTTTTTCCTATTGG
AAAGCAATAAATATTCAGA

consensusID : consensus_9961#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 823
fasta sequence

                              [ATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCAGACAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAAGATGGCAAAGATAAAAGTCAAGTTTACTTGAATTACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACATAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCNNNNNNNNNNNNNNNNNNNNNNNNNAGACGACCTTTTGATCGTGAAAAGGATCTTGAACGGTCCCGAGTTGATACAGCTGCTCGAAAGGCAATAATTGAACATTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTNTACATTNTATATCGTTAAGCAAATGTGTGTTAGTACAGAATATTCTTGCTACTAACTCTATTCAGAAAAGTATTNTGTATACATCTAAGATGTACAGCAGCGCCTTTCTTGAATTTCTCTTCTGGGCTGCGTTTAATCTGAGCTTCATCACTTCTGTCACATCTCAGATAACTTGAGTAGACTAGCTATTGAATCTCAACTACTGATCCTATGACTTGATTATGTGTTTTCTATGAACATAAT]

[+] EMBL CD080894             [ATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCAGACAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAAGATGGCAAAGATAAAAGTCAAGTTTACTTGAATTACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACATAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCNNNNNNNNNNNNNNNNNNNNNNNNNAGACGACCTTTTGATCGTGAAAAGGATCTTGAACGGTCCCGAGTTGATACAGCTGCTCGAAAGGCAATAATTGAACATTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTNTACATTNTATATCGTTAAGCAAATGTGTGTTAGTACAGAATATTCTTGCTACTAACTCTATTCAGAAAAGTATTNTGTATACATCTAAGATGTACAGCAGCGCCTTTCTTGAATTTCTCTTCTGGGCTGCGTTTAATCTGAGCTTCATCACTTCTGTCACATCTCAGATAACTTGAGTAGACTAGCTATTGAATCTCAACTACTGATCCTATGACTTGATTATGTGTTTTCTATGAACATAAT]




>consensus_9961#1
ATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCAGA
CAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAAGA
TGGCAAAGATAAAAGTCAAGTTTACTTGAATTACATGAGAATAAACTCAAACACAAATTA
AAGAAAAAACGTGAAAAGAAATCCAAGAAACATAAGCATAAATCCAAGGAGCATAAAAGA
AAGCGTGAAAAGTCATCATCACCATCNNNNNNNNNNNNNNNNNNNNNNNNNAGACGACCT
TTTGATCGTGAAAAGGATCTTGAACGGTCCCGAGTTGATACAGCTGCTCGAAAGGCAATA
ATTGAACATTCCAAAAAGCTTTCTAGTCGTTTCAGTCATGGTAGCCAACAGTATTTATAG
CGTTCACATTTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCATT
TTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTTGT
TTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTNTACATTNTATATCGTTAAGC
AAATGTGTGTTAGTACAGAATATTCTTGCTACTAACTCTATTCAGAAAAGTATTNTGTAT
ACATCTAAGATGTACAGCAGCGCCTTTCTTGAATTTCTCTTCTGGGCTGCGTTTAATCTG
AGCTTCATCACTTCTGTCACATCTCAGATAACTTGAGTAGACTAGCTATTGAATCTCAAC
TACTGATCCTATGACTTGATTATGTGTTTTCTATGAACATAAT

consensusID : consensus_9961#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 438
fasta sequence

                              [ATGGTATAATAAAGCTGACATGTCTAGAAAAATGTTGGATTCCAAAAATGACAATCGAGTTGTTATTGGACCAGTTTTTCAACCTGATGATCTTGTTCCATCCACTGGGATAGGCCCTGCATTACCCTCTGATTTATTCAAGCAGAAATTCAATAAAGATTCGGAATCAGTCAGTTATAAATCTTCGACTGACTTTGGAGAGATTGATACTATCGGTCCTTTACTACCAGGACAAGAAATAAGTGAAGAATGGCGGCATCTGAAATCTGGTTATTCGGGGGGTTTAAGCTGTGTAATGGTGAAGAATGAAAAACTTAAACGTGATACATGGATGACGGAGTTATTACCTAGATCAAGTGATCTTAATTCTTTGAAATCATGTAAATTTCGTCAAGACATATCAACACCTCTTCATGATGCATCATGGTTCACTTCACC]

[+] EMBL CD140233             [ATGGTATAATAAAGCTGACATGTCTAGAAAAATGTTGGATTCCAAAAATGACAATCGAGTTGTTATTGGACCAGTTTTTCAACCTGATGATCTTGTTCCATCCACTGGGATAGGCCCTGCATTACCCTCTGATTTATTCAAGCAGAAATTCAATAAAGATTCGGAATCAGTCAGTTATAAATCTTCGACTGACTTTGGAGAGATTGATACTATCGGTCCTTTACTACCAGGACAAGAAATAAGTGAAGAATGGCGGCATCTGAAATCTGGTTATTCGGGGGGTTTAAGCTGTGTAATGGTGAAGAATGAAAAACTTAAACGTGATACATGGATGACGGAGTTATTACCTAGATCAAGTGATCTTAATTCTTTGAAATCATGTAAATTTCGTCAAGACATATCAACACCTCTTCATGATGCATCATGGTTCACTTCACC]
[+] EMBL CD140189             [ATGGTATAATAAAGCTGACATGTCTAGAAAAATGTTGGATTCCAAAAATGACAATCGAGTTGTTATTGGACCAGTTTTTCAACCTGATGATCTTGTTCCATCCACTGGGATAGGCCCTGCATTACCCTCTGATTTATTCAAGCAGAAATTCAATAAAGATTCGGAATCAGTCAGTTATAAATCTTCGACTGACTTTGGAGAGATTGATACTATCGGTCCTTTACTACCAGGACAAGAAATAAGTGAAGAATGGCGGCATCTGAAATCTGGTTATTCGGGGGGTTTAAGCTGTGTAATGGTGAAGAATGAAAAACTTAAACGTGATACATGGATGACGGAGTTATTACCTAGATCAAGTGATCTTAATTCTTTGAAATCATGTAAATTTCGTCCAGACATATCAACACCTCTTCATGATGCATCATGGTTCACTTC   ]




>consensus_9961#2
ATGGTATAATAAAGCTGACATGTCTAGAAAAATGTTGGATTCCAAAAATGACAATCGAGT
TGTTATTGGACCAGTTTTTCAACCTGATGATCTTGTTCCATCCACTGGGATAGGCCCTGC
ATTACCCTCTGATTTATTCAAGCAGAAATTCAATAAAGATTCGGAATCAGTCAGTTATAA
ATCTTCGACTGACTTTGGAGAGATTGATACTATCGGTCCTTTACTACCAGGACAAGAAAT
AAGTGAAGAATGGCGGCATCTGAAATCTGGTTATTCGGGGGGTTTAAGCTGTGTAATGGT
GAAGAATGAAAAACTTAAACGTGATACATGGATGACGGAGTTATTACCTAGATCAAGTGA
TCTTAATTCTTTGAAATCATGTAAATTTCGTCAAGACATATCAACACCTCTTCATGATGC
ATCATGGTTCACTTCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9961#0      TCGNAGCCAAAAATTCGGCACGAGGGCTGATACATGGATGACGGAGTTATTACCTAGATC 60
consensus_9961#1      ------------------------------------------------------------
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      AAGTGATCTTAATTCTTTGAAATCATGTAAATTTCGTCAAGACATATCAACACCTCTTCA 120
consensus_9961#1      ------------------------------------------------------------
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      TGATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCA 180
consensus_9961#1      --ATGCATCATGGTTCACTTCACCAAGTGATGATTCAAGACAATTGTTAACTAGTAGTCA 58
consensus_9961#2      ------------------------------------------ATGGTATAATAAAGCTGA 18
                                                                ** **  * **    * *

consensus_9961#0      GACAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAA 240
consensus_9961#1      GACAAATCAATCAATAAAGGATACTCTAAAATATCAACGAAATGTAGCATACGATCAGAA 118
consensus_9961#2      CATGTCTAGAAAAATGTTGGATTC-CAAAAATGACAATCGAGT-TGTTATTGGACCAGTT 76
                       *    *  *  ***   **** * * *****  ***   * * *   **  ** ***  

consensus_9961#0      GATGGCAAAGATTGCTTCGGATTGTCAAATTTCAAAACAAAAGTCAAGTTTACTTGAATT 300
consensus_9961#1      GATGGCAAAGAT--------------------------AAAAGTCAAGTTTACTTGAATT 152
consensus_9961#2      TTTCAACCTGATGATCT------------------------TGTTCCATCCACTGGGATA 112
                        *      ***                              **    *  *** * ** 

consensus_9961#0      ACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACA 360
consensus_9961#1      ACATGAGAATAAACTCAAACACAAATTAAAGAAAAAACGTGAAAAGAAATCCAAGAAACA 212
consensus_9961#2      GGCCCTGCATTA-CCCTCTGATTTATTCAAGCAGAAATTCAATAAAGATTCGGAATCAGT 171
                            * ** * * *    *   *** *** * ***    * **  * **  *   *  

consensus_9961#0      TAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCTTCCTC 420
consensus_9961#1      TAAGCATAAATCCAAGGAGCATAAAAGAAAGCGTGAAAAGTCATCATCACCATCNNNNNN 272
consensus_9961#2      CAGTTATAAATCTTCGACTGACTTTGGAGAGATTGA-----TACTATCGGTCCTTTACTA 226
                       *   *******   *    *     ** **  ***      *  ***            

consensus_9961#0      ACCACCTAGTAAATCAATAAGACGACCTTTTGATCGTGAAAAGGATCTTGAACGGTCCCG 480
consensus_9961#1      NNNNNNNNNNNNNNNNNNNAGACGACCTTTTGATCGTGAAAAGGATCTTGAACGGTCCCG 332
consensus_9961#2      CCAGGACAAGAAATAAGTGAAGAATGGCGGCATCTGAAATCTGGTTATTCGGGGGGTTTA 286
                                         *               *  *   ** * **    **     

consensus_9961#0      AGTTGATACAGCTGCTCGAAAGGCAATAATTGAACATTCCAAAAAGCTTTC----TAGTC 536
consensus_9961#1      AGTTGATACAGCTGCTCGAAAGGCAATAATTGAACATTCCAAAAAGCTTTC----TAGTC 388
consensus_9961#2      AGCTG-TGTAATGGTGAAGAATGAAAAACTTAAACGTGATACATGGATGACGGAGTTATT 345
                      ** ** *  *   *     ** * ** * ** *** *   * *  * *  *    *  * 

consensus_9961#0      GTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTTAAAGTCTTGTTTGTT 596
consensus_9961#1      GTTTCAGTCATGGTAGCCAACAGTATTTATAGCGTTCACATTTTT--------------- 433
consensus_9961#2      ACCTAGATCAAGTGATCTTAATTCTTTGAAATCATGTAAATTTCG--------------- 390
                         *   *** *  * *  *     ** * * * *  * ****                 

consensus_9961#0      TTTCGAAACACGTTTTCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCA 656
consensus_9961#1      ---------------TCCTTCATATAATCTCTTCTAAACTGTTGGCATATTATGGTTCCA 478
consensus_9961#2      --------------TCAAGACATATCAACACCTCTTCA----TGATGCATCATGGTTC-A 431
                                          ***** * * * ***  *    **    ** ******* *

consensus_9961#0      TTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTT 716
consensus_9961#1      TTTTAATCATTGTTCATTTGCTTTTTTGTTACAAAATCTCTTCAGTTAGTTAAAAATTTT 538
consensus_9961#2      CTTCACC----------------------------------------------------- 438
                       ** *                                                       

consensus_9961#0      GTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTTTACATTTTATATCGTTAA 776
consensus_9961#1      GTTTATTCATTTCCACGAAACAGTAAATTTGTAAATACTCTNTACATTNTATATCGTTAA 598
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      GCAAATAAGCATGAATAACTTATACTTTAGGAAACTAATTTGTGATGTGTGTTAGTACAG 836
consensus_9961#1      GCAAAT----------------------------------------GTGTGTTAGTACAG 618
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      AAATATTCTTGTCTACTAACTTCTATTCAAGAAAAAGTATATTTGTATAACATCTAAAGA 896
consensus_9961#1      AA-TATTCTTG-CTACTAACT-CTATTCAG--AAAAGTAT-TNTGTATA-CATCTAA-GA 670
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      TGTAACAAGCAGCGCCTTTTCTTGAATTTTCTCTTTCTGGGCTGCGGTTTAATCTTGAAG 956
consensus_9961#1      TGTA--CAGCAGCGCCTTT-CTTGAATTTCTC--TTCTGGGCTGCG-TTTAATCT--GAG 722
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      CTTTCATCACCTCTCTGTACAACATCTTCAGCATAAACTTGAGGTAGACTTAAGCTATTT 1016
consensus_9961#1      CTT-CATCACTTCTGTC----ACATCTCAGATA---ACTTGAG-TAGACT--AGCTATT- 770
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      GAAATCCTTCATACATAACTGACTTCTCTTATGGACTTTGATTTATGTTGTTTTTTCCTA 1076
consensus_9961#1      -GAATCTC--------AACT-ACTGATCCTATGA--CTTGATT-ATGTG----TTTTCTA 813
consensus_9961#2      ------------------------------------------------------------
                                                                                  

consensus_9961#0      TTGGAAAGCAATAAATATTCAGA 1099
consensus_9961#1      T--GAACATAAT----------- 823
consensus_9961#2      -----------------------