These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 900 fasta sequence [CGGTACCCAAACGTCCAACCGTTTCCATTTACAACTAAATCTTTATTTGTCGGACACACAGATTATAAAAATTTACGATGGCAAGTAATTGATACACCTGGTGTATTAAATAGACCTTTGGACGAACATAACACAATCGAAATGCTATCCATTACAGCACTTGCACATCTACAAGCTGCTGTAATATATATCATGGATTTGTCTGAACAATGTGGATATACTATACAACAGCAATTAACGTTATTCCAAAACTTGAAACCTCTTTTCCGTAACAAACCTCTTGTAATAGCCGCTAACAAAGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCAGATCGACCAATCTTTGTTGAAATGTCCACTGTTACTGAAGTTGGTTTAGTGACTGTTCGTTCAGTTGCATGTGACGACTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGTTGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTC-GTCCACCAATAATTCCCGACGGTG-TTCTAGATAAACAAAAGAAACGTATACTTAAACGTCTTCGTATTGCTAATTCACTACAACCTTACTCGCAACTTGAAGACGAAG-ATGACAACCCATCGAAACGTCGAACAATGCGTGATCGTGAACCAGATGCTGATCCTGATGAAGGCTTCATATTGAATTTAAGAGAGCATTGGCGTATAAAATGTCCTGAAGAGGCAAATGATATAGTCCCTGAGATTTTGAATGGACATAACCTGATCGACCTATTCGATCCTGAAATTGAGGAGAAGCTG] [+] EMBL CD129396 [CGGTACCCAAACGTCCAACCGTTTCCATTTACAACTAAATCTTTATTTGTCGGACACACAGATTATAAAAATTTACGATGGCAAGTAATTGATACACCTGGTGTATTAAATAGACCTTTGGACGAACATAACACAATCGAAATGCTATCCATTACAGCACTTGCACATCTACAAGCTGCTGTAATATATATCATGGATTTGTCTGAACAATGTGGATATACTATACAACAGCAATTAACGTTATTCCAAAACTTGAAACCTCTTTTCCGTAACAAACCTCTTGTAATAGCCGCTAACAAAGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCAGATCGACCAATCTTTGTTGAAATGTCCACTGTTACTGAAGTTGGTTTAGTGACTGTTCGTTCAGTTGCATGTGACGACTTGTTAGCTCA ] [+] EMBL CD161364 [ CGAACATAACACAATCGAAATGCTATCCATTACAGCACTTGCACATCTACAAGCTGCTGTAATATATATCATGGATTTGTCTGAACAATGTGGATATACTATACAACAGCAATTAACGTTATTCCAAAACTTGAAACCTCTTTTCCGTAACAAACCTCTTGTAATAGCCGCTAACAAAGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCAGATCGACCAATCTTTGTTGAAATGTCCACTGTTACTGAAGTTGGTTTAGTGACTGTTCGTTCAGTTGCATGTGACGACTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGTTGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTC GTCCACCAATAATTCCCGACGGTG TTCTAGATAAACAAAAGAAACGTATACTTAAACGTCTTCGTATTGCTAATTCACTACAACCTTACTCGCAACTTGAAGACGAAGAATGA ] [+] EMBL CD161306 [ CGAACATAACACAATCGAAATGCTATCCATTACAGCACTTGCACATCTACAAGCTGCTGTAATATATATCATGGATTTGTCTGAACAATGTGGATATACTATACAACAGCAATTAACGTTATTCCAAAACTTGAAACCTCTTTTCCGTAACAAACCTCTTGTAATAGCCGCTAACAAAGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCAGATCGACCAATCTTTGTTGAAATGTCCACTGTTACTGAAGTTGGTTTAGTGACTGTTCGTTCAGTTGCATGTGACGACTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGTTGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTC GTCCACCAATAATTCCCGACGGTG TTCTAGATAAACAAAAGAAACGTATACTTAAACGTCTTCGTATTGCTAATTCACTACAACCTTACTCGCAACTTGAAGACGAAG ATGAC ] [-] EMBL CD161314 [ GAACATAACACAATCGAAATGCTATCCATTACAGCACTTGCACATCTACAAGCTGCTGTAATATATATCATGGATTTGTCTGAACAATGTGGATATACTATACAACAGCAATTAACGTTATTCCAAAACTTGAAACCTCTTTTCCGTAACAAACCTCTTGTAATAGCCGCTAACAAAGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCAGATCGACCAATCTTTGTTGAAATGTCCACTGTTACTGAAGTTGGTTTAGTGACTGTTCGTTCAGTTGCATGTGACGACTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGTTGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTC GTCCACCAATAATTCCCGACGGTG TTCTAGATAAACAAAAGAAACGTATACTTAAACGTCTTCGTATTGCTAATTCACTACAACCTTACTCGCAACTTGAAGA ] [-] EMBL CD148617 [ TGCTATCCATTACAGCACTTGCACATCTACAAGCTGCTGTAATATATATCATGGATTTGTCTGAACAATGTGGATATACTATACAACAGCAATTAACGTTATTCCAAAACTTGAAACCTCTTTTCCGTAACAAACCTCTTGTAATAGCCGCTAACAAAGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCAGATCGACCAATC TTGTTGAGATGTCCACTGTTACTGAAGTTGGTTTAGTGACTGTTCGTTCAGTTGCATGTGACGCCTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGTTGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTC GTCCACCA ] [-] EMBL CD163522 [ GTTCGTTCAGTTGCATGTGACGACTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGTTGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTC GTCCACCAATAATTCCCGACGGTG TTCTAGATAAACAAAAGAAACGTATACTTAAACGTCTTCGTATTGCTAATTCACTACAACCTTACTCGCAACTTGAAGACGAAG ATGACAACCCATCGAAACGTCGAACAATGCGTGATCGTGAACCAGATGCTGATCCTGATGAAGGCTTCATATTGAATTTAAGAGAGCATTGGCGTATAAAATGTCCTGAAGAGGCAAATGATATAGTCCCTGAGATTTTGAATGGACATAACCTGATCGACCTATTCGAT ] [+] EMBL CD161477 [ GACGACTTGATAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGCAATGTTGATATTTATAATCGGCTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTCAGTCCACCAATAATTCCCGACGGTGATTCTTGATAAACAAAAGAAACGTATACCTAAACGTCTTCGTATTGCTAATTCACTACAACCTT ] [+] EMBL CD148942 [ CTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGTTGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGCACCATCTC GTCCACCAATAATTCCCGACGGTG TTCTAGATAAACAAAAGAAACGTATACTTAAACGTCTTCGTATTGCTAATTCACTACAACCTTACTCGCAACTTGAAGACGAAG ATGACAACCCATCGAAACGTCGAACAATGCGTGATCGTGAACCAGATGCTGATCCTGATGAAGGCTTCATATTGAATTTAAGAGAGCATTGGCGTATAAAATGTCCTGAAGAGGCAAATGATATAGTCCCTGAGATTTTGAATGGACATAACCTGATCGACCTATTCGATCCTGAAATTGAGGAGAAGCTG] consensusID : consensus_9963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 440 fasta sequence [GACCTATTCGATCCTGAAATTGAGGAGAAGCTGAATGCTTTAGAAGAACAAGAGACTGCTCTCGATAATGCTGGATTTTACGATGAATCTGAACTACTGAAGAAGGAAAATGACCCAGAAATGAAAAAAATCAAAGAAACCGCAGCAAAGATAAGAGAGGCACGAGCATTGCGTGTTTTGGAATCACGAGCTCGTAAGCAAGTACGTAGACCTCAAGTACCTCGAAGTGCTCGTTCAGTTAGTGTACATAAAATACATAAAGATCTTGGTGAGCTTGGTTTGGAGGTGGATATGCATGAACAGGGCGAACGTGGTCGGTCACTAAAGAGAGCTGCTAGAGCACGGAATTCAACACCAAATCTACACCGTGAAGCTTCAATTGCACGTGCATCTGTATCGCGATCTAGATCTGGTTTACGTGATGAAAAAATGCATGACAC] [+] EMBL CD116032 [GACCTATTCGATCCTGAAATTGAGGAGAAGCTGAATGCTTTAGAAGAACAAGAGACTGCTCTCGATAATGCTGGATTTTACGATGAATCTGAACTACTGAAGAAGGAAAATGACCCAGAAATGAAAAAAATCAAAGAAACCGCAGCAAAGATAAGAGAGGCACGAGCATTGCGTGTTTTGGAATCACGAGCTCGTAAGCAAGTACGTAGACCTCAAGTACCTCGAAGTGCTCGTTCAGTTAGTGTACATAAAATACATAAAGATCTTGGTGAGCTTGGTTTGGAGGTGGATATGCATGAACAGGGCGAACGTGGTCGGTCACTAAAGAGAGCTGCTAGAGCACGGAATTCAACACCAAATCTACACCGTGAAGCTTCAATTGCACGTGCATCTGTATCGCGATCTAGATCTGGTTTACGTGATGAAAAAATGCATGACAC] [+] EMBL CD116026 [GACCTATTCGATCCTGAAATTGAGGAGAAGCTGAATGCTTTAGAAGAACAAGAGACTGCTCTCGAAAATGCTGGATTTTACGATGAATCTGAACTACTGAAGAAGGAAAATGACCCAGAAATGAAAAAAATCAAAGAAACCGCAGCAAAGATAAGAGAGGCACGAGCATTGCGTGTTTTGGAATCACGAGCTCGTAAGCAAGTACGTAGACCTCAAGTACCTCGAAGTGCTCGTTCAGTTAGTGTACATAAAATACATAAAGATCTTGGTGAGCTTGGTTTGGAGGTGGATATGCATGAACAGGGCGAACGTGGTCGGTCACTAAAGAGAGCTGCTAGAGCACGGAATTCAACACCAAATCTACACCGTGAAGCTTCAATTGCACGTGCATCTGTATCGCGATCTAGATCTGGTTTACGTGATGAAAAAATGCATGACAC] consensusID : consensus_9963#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [ACCTCCAAACCAAGCTCACCATGATCTTTATGTATTTTATGTACACTAACTGAACGAGCACTTCGAGGTACTTGAGGTCTACGTACTTGCTTACGAGCTCGTGATTCCAAAACACGCAATGCTCTCTTTAGTGACCGACCACGTTCGCCCTGTTCATGCATATCCACCTCCAAACCAAGCTCACCAAGATCTTTATGTATTTTATGTACACTAACTGAACGAGCACTTCTAGGTACTTGAGGTCTACGTACTTGCTTACGAGCTCGTGAT] [+] EMBL CD196052 [ACCTCCAAACCAAGCTCACCATGATCTTTATGTATTTTATGTACACTAACTGAACGAGCACTTCGAGGTACTTGAGGTCTACGTACTTGCTTACGAGCTCGTGATTCCAAAACACGCAATGCTCTCTTTAGTGACCGACCACGTTCGCCCTGTTCATGCATATCCACCTCCAAACCAAGCTCACCAAGATCTTTATGTATTTTATGTACACTAACTGAACGAGCACTTCTAGGTACTTGAGGTCTACGTACTTGCTTACGAGCTCGTGAT] consensusID : consensus_9963#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [GTTTTATTCATTAAATTAAAAACAATTCAAAGAATCGTAAAAATCTAAATATCTTCCAATTCACCCTTTCCAGGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCA] [+] EMBL AI014207 [GTTTTATTCATTAAATTAAAAACAATTCAAAGAATCGTAAAAATCTAAATATCTTCCAATTCACCCTTTCCAGGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATAGTATTGTCCAGTGGCATACTGATAAACAGGTCAGAGATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9963#0 CGGTACCCAAACGTCCAACCGTTTCCATTTACAACTAAATCTTTATTTGTCGGACACACA 60 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 ------------------------------------------------------------ consensus_9963#0 GATTATAAAAATTTACGATGGCAAGTAATTGATACACCTGGTGTATTAAATAGACCTTTG 120 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 ----------------------------------------------------GACCTATT 8 consensus_9963#0 GACGAACATAACACAATCGAAATGCTATCCATTACAGCACTTGCACAT--CTACAAGCTG 178 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ---------------ACCTCCAAACCAAGCTCACCATGATCTTTATGT--ATTTTATGTA 43 consensus_9963#1 CGATCCTGAAATTGAGGAGAAGCTGAATGCTTTAGAAGAACAAGAGACTGCTCTCGATAA 68 consensus_9963#0 CTGTAATATATATCATGGATTTGTCTGAACAATGTGGATATACTATACAACAGCAATTAA 238 consensus_9963#3 ---------------------------------------GTTTTATTCATTAA-ATTAAA 20 consensus_9963#2 CACTAACTGAACGAGCACTTCGAGGTACTTGAGGTCTACGTACTTGCTTACGA----GCT 99 consensus_9963#1 TGCTGGATTTTACGATGAATCTGAACTACTGAAGAAGGAAAATGACCCAGAAATGAAAAA 128 consensus_9963#0 CGTTATTCCAAAACTTGAAACCTCTTTTCCGTAACAAACCTCTTGTAATAGCCGCTAACA 298 consensus_9963#3 AACAATTCAAAGAATCGTAAAAATCT---------AAATATCTTCCAATTCACCCTTTCC 71 consensus_9963#2 CGTGATTCCAAAACACGCAATGCTCT----------CTTTAGTGACCGACCACGTTCGCC 149 consensus_9963#1 AATCAAAGAAACCGCAGCAAAGATAAGAGAGGCACGAGCATTGCGTGTTTTGGAATCAC- 187 * ** * ** * * consensus_9963#0 AAGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATA-GT 357 consensus_9963#3 AGGTTGATATTAAACCATTTGAAGAACTATCTGAAGAAGATAAACAATCAATTAATA-GT 130 consensus_9963#2 CTGTTCATGCATATCCACCTCCAAACCAAGCTCACCAAGATCTTTATGTATTTTATGTAC 209 consensus_9963#1 GAGCTCGTAAGCAAGTACGTAGACCTCAAGTACCTCGAAGTGCTCGTTCAGTTAGTGTAC 247 * * * * * * * * * * * * ** * consensus_9963#0 ATTG--TCCAGTGGCATACTGATAAAC--AGGTCAGAGATCCAGATCGACCAATCTTTGT 413 consensus_9963#3 ATTG--TCCAGTGGCATACTGATAAAC--AGGTCAGAGATCCA----------------- 169 consensus_9963#2 ACTA--ACTGAACGAGCACTTCTAGGT--ACTTGAGGTCTACGTACTTGCTTACGAGCTC 265 consensus_9963#1 ATAAAATACATAAAGATCTTGGTGAGCTTGGTTTGGAGGTGGATATGCATGAACAGGGCG 307 * * * * * * consensus_9963#0 TGAAATGTCCACTGTTACTGAAGTTGGTTTAGTGACTGTTCGTTCAGTTGCATGTGACGA 473 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 GTGAT------------------------------------------------------- 270 consensus_9963#1 AACGTGGTCGGTCACTAAAGAGAGCTGCTAGAGCACGGA--ATTCAACACCAAATCTACA 365 consensus_9963#0 CTTGTTAGCTCAACGTGTACAAGCGAAAATTCGAGCTGCTACTCTGCCAGGCGGTAATGT 533 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 CCGTGAAGCTTCAATTGCACGTGCATCTGTATCGCGATCTAGATCTGGTTTACGTGATGA 425 consensus_9963#0 TGATATTTCTAATCGGTTGTATATAGCTAAACCGAAACCAGACGAAAATAAGACAGATGC 593 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 AAAAATGCATGACAC--------------------------------------------- 440 consensus_9963#0 ACCATCTCGTCCACCAATAATTCCCGACGGTGTTCTAGATAAACAAAAGAAACGTATACT 653 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 ------------------------------------------------------------ consensus_9963#0 TAAACGTCTTCGTATTGCTAATTCACTACAACCTTACTCGCAACTTGAAGACGAAGATGA 713 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 ------------------------------------------------------------ consensus_9963#0 CAACCCATCGAAACGTCGAACAATGCGTGATCGTGAACCAGATGCTGATCCTGATGAAGG 773 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 ------------------------------------------------------------ consensus_9963#0 CTTCATATTGAATTTAAGAGAGCATTGGCGTATAAAATGTCCTGAAGAGGCAAATGATAT 833 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 ------------------------------------------------------------ consensus_9963#0 AGTCCCTGAGATTTTGAATGGACATAACCTGATCGACCTATTCGATCCTGAAATTGAGGA 893 consensus_9963#3 ------------------------------------------------------------ consensus_9963#2 ------------------------------------------------------------ consensus_9963#1 ------------------------------------------------------------ consensus_9963#0 GAAGCTG 900 consensus_9963#3 ------- consensus_9963#2 ------- consensus_9963#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||