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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1004 fasta sequence
[TATATAATATGGGTCCGGACAATGCCACGGTTATGCCGCTAGAAGAAATGTCTCCACATACAGHHHGAGATAVACGAGTGTCAAACAACTAGAGGTCCAAGTTGTTATATAGGAAGGAAAAATAAAGAGAGAATGACAAAATTATTGACAAGAATAGTACAGTAGTTAGTAAAACTACTATATATATATATATATATATATCAGGTTTACATCTGATCTTGGAACAATGTTTCAAATAAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAATTGAAACAACG-TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC-TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA-TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAG-AACGTACTTCAAGTGAAGTTGAGAAATAATTAGATACATCTTCTACATCAAGTCCACTGTTATGTGATTCATTATCTATTTCCTTGTTTTGTTGTTGCAATGAATCAGTGTTGCATGGTGTACCAACATCATCAGCTTTTCCAG]
[-] EMBL AI639559 [TATATAATATGGGTCCGGACAATGCCACGGTTATGCCGCTAGAAGAAATGTCTCCACATACAGHHHGAGATAVACGAGTGTCAAACAACTAGAGGTCCAAGTTGTTATATAGGAAGGAAAAATAAAGAGAGAATGACAAAATTATTGACAAGAATAGTACAGTAGTTAGTAAAACTACTATATATATATATATATATATATCAGGTTTACATCTGATCTTGGAACAATGTTTCAAATAAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAACTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCAgct ]
[+] EMBL CD201323 [ AATGTTTCAAATAAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAATTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAGCTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGT ]
[+] EMBL CD149258 [ GATATGTTGGATTATATAAAAGCAAAGAATAAATTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAGACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAGAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATCGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACG ]
[+] EMBL CD143376 [ AGCAAAGAATAAATTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACACTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGT ]
[-] EMBL CD143363 [ GCAAAGAATAAATTGAANC ACGTTCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTG TGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACACTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTA ]
[+] EMBL CD121861 [ ATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATCTTTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATCAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGCGATAGTTTCACTCACTGT ]
[-] EMBL CD084100 [ GAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATATTTGATGGGTGATAGTTTCACTCACTGTACGTTGCcc ]
[-] EMBL CD188243 [ TAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCTCATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAG AACGTACTTCAAGTGAAGTTGAGAAATAATTAGA ]
[-] EMBL CD117269 [ AAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAG AACGTACTTCAAGTGAAGTTGAGAAATAATTAGATACATCTTCTACATCAAGTCCACTGTTATGTGATTCATTATCTATTTCCTTGTTTTGTTGTTGCAATGAATCAGTGTTGCATGGTGTACCAACATCATCAGCTTTTCCAG]
[+] EMBL CD072647 [ AAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAGAAACGTACTTC AGTGAAGTTGAGAAATAATTAGATACAT ]
consensusID : consensus_9970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[TGCATCGTTACGGCACCATCATCTGTCAACATCATCATCATCATTCTCACTATTATGGACATCCATCTAATACACTCATACTGTATATCACGTTTTGAATCCAGCCCATATAATGCCTGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTACCTATGGCAGTACCTGCTGGACTACCACCTAGTAAGGGTGGCTATACTTATTTGCAGCCACAAAGCTCGTGGAACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAAACGTCAACAACAACAGCAACAAGAGCAACCAATGAGTAATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGAAAAGCTGATGATGTTGGTACACCATGCAACACTGAACCACCTATAGGCTTTCATTTTATTACTCTTATCTTAATTCA]
[+] EMBL CD152170 [TGCATCGTTACGGCACCATCATCTGTCAACATCATCATCATCATTCTCACTATTATGGACATCCATCTAATACACTCATACTGTATATCACGTTTTGAATCCAGCCCATATAATGCCTGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTACCTATGGCAGTACCTGCTGGACTACCACCTAGTAAGGGTGGCTATACTTATTTGCAGCCACAAAGCTCGTGGAACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAAACGTCAACAACAACAGCAACAAGAGCAACCAATGAGTAATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGAAAAGCTGATGATGTTGGTACACCATGCAACACTGAACCACCTATAGGCTTTCATTTTATTACTCTTATCTTAATTCA]
consensusID : consensus_9970#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[TTCGTTACACCACCATCATCGCCAACATCATCATCATTCTCACTATTATGGACATCCATCTAATACATCATCTGTTTATCAGTTTTTGGATCCACCCCATATAATGCCGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTAGCTATGGCAGTAGCTGCTGGACTACCACCTAGTAAGGCTGCTATACTAGCTTATGCAGCACAAGCTCTTGGACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAACGTCAACAACAACAACAGCAACAAGAGCAACCAATGAGTGATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGANAAGCTGATGATGTTGGTACACCATGCAACACTG]
[+] EMBL AI976089 [TTCGTTACACCACCATCATCGCCAACATCATCATCATTCTCACTATTATGGACATCCATCTAATACATCATCTGTTTATCAGTTTTTGGATCCACCCCATATAATGCCGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTAGCTATGGCAGTAGCTGCTGGACTACCACCTAGTAAGGCTGCTATACTAGCTTATGCAGCACAAGCTCTTGGACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAACGTCAACAACAACAACAGCAACAAGAGCAACCAATGAGTGATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGANAAGCTGATGATGTTGGTACACCATGCAACACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9970#1 ------------------------------------------------------------
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 TATATAATATGGGTCCGGACAATGCCACGGTTATGCCGCTAGAAGAAATGTCTCCACATA 60
consensus_9970#1 ------------------------------------------------------------
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 CAGHHHGAGATAVACGAGTGTCAAACAACTAGAGGTCCAAGTTGTTATATAGGAAGGAAA 120
consensus_9970#1 ------TGCATCGTTACGGCACCATCATCTGTCAACATCATCATCATCATTCTCACTATT 54
consensus_9970#2 ---------TTCGTTACACCACCATCATC-GCCAACATCATCATCAT---TCTCACTATT 47
consensus_9970#0 AATAAAGAGAGAATGACAAAATTATTGAC-AAGAATAGTACAGTAGTTAGTAAAACTACT 179
* ** * ** * ** * * * * * **** *
consensus_9970#1 ATGGACATCCATCTA-ATACACTCATACTGTATATCACGTTTTGAATCCAG--CCCATAT 111
consensus_9970#2 ATGGACATCCATCTA-ATACA-TCAT-CTGTTTATCAGTTTTTGGATCCAC--CCCATAT 102
consensus_9970#0 ATATATATATATATATATATA-TCAGGTT-TACATCTGATCTTGGAACAATGTTTCAAAT 237
** * ** ** ** *** * *** * * *** * *** * * * ** **
consensus_9970#1 AATGCCTGATAGAAACT---TCTGATCATTCACATTATACTGACCCTTTACCTATGGCAG 168
consensus_9970#2 AATGCC-GATAGAAACT---TCTGATCATTCACATTATACTGACCCTTTAGCTATGGCAG 158
consensus_9970#0 AAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAATTGAAACAA 297
** ** *** * * ** * * * ** * * * * * * **
consensus_9970#1 TACCTGC---TGGACTACCACCTAGTAAGGGTGGCTATACTTATTTGCAGCCACA-AAGC 224
consensus_9970#2 TAGCTGC---TGGACTACCACCTAGTAAGGCTG-CTATACTAGCTTAT-GCAGCACAAGC 213
consensus_9970#0 CGTCTTTATATGCATATATATATGAGAAAGTTTACGAGGCT-GTTTGT-TTCATATGATG 355
** ** * * * ** * * * * ** ** * *
consensus_9970#1 TCGTGGAACCAGATAC---TGTTTGGGCTGGTT-TAGCTGCAGCAAAAAAAA--CGTCAA 278
consensus_9970#2 TCTTGGA-CCAGATAC---TGTTTGGGCTGGTT-TAGCTGCAGCAAAAAAACGTCAACAA 268
consensus_9970#0 TATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGA 415
* * *** ** **** ** * * ** * ***** *
consensus_9970#1 CAACAACAGCAACAAGAGCA-----ACCAATGAGTAATACAGAAGAGACAACTTCCAATT 333
consensus_9970#2 CAACAACAGCAACAAGAGCA-----ACCAATGAGTGATACAGAAGAGACAACTTCCAATT 323
consensus_9970#0 CATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATT 475
** * ** ** * ** ** *** ** * * * ***** ****
consensus_9970#1 CACTCACAA----ATAACGATCATG-TCATATTAACTACCTCAACTGGAAAAGCTGATGA 388
consensus_9970#2 CACTCACAA----ATAACGATCATG-TCATATTAACTACCTCAACTGGANAAGCTGATGA 378
consensus_9970#0 TATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACT 535
* * * * ** * * * ** * *** *** * * * * *** ***
consensus_9970#1 TGTTGGTACACCATGCAACACTGAACCACCTATAGGCTTTCATTTTATTACTCTTATCTT 448
consensus_9970#2 TGTTGGTACACCATGCAACACTG------------------------------------- 401
consensus_9970#0 AATTTGAAAATCTTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTT 595
** * * * * * *
consensus_9970#1 AATTCA------------------------------------------------------ 454
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 TATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGG 655
consensus_9970#1 ------------------------------------------------------------
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 TTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTA 715
consensus_9970#1 ------------------------------------------------------------
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 AGTGTTTCTGTCGGTTCAGTATATTGATGGGTGATAGTTTCACTCACTGTACGTTGCAAT 775
consensus_9970#1 ------------------------------------------------------------
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 TCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATA 835
consensus_9970#1 ------------------------------------------------------------
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 TCCTCGGTTGTAGAACTTGTAGCAGAACGTACTTCAAGTGAAGTTGAGAAATAATTAGAT 895
consensus_9970#1 ------------------------------------------------------------
consensus_9970#2 ------------------------------------------------------------
consensus_9970#0 ACATCTTCTACATCAAGTCCACTGTTATGTGATTCATTATCTATTTCCTTGTTTTGTTGT 955
consensus_9970#1 -------------------------------------------------
consensus_9970#2 -------------------------------------------------
consensus_9970#0 TGCAATGAATCAGTGTTGCATGGTGTACCAACATCATCAGCTTTTCCAG 1004
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||