cluster # 9967

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Schistosoma mansoni
cluster # 9967 cluster # 9967 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9967#0 length = 480 sequences # 10

consensus_9967#1 length = 164 sequences # 2

consensusID : consensus_9967#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 480
fasta sequence

                              [CAAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACTAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC-AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA-TC-AAATATCGGACCTCTTCTTCCGTTTCGTAAG]

[+] EMBL CD200980             [ AAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACTAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA TC GAATATCGGACCTCTTCTTCCGTTTCGTAAG]
[+] EMBL CD200891             [ AAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACCAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGCTGTGTTGTTGACTGAAAGAGGGG                                                                                             ]
[+] EMBL CD071616             [ AAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACCAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA TC AAATATCGGACCTCTTCCTCCGTTT      ]
[+] EMBL CD201016             [ AAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACCAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA TC AAATATCGGACCTCTTCTTCCGTTT      ]
[+] EMBL CD200627             [ AAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACTAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA TC AAATATCGGACCTCTTCTTCCGTTT      ]
[-] EMBL CD071637             [  AGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACTAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA TC AAATATCGGACCTCTTCTTCCGTTTC     ]
[+] EMBL CD200873             [ccatCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTACACTGTAAACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGGTCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAACTAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTACATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGAAGGTTGGCAAGGTTTCCATCAAAAAAAAAGTATCTTACAGTTTGGTTAACTCAAAATATCGGACCTCTTCTTCCGTTT      ]
[-] EMBL CD112310             [                           CCTGTGTGGGGGCTTCAGTTTCCATAACAACCACACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATACATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAGCCAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCGTGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA TC AAATATCGGACCTCTTCTTCCGTTTC     ]
[-] EMBL CD071709             [                                                                                                                                                                                                                                                                                   TCGATACTGCGTTTCGCTTGTTCGGGATTGATAACTGGAACATNTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACGGTTTGGTTAA TC AAATATCGGACCTCTTCTTCCGTTTC     ]
[-] EMBL CD071702             [                                                                                                                                                                                                                                                                                                                            tTTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTC AGGTTTCCAGCAGACAAAAAGTATCTTACAGTTTGGTTAA TC AAATATCGGACCTCTTCTTCCGTTTC     ]




>consensus_9967#0
CAAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTA
CACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATA
CATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAA
CTAAAACTTCTTCTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGCG
TGAAAATAACCACTTGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTCGG
GATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGATA
CAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTCAGGTTTCCAGCAG
ACAAAAAGTATCTTACAGTTTGGTTAATCAAATATCGGACCTCTTCTTCCGTTTCGTAAG

consensusID : consensus_9967#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 164
fasta sequence

                              [CACCTGCACAAGAGGCTGGGCTTACTTACGAAACGGAAGAAGAGGTCCGATATTTGGTTAACCAAACTTCAACAACACAACAACTGTATCTACGACTTCAACGACTACCTCTGTTTCCACTGGTTCAAATGTTCCAGTTATCAATCCCGAACAAGCGAAACGCA]

[+] EMBL CD095023             [CACCTGCACAAGAGGCTGGGCTTACTTACGAAACGGAAGAAGAGGTCCGATATTTGGTTAACCAAACTTCAACAACACAACAACTGTATCTACGACTTCAACGACTACCTCTGTTTCCACTGGTTCAAATGTTCCAGTTATCAATCCCGAACAAGCGAAACGCA]
[+] EMBL CD071683             [                             GAAACGGAAGAAGAGGTCCGATATTTGATTAACCAAACTTCAACAACACAACAACTGTATCTACGACTTCAACGACTACCTCTGTTTCCACTGGTTCAAATGGTCCAGTTATCA                     ]




>consensus_9967#1
CACCTGCACAAGAGGCTGGGCTTACTTACGAAACGGAAGAAGAGGTCCGATATTTGGTTA
ACCAAACTTCAACAACACAACAACTGTATCTACGACTTCAACGACTACCTCTGTTTCCAC
TGGTTCAAATGTTCCAGTTATCAATCCCGAACAAGCGAAACGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9967#0      CAAGCATACCTTTTGCCGTTTGCAAAGCCTGTGTGGGGGCTTCAGTTTCCATAACAACTA 60
consensus_9967#1      ------------------------------------------------------------
                                                                                  

consensus_9967#0      CACTGTAGACAGAAGCGCAAGCGTGACGACAACTCGCTCCTCTAGGGGTCGCCAACAATA 120
consensus_9967#1      ------------------------------------------------------------
                                                                                  

consensus_9967#0      CATTATTCATACGATCAAAAAGTTGCTTGTTACAAGTAATCAATTCTTTAGTATTGCCAA 180
consensus_9967#1      ---------------------------------------------CACCTGCACAAGAGG 15
                                                                   *    * *       

consensus_9967#0      CTAAAACTTCTT-CTAAATAATTTGGGAAATCTGGAGAATCTTTGGTGTGCTGAGATCGC 239
consensus_9967#1      CTGGGCTTACTTACGAAACGGAAGAAGAGGTCCG----ATATTTGGT-TAACCAAACTTC 70
                      **     * *** * ***        **  ** *    ** ****** *    * *   *

consensus_9967#0      GTGAAAATAACCACT-TGGATAAGACGAAAATAAGTGTCGATACTGCGTTTCGCTTGTTC 298
consensus_9967#1      AACAACACAACAACTGTATCTACGACTTCAACGACTACCTCTGTT----TCCACTGGTTC 126
                         ** * *** *** *   ** ***   **  * *  *  *  *    * * ** ****

consensus_9967#0      GGGATTGATAACTGGAACATTTGAACCAGTGGAAACAGAGGTAGTCGTTGAAGTCGTAGA 358
consensus_9967#1      AAATGTTCCAGTTATCAATCCCGAACAAGCG-AAACGCA--------------------- 164
                           *   *  *   *     **** ** * ****  *                     

consensus_9967#0      TACAGTTGTTGTGTTGTTGACTGAAAGAGGGGTTTGAGAGACGGTTGTCAGGTTTCCAGC 418
consensus_9967#1      ------------------------------------------------------------
                                                                                  

consensus_9967#0      AGACAAAAAGTATCTTACAGTTTGGTTAATCAAATATCGGACCTCTTCTTCCGTTTCGTA 478
consensus_9967#1      ------------------------------------------------------------
                                                                                  

consensus_9967#0      AG 480
consensus_9967#1      --