cluster # 9976

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Schistosoma mansoni
cluster # 9976 cluster # 9976 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9976#0 length = 661 sequences # 7

consensus_9976#1 length = 533 sequences # 5

consensusID : consensus_9976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 661
fasta sequence

                              [AATATCGCATTAAGCATATTTACGAGAATAGTATTTTACTTAAAAAACTTTGGAGAATGGAGAGCATAAAATATGAATTATGAATGGGTTCGCAAACCTTAACTATAGCGAAAACAACATGAAGTATTATCTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGAACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAATCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCACCAACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGTCCTAATTAGATCCACCTAAAAACATTCATCGATAAAAAAAGTTTAGCCTTACAGACAACTTAACCACGAACATATTCACAAAATGCTCATGTTGAACATTCCAAAACACAAAACTCTTCACCACCTACTCCTTCCTCTCCTCCAAACTCCCTCCCTCACACACTCTCTCATATACTCAC]

[+] EMBL CD129441             [AATATCGCAATAAGCATATTTACGAGAATAGTATTTTACTTAAAAAACTTTGGAGAATGGAGAGCATAAAATATGAATTATGAATGGGTTCGCAAACCTTAACTATAGCGAAAACAACATGAAGTATTATCTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGAACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAATCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCACCAACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGTCCTAATTAGATCCACCTAAAAACATTCATCGATAAAAAAAGTTTAGCCTTACAGACAACTTAACCACGAACATATTCACAAAATGCTCATGTTGAACATTCCAAAACACAAAACTCTTCACCACCTACTCCTTCCTCTCCTCCAAACTCCCTCCCTCACACACTCTCTCATATACTCAC]
[+] EMBL CD129420             [AATATCGCATTAAGCATATTTACGAGAATAGTATTTTACTTAAAAAACTTTGGAGAATGGAGAGCATAAAATATGAATTATGAATGGGTTCGCAAACCTTAACTATAGCGAAAACAACATGAAGTATTATCTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGAACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAATCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCACCAACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGTCCTAATTAGATCCACCTAAAAACATTCATCGATAAAAAAAGTTTAGCCTTACAGACAACTTAACCACGAACATATTCACAAAATGCTCATGTTGAACATTCCAAAACACAAAACTCTTCACCACCTACTCCTTCCTCTCCTCCAAACTCCCTCCCTCACACACTCTC            ]
[+] EMBL CD129487             [AATATCGCATTAAGCATATTTACGAGAATAGTATTTTACTTAAAAAACTTTGGAGAATGGAGAGCATAAAATATGAATTATGAATGGGTTCGCAAACCTTAACTATAGCGAAAACAACATGAAGTATTATTTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGAACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAATCGTATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCACCAACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTGTCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTT                                                                                                                                                                                              ]
[+] EMBL CD066382             [AATATCGCATTAAGCATATTTACGAGAATAGTATTTTACTTAAAAAACTTTGGAGAATGGAGAGCATAAAATATGAATTATGAATGGGTTCGCAAACCTTAACTATAGCGGAAACAACATGAAGTATTATCTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGAACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAATCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACC                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD066998             [                                                                                                             GAACA AACATAAGGTATTATCTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGAACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAATCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCACCAACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATT                                                                                                                                                                                                                                                     ]
[-] EMBL CD066994             [                                                                                                                       TGAAGTATTATCTGCGAAATTCAATACTTATAAACTTGCGAAGTATGAATAAACTGCCAGAACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAATCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCGCCAACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATc                                                                                                                                                                                                                                                     ]
[-] EMBL CD067095             [                                                                                                                                                                                                                                                                                                 TCACCTCGCCAAGTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATAGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAA                                                                                                                                                                                                                                                  ]




>consensus_9976#0
AATATCGCATTAAGCATATTTACGAGAATAGTATTTTACTTAAAAAACTTTGGAGAATGG
AGAGCATAAAATATGAATTATGAATGGGTTCGCAAACCTTAACTATAGCGAAAACAACAT
GAAGTATTATCTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGA
ACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAA
TCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCACCA
ACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAA
CATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAA
CACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGA
GTCCTAATTAGATCCACCTAAAAACATTCATCGATAAAAAAAGTTTAGCCTTACAGACAA
CTTAACCACGAACATATTCACAAAATGCTCATGTTGAACATTCCAAAACACAAAACTCTT
CACCACCTACTCCTTCCTCTCCTCCAAACTCCCTCCCTCACACACTCTCTCATATACTCA
C

consensusID : consensus_9976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 533
fasta sequence

                              [CATGNCAGTTTCATTATTGTCTGTATCGCCATTTGAATGTTGGTGATCAACCTCACCAACTACCTCCNCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGTCCTAATTAGATCCACCTTGTGGTTCGATTGACGTGCATGACGTAAAAGTGACGTTCTATGGCGATAACTCAATGAACACATGTCACATTTGAAGACAGTCGCAGTTAGATTTTCATTTGAAGCATCTTGTTCACTCGATGTTGTTGTTGTCGTCGTCGTCATTGTTGTTGTTGTTGTTATTCCTCCTGATGTCTCCAGTTCACTCGTCGATGGAGACATCGACTTCTTCTGTTCATCTTCAATGGAGTTGTTATGGTGACATTCAGTCGAAACCAAACGTTCATTTGTACAAT]

[-] EMBL CD118447             [CATGNCAGTTTCATTATTGTCTGTATCGCCATTTGAATGTTGGTGATCAACCTCACCAACTACCTCCNCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGTCCTAATTAGATCCACCTTGTGGTTCGATTGACGTGCATGACGTAAAAGTGACGTTCTATGGCGATAACTCAATGAACACATGTCACATTTGAAGACAGTCGCAGTTAGATTTTCATTTGAAGCATCTTGTTCACTCGATGTTGTTGTTGTCGTCGTCGTC                                                                                                                                     ]
[-] EMBL CD120326             [                                                                                   CAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGTCCTAATTAGATCCACCTTGTGGTTCGATTGACGTGCATGACGTAAAAGTGACGTTCTATGGCGATAACTCAATGAACACATGTCACATTTGAAGACAGTCGCAGTTAGATTTTCATTTGAAGCATCTTGTTCACTCGATGTTGTTGTTGTCGT                                                                                                                                            ]
[-] EMBL CD120330             [                                                                                   CAACAACATTAGAATCCAACGTCATCGACTCTGAACATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGTCCTAATTAGATCCACCTTGTGGTTCGATTGACGTGCATGACGTAAAAGTGACGTTCTATGGCGATAACTCAATGAACACATGTCACATTTGAAGACAGTCGCAGTTAGATTTTCATTTGAAGCATCTTGTTCACTCGATGTTGTTGTTGTCGT                                                                                                                                            ]
[-] EMBL CD134147             [                                                                                                                                                                                                                                                                 TGTGGTTCGATTGACGTGCATCACGTAAAAGTGACGTTCTATGGCGATAACTCAATGAACGCATGTCACATTTGAGGACAGTCGCAGTTAGATTTTCATTTGAAGCATCTTGTccg                                                                                                                                                                ]
[-] EMBL CD072634             [                                                                                                                                                                                                                                                                               CGTGCATGACGTAAAAGTGACGTTCTATGGCGATAACTCAATGAACACATGTCACATTTGAAGACAGTCGCAGTTAGATTTTCATTTGAAGCATCTTGTTCACTCGATGTTGTTGTTGTCGTCGTCGTCATTGTTGTTGTTGTTGTTATTCCTCCTGATGTCTCCAGTTCACTCGTCGATGGAGACATCGACTTCTTCTGTTCATCTTCAATGGAGTTGTTATGGTGACATTCAGTCGAAACCAAACGTTCATTTGTACAAT]




>consensus_9976#1
CATGNCAGTTTCATTATTGTCTGTATCGCCATTTGAATGTTGGTGATCAACCTCACCAAC
TACCTCCNCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAACA
TTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAACA
CTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGAGT
CCTAATTAGATCCACCTTGTGGTTCGATTGACGTGCATGACGTAAAAGTGACGTTCTATG
GCGATAACTCAATGAACACATGTCACATTTGAAGACAGTCGCAGTTAGATTTTCATTTGA
AGCATCTTGTTCACTCGATGTTGTTGTTGTCGTCGTCGTCATTGTTGTTGTTGTTGTTAT
TCCTCCTGATGTCTCCAGTTCACTCGTCGATGGAGACATCGACTTCTTCTGTTCATCTTC
AATGGAGTTGTTATGGTGACATTCAGTCGAAACCAAACGTTCATTTGTACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9976#0      AATATCGCATTAAGCATATTTACGAGAATAGTATTTTACTTAAAAAACTTTGGAGAATGG 60
consensus_9976#1      ------------------------------------------------------------
                                                                                  

consensus_9976#0      AGAGCATAAAATATGAATTATGAATGGGTTCGCAAACCTTAACTATAGCGAAAACAACAT 120
consensus_9976#1      ------------------------------------------------------------
                                                                                  

consensus_9976#0      GAAGTATTATCTACGAAATTCAATACTTATAAAATTGCGAAGTATGAATAAACTGCCAGA 180
consensus_9976#1      ------------------------------------------------------------
                                                                                  

consensus_9976#0      ACAATTCAACACCTGATTGTTAAAATAGACGATCATCAAAATTTACAACAATAAATTAAA 240
consensus_9976#1      ----------------------------------------------------CATGNCAG 8
                                                                           *    * 

consensus_9976#0      TCATATAGTCAACTAAATATGAAACATTCAAACAACAATAACAACTACCTCACCTCACCA 300
consensus_9976#1      TTTCATTATTGTCTGTATC---GCCATTTGAATGTTGGTGATCA-------ACCTCACCA 58
                      *   **  *   **  **      ****  **      * *  *       *********

consensus_9976#0      ACTACCTCCCCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAA 360
consensus_9976#1      ACTACCTCCNCAATATTCTCATTCTCAACAACATTAGAATCCAACGTCATCGACTCTGAA 118
                      ********* **************************************************

consensus_9976#0      CATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAA 420
consensus_9976#1      CATTCTTTCCATGTCAAATTCGATACCATCTCATTATCCATGCATCCACTACCATTCAAA 178
                      ************************************************************

consensus_9976#0      CACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGA 480
consensus_9976#1      CACTCCCCTGATCTCCTCATACCAGAGTTATCATTCTTCACATAATCTCTTCTCTTGCGA 238
                      ************************************************************

consensus_9976#0      GTCCTAATTAGATCCACCTAAAAAC---ATT--CATCGATAAA--AAAAGTTTAGCCTTA 533
consensus_9976#1      GTCCTAATTAGATCCACCTTGTGGTTCGATTGACGTGCATGACGTAAAAGTGACGTTCTA 298
                      *******************         ***  * *  ** *   ******   *   **

consensus_9976#0      CAG--ACAACTTAACCA--------------CGAACATATTCACA---AAATGCTCATGT 574
consensus_9976#1      TGGCGATAACTCAATGAACACATGTCACATTTGAAGACAGTCGCAGTTAGATTTTCATTT 358
                        *  * **** **  *               *** * * ** **   * **  **** *

consensus_9976#0      TGAACATTCCAAA-ACACAAAACTCTTCACCACCTACTCCTTCCTCTCCTCCAAACTCCC 633
consensus_9976#1      GAAGCATCTTGTTCACTCGATGTTGTTGTTGTCGTCGTCGTCATTGTTGTTGTTGTTGTT 418
                        * ***       ** * *   * **     * *  ** *   * *  *      *   

consensus_9976#0      -TCCCTCACACACTCTCTCATATACTCAC------------------------------- 661
consensus_9976#1      ATTCCTCCTGATGTCTCCAGTTCACTCGTCGATGGAGACATCGACTTCTTCTGTTCATCT 478
                       * ****      ****   *  ****                                 

consensus_9976#0      -------------------------------------------------------
consensus_9976#1      TCAATGGAGTTGTTATGGTGACATTCAGTCGAAACCAAACGTTCATTTGTACAAT 533