These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1004 fasta sequence [TATATAATATGGGTCCGGACAATGCCACGGTTATGCCGCTAGAAGAAATGTCTCCACATACAGHHHGAGATAVACGAGTGTCAAACAACTAGAGGTCCAAGTTGTTATATAGGAAGGAAAAATAAAGAGAGAATGACAAAATTATTGACAAGAATAGTACAGTAGTTAGTAAAACTACTATATATATATATATATATATATCAGGTTTACATCTGATCTTGGAACAATGTTTCAAATAAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAATTGAAACAACG-TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC-TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA-TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAG-AACGTACTTCAAGTGAAGTTGAGAAATAATTAGATACATCTTCTACATCAAGTCCACTGTTATGTGATTCATTATCTATTTCCTTGTTTTGTTGTTGCAATGAATCAGTGTTGCATGGTGTACCAACATCATCAGCTTTTCCAG] [-] EMBL AI639559 [TATATAATATGGGTCCGGACAATGCCACGGTTATGCCGCTAGAAGAAATGTCTCCACATACAGHHHGAGATAVACGAGTGTCAAACAACTAGAGGTCCAAGTTGTTATATAGGAAGGAAAAATAAAGAGAGAATGACAAAATTATTGACAAGAATAGTACAGTAGTTAGTAAAACTACTATATATATATATATATATATATCAGGTTTACATCTGATCTTGGAACAATGTTTCAAATAAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAACTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCAgct ] [+] EMBL CD201323 [ AATGTTTCAAATAAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAATTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAGCTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGT ] [+] EMBL CD149258 [ GATATGTTGGATTATATAAAAGCAAAGAATAAATTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAGACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAGAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATCGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACG ] [+] EMBL CD143376 [ AGCAAAGAATAAATTGAAACAACG TCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACACTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGT ] [-] EMBL CD143363 [ GCAAAGAATAAATTGAANC ACGTTCTTTATATGCATATATATATGAGAAAGTTTACGAGGCTGTTTGTTTCATATGATGTATAAAAACCAACCACATGTG TGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACACTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTA ] [+] EMBL CD121861 [ ATATGATGTATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATCTTTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATCAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGCGATAGTTTCACTCACTGT ] [-] EMBL CD084100 [ GAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGACATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATTTATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATATTTGATGGGTGATAGTTTCACTCACTGTACGTTGCcc ] [-] EMBL CD188243 [ TAGACATCATTAAATAAGATGAACTAATTTGAAAATC TTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTTTATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGGTTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCTCATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAG AACGTACTTCAAGTGAAGTTGAGAAATAATTAGA ] [-] EMBL CD117269 [ AAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAG AACGTACTTCAAGTGAAGTTGAGAAATAATTAGATACATCTTCTACATCAAGTCCACTGTTATGTGATTCATTATCTATTTCCTTGTTTTGTTGTTGCAATGAATCAGTGTTGCATGGTGTACCAACATCATCAGCTTTTCCAG] [+] EMBL CD072647 [ AAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTAAGTGTTTCTGTCGGTTCAGTATA TTGATGGGTGATAGTTTCACTCACTGTACGTTGCAATTCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATATCCTCGGTTGTAGAACTTGTAGCAGAAACGTACTTC AGTGAAGTTGAGAAATAATTAGATACAT ] consensusID : consensus_9970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TGCATCGTTACGGCACCATCATCTGTCAACATCATCATCATCATTCTCACTATTATGGACATCCATCTAATACACTCATACTGTATATCACGTTTTGAATCCAGCCCATATAATGCCTGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTACCTATGGCAGTACCTGCTGGACTACCACCTAGTAAGGGTGGCTATACTTATTTGCAGCCACAAAGCTCGTGGAACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAAACGTCAACAACAACAGCAACAAGAGCAACCAATGAGTAATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGAAAAGCTGATGATGTTGGTACACCATGCAACACTGAACCACCTATAGGCTTTCATTTTATTACTCTTATCTTAATTCA] [+] EMBL CD152170 [TGCATCGTTACGGCACCATCATCTGTCAACATCATCATCATCATTCTCACTATTATGGACATCCATCTAATACACTCATACTGTATATCACGTTTTGAATCCAGCCCATATAATGCCTGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTACCTATGGCAGTACCTGCTGGACTACCACCTAGTAAGGGTGGCTATACTTATTTGCAGCCACAAAGCTCGTGGAACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAAACGTCAACAACAACAGCAACAAGAGCAACCAATGAGTAATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGAAAAGCTGATGATGTTGGTACACCATGCAACACTGAACCACCTATAGGCTTTCATTTTATTACTCTTATCTTAATTCA] consensusID : consensus_9970#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [TTCGTTACACCACCATCATCGCCAACATCATCATCATTCTCACTATTATGGACATCCATCTAATACATCATCTGTTTATCAGTTTTTGGATCCACCCCATATAATGCCGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTAGCTATGGCAGTAGCTGCTGGACTACCACCTAGTAAGGCTGCTATACTAGCTTATGCAGCACAAGCTCTTGGACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAACGTCAACAACAACAACAGCAACAAGAGCAACCAATGAGTGATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGANAAGCTGATGATGTTGGTACACCATGCAACACTG] [+] EMBL AI976089 [TTCGTTACACCACCATCATCGCCAACATCATCATCATTCTCACTATTATGGACATCCATCTAATACATCATCTGTTTATCAGTTTTTGGATCCACCCCATATAATGCCGATAGAAACTTCTGATCATTCACATTATACTGACCCTTTAGCTATGGCAGTAGCTGCTGGACTACCACCTAGTAAGGCTGCTATACTAGCTTATGCAGCACAAGCTCTTGGACCAGATACTGTTTGGGCTGGTTTAGCTGCAGCAAAAAAACGTCAACAACAACAACAGCAACAAGAGCAACCAATGAGTGATACAGAAGAGACAACTTCCAATTCACTCACAAATAACGATCATGTCATATTAACTACCTCAACTGGANAAGCTGATGATGTTGGTACACCATGCAACACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9970#1 ------------------------------------------------------------ consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 TATATAATATGGGTCCGGACAATGCCACGGTTATGCCGCTAGAAGAAATGTCTCCACATA 60 consensus_9970#1 ------------------------------------------------------------ consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 CAGHHHGAGATAVACGAGTGTCAAACAACTAGAGGTCCAAGTTGTTATATAGGAAGGAAA 120 consensus_9970#1 ------TGCATCGTTACGGCACCATCATCTGTCAACATCATCATCATCATTCTCACTATT 54 consensus_9970#2 ---------TTCGTTACACCACCATCATC-GCCAACATCATCATCAT---TCTCACTATT 47 consensus_9970#0 AATAAAGAGAGAATGACAAAATTATTGAC-AAGAATAGTACAGTAGTTAGTAAAACTACT 179 * ** * ** * ** * * * * * **** * consensus_9970#1 ATGGACATCCATCTA-ATACACTCATACTGTATATCACGTTTTGAATCCAG--CCCATAT 111 consensus_9970#2 ATGGACATCCATCTA-ATACA-TCAT-CTGTTTATCAGTTTTTGGATCCAC--CCCATAT 102 consensus_9970#0 ATATATATATATATATATATA-TCAGGTT-TACATCTGATCTTGGAACAATGTTTCAAAT 237 ** * ** ** ** *** * *** * * *** * *** * * * ** ** consensus_9970#1 AATGCCTGATAGAAACT---TCTGATCATTCACATTATACTGACCCTTTACCTATGGCAG 168 consensus_9970#2 AATGCC-GATAGAAACT---TCTGATCATTCACATTATACTGACCCTTTAGCTATGGCAG 158 consensus_9970#0 AAATTGTGAGAGAGGGTAGATATGTTGGATTAGATAAAAGCAAAGAATAAATTGAAACAA 297 ** ** *** * * ** * * * ** * * * * * * ** consensus_9970#1 TACCTGC---TGGACTACCACCTAGTAAGGGTGGCTATACTTATTTGCAGCCACA-AAGC 224 consensus_9970#2 TAGCTGC---TGGACTACCACCTAGTAAGGCTG-CTATACTAGCTTAT-GCAGCACAAGC 213 consensus_9970#0 CGTCTTTATATGCATATATATATGAGAAAGTTTACGAGGCT-GTTTGT-TTCATATGATG 355 ** ** * * * ** * * * * ** ** * * consensus_9970#1 TCGTGGAACCAGATAC---TGTTTGGGCTGGTT-TAGCTGCAGCAAAAAAAA--CGTCAA 278 consensus_9970#2 TCTTGGA-CCAGATAC---TGTTTGGGCTGGTT-TAGCTGCAGCAAAAAAACGTCAACAA 268 consensus_9970#0 TATAAAAACCAACCACATGTGTTGAGGGAAATGATGAATGTAAACTAAAAACAAAAAAGA 415 * * *** ** **** ** * * ** * ***** * consensus_9970#1 CAACAACAGCAACAAGAGCA-----ACCAATGAGTAATACAGAAGAGACAACTTCCAATT 333 consensus_9970#2 CAACAACAGCAACAAGAGCA-----ACCAATGAGTGATACAGAAGAGACAACTTCCAATT 323 consensus_9970#0 CATAATTGACAGAAAAACCACCATTACTAATCGGTGAATGTGTTCATTAAACTTTTAATT 475 ** * ** ** * ** ** *** ** * * * ***** **** consensus_9970#1 CACTCACAA----ATAACGATCATG-TCATATTAACTACCTCAACTGGAAAAGCTGATGA 388 consensus_9970#2 CACTCACAA----ATAACGATCATG-TCATATTAACTACCTCAACTGGANAAGCTGATGA 378 consensus_9970#0 TATTGATATTAATATGATGTTGATAATAATAATAATAGACATCATTAAATAAGATGAACT 535 * * * * ** * * * ** * *** *** * * * * *** *** consensus_9970#1 TGTTGGTACACCATGCAACACTGAACCACCTATAGGCTTTCATTTTATTACTCTTATCTT 448 consensus_9970#2 TGTTGGTACACCATGCAACACTG------------------------------------- 401 consensus_9970#0 AATTTGAAAATCTTTTTTTCTTCTAATAAGAACATTCAAATTACAAACGGCATTTTGTTT 595 ** * * * * * * consensus_9970#1 AATTCA------------------------------------------------------ 454 consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 TATGAGATAGTAGTGAATGTGAATTAAGATAAGAGTAATAAAATGAAAGCCTATAGGTGG 655 consensus_9970#1 ------------------------------------------------------------ consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 TTCCCACAAAACAGGAGATAGAGATCAGATAAATTGGAATTTGAAAACTAAGCTTCTGTA 715 consensus_9970#1 ------------------------------------------------------------ consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 AGTGTTTCTGTCGGTTCAGTATATTGATGGGTGATAGTTTCACTCACTGTACGTTGCAAT 775 consensus_9970#1 ------------------------------------------------------------ consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 TCAGAATCAAAATTCCTTATATCTGATATATTATTCACATAATCGGGAGTATTAGATATA 835 consensus_9970#1 ------------------------------------------------------------ consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 TCCTCGGTTGTAGAACTTGTAGCAGAACGTACTTCAAGTGAAGTTGAGAAATAATTAGAT 895 consensus_9970#1 ------------------------------------------------------------ consensus_9970#2 ------------------------------------------------------------ consensus_9970#0 ACATCTTCTACATCAAGTCCACTGTTATGTGATTCATTATCTATTTCCTTGTTTTGTTGT 955 consensus_9970#1 ------------------------------------------------- consensus_9970#2 ------------------------------------------------- consensus_9970#0 TGCAATGAATCAGTGTTGCATGGTGTACCAACATCATCAGCTTTTCCAG 1004 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||