cluster # 9973

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Schistosoma mansoni
cluster # 9973 cluster # 9973 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9973#0 length = 691 sequences # 8

consensus_9973#1 length = 489 sequences # 4

consensusID : consensus_9973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 691
fasta sequence

                              [TTAAATGACCAAATTCTAAATGAATATGAGGCTTCTTATATTTATGACCATATGGTGTCTTACCTATCCAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTCAGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTT-AAAAAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATAAGATATTACTTCAAGTGATTTGTTAATTTGAA]

[+] EMBL CD139081             [TTAAATGACCAAATTCTAAATGAATATGAGGCTTCTTATATTTATGACCATATGGTGTCTTACCTATCCAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTCAGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTT AAAAAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCA                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD140642             [                                                                                                                                                                                        TCCTGAAAAATATTTTAAAAAAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGAT                                                                  ]
[-] EMBL CD140632             [                                                                                                                                                                                                            AAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATA                                ]
[-] EMBL CD140500             [                                                                                                                                                                                                                       CAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATA                                ]
[+] EMBL CD192682             [                                                                                                                                                                                                                                                                                                                              GCGCTGCATAAATCAGCATTGAAAATGAATGATGCAACTACACAAGATACTTTGGACGATTTTCTAAAAGAACAAATGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGAGGTGTCTATCTGATGGATAAAGAATTTAGGTGAACTGGTAATCTTTTTGCAACGATAAGACTATGTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTATTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGT                                                                ]
[+] EMBL CD191987             [                                                                                                                                                                                                                                                                                                                              GCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAA                                                                             ]
[-] EMBL AI976029             [                                                                                                                                                                                                                                                                                                                                             GCATCGATAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAGCAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCGTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATAAGATATTACTTCAAGTGATTTGTTAATTTGAA]
[+] EMBL CD192341             [                                                                                                                                                                                                                                                                                                                                             GCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTT                                                                               ]




>consensus_9973#0
TTAAATGACCAAATTCTAAATGAATATGAGGCTTCTTATATTTATGACCATATGGTGTCT
TACCTATCCAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCA
AACGAAGAATTGGAGCATGCCCGTAAATTCAGTGAATTTGTCAATAAACGAAACTCAAAG
GTTGTCCTGAAAAATATTTTAAAAAAGATCGTATCAATGAACTTGCATCTTCAGGTGTAC
CAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAG
TCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACAC
AAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAA
TGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTT
GAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAAT
TATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGT
TACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATAA
GATATTACTTCAAGTGATTTGTTAATTTGAA

consensusID : consensus_9973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 489
fasta sequence

                              [GTTTAACTTTACAGTTAGTTAACATTACTACAATTTATACAAGCGATTGTTCGAAGAAATTTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTTGCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG-ATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAA-GAATTGGAGCATGCCCGTAAATTCAGT-GAATTT-GTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAA]

[+] EMBL CD083823             [GTTTAACTTTACAGTTAGTTAACATTACTACAATTTATACAAGCGATTGTTCGAAGAAATTTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTTGCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG ATAACC ATTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAA GAATTGGAGCATGCCCGTAAATTCAGT GAATTT GTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAA]
[+] EMBL SM777                [                                                  TCGAAGAAATTTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTTGCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAGCATNACCAAGTGGAAGAGGGATTAAATGACCAANTTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTNACCTATCTAGGNCAGAGGTTGGATTGTCAGGNTTCGCGAAATTNNTCCGNGAAAGTGCAAACGAAGGAATTGGAGCATGCCCGTAANTTCAGTGGAATTTGGTCAATAA                                                                                                                ]
[+] EMBL CD064573             [                                                                                                                        GCTAGTTGGA TC TGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG ATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGGGTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAA GAATTGGAGCATGCCCGTAAATTCAGT GAATTT GTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGAT                        ]
[+] EMBL CD190822             [                                                                                                                                                GCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG ATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCGTGTGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCAGG                                                                                                                                                                                              ]




>consensus_9973#1
GTTTAACTTTACAGTTAGTTAACATTACTACAATTTATACAAGCGATTGTTCGAAGAAAT
TTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTT
GCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCC
ATTGCTTTAGATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAG
GCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCA
GGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTC
AGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTACTTGCATCT
TCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAA
GAACTTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9973#0      ------------------------------------------------------------
consensus_9973#1      GTTTAACTTTACAGTTAGTTAACATTACTACAATTTATACAAGCGATTGTTCGAAGAAAT 60
                                                                                  

consensus_9973#0      ------------------------------------------------------------
consensus_9973#1      TTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTT 120
                                                                                  

consensus_9973#0      ------------------------------------------------------------
consensus_9973#1      GCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCC 180
                                                                                  

consensus_9973#0      ------------------------------TTAAATGACCAAATTCTAAATGAATATGAG 30
consensus_9973#1      ATTGCTTTAGATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAG 240
                                                    ******************************

consensus_9973#0      GCTTCTTATATTTATGACCATATGGTGTCTTACCTATCCAGGCCAGAGGTTGGATTGTCA 90
consensus_9973#1      GCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCA 300
                      **** ********************************* *********************

consensus_9973#0      GGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTC 150
consensus_9973#1      GGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTC 360
                      ************************************************************

consensus_9973#0      AGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTAAAAAAGATC 210
consensus_9973#1      AGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTA--------- 411
                      ***************************************************         

consensus_9973#0      GTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAA 270
consensus_9973#1      -----------CTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAA 460
                                 *************************************************

consensus_9973#0      TTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAAT 330
consensus_9973#1      TTGATACAGCAATTGGAAAAGAACTTGAA------------------------------- 489
                      *****************************                               

consensus_9973#0      TAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAAC 390
consensus_9973#1      ------------------------------------------------------------
                                                                                  

consensus_9973#0      AAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTG 450
consensus_9973#1      ------------------------------------------------------------
                                                                                  

consensus_9973#0      CTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGAC 510
consensus_9973#1      ------------------------------------------------------------
                                                                                  

consensus_9973#0      TATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGA 570
consensus_9973#1      ------------------------------------------------------------
                                                                                  

consensus_9973#0      CAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTT 630
consensus_9973#1      ------------------------------------------------------------
                                                                                  

consensus_9973#0      TTTTTATCATTTATTTGGATGCATTGATAAGATATTACTTCAAGTGATTTGTTAATTTGA 690
consensus_9973#1      ------------------------------------------------------------
                                                                                  

consensus_9973#0      A 691
consensus_9973#1      -