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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 851 fasta sequence
[CGGGCCAANAATTAGGCACGAGGTTCATTACACTATTTTGTTTTGTTTTTAAATAATCCACCAAATGCTATATTTTTTGGAATTATCAAGTCAAACCTCGGTAGTGATACACTGCATTGGATGTTCTAAATTTGATTTACCTATTTCTACTCAGGCAAATAGAAAGTATCACTAGGTTTAATAAAATGTATAACTTACAGCTGAGTACATAAACTTTTATCCACTGAGTGCGTTATATATATTTTTATATTCATGAAATTAAAAACACCTTGTTCTTTAGGTTGACACATTATTGGTCATAGAAGATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCCGAGGTAACTATAGTAAGATTGCCCAAATCGTCAGGTGCTATAACTAGAAGTCCAGATCAGTGGACACGTCAGCGAGATGCTCGAGTCTGCGCCTATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAATCTTCTGAGTATTCAATTTACAAAGTTGGAACTGAGGCTATTCCAGACGCACTTCTCCCACATGGAGCACAAGAAGAAGAAACATGGCGTAATCCCATCCAGGTTTCAGTTAGTCGAGATTTGAAAAATCGTCTGTTGGCAGTTTCTCAAGCTTCAGAACCTTATCAAGTCCCAG-AAGCTCCTGTTTATGGATTTGTCGTAGTTGTCAATGTTTCCGAGGACAAGTCCTCGTTCACCATACTCAGCCCAAGTCCACATCCTCCTCCAAATAATCTATTTTTATTAACCAGTATTTG-TACG-CCATCCTGA-TCA-TGTAA-TTCCTA-GT--AAATTGACC-AT-GTCCTG--AAT-TA-TCCTCTGT]
[+] EMBL CD081367 [CGGGCCAANAATTAGGCACGAGGTTCATTACACTATTTTGTTTTGTTTTTAAATAATCCACCAAATGCTATATTTTTTGGAATTATCAAGTCAAACCTCGGTAGTGATACACTGCATTGGATGTTCTAAATTTGATTTACCTATTTCTACTCAGGCAAATAGAAAGTATCACTAGGTTTAATAAAATGTATAACTTACAGCTGAGTACATAAACTTTTATCCACTGAGTGCGTTATATATATTTTTATATTCATGAAATTAAAAACACCTTGTTCTTTAGGTTGACACATTATTGGTCATAGAAGATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCCGAGGTAACTATAGTAAGATTGCCCAAATCGTCAGGTGCTATAACTAGAAGTCCAGATCAGTGGACACGTCAGCGAGATGCTCGAGTCTGCGCCTATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAATCTTCTGAGTATTCAATTTACAAAGTTGGAACTGAGGCTATTCCAGACGCACTTCTCCCACATGGAGCACAAGAAGAAGAAACATGGCGTAATCCCACTCAGGTTTCAGTTAGTCGAGATTTGAAAAATCGTCTGTTGGCAGTTTCTCAAGCTTCAGAACCTTATCCAGTCCCAGAAAGCTCCTG TTATGGATTTGTCGTAGTTGTCAATGTTTCCGAGGACCAGTCCTCGTTCA CATACTCAGCCC AGTCCA ATCCTCCTC AATAATCTA TTTTATT ACTAGTATTTG TACG CCATCCTGA TCA TGTAA TTCCTA GT AAATTGACC AT GTCCTG AAT TA TCCTC ]
[-] EMBL CD075201 [ TTTAGGTTGACACATTATTGGTCATAGAAGATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCCGAGGTAACTATAGTAAGATTGCCCAAATCGTCAGGTGCTATAACTAGAAGTCCAGATCAGTGGACACGTCAGCGAGATGCTCGAGTCTGCGCCTATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAATCTTCTGAGTATTCAATTTACAAAGTTGGAACTGAGGCTATTCCAGACGCACTTCTCCCACATGGAGCACAAGAAGAAGAAACATGGCGTAATCCCATCCAGGTTTCAGTTAGTCGAGATTTGAAAAATCGTCTGTTGGCAGTTTCTCAAGCTTCAGAACCTTATCAAGTCCCAG AAGCTCCTGTTTATGGATTTGTCGTAGTTGTCAATGTTTCCGAGGACAAGTCCTCGTTCACCATACTCAGCCCAAGTCCACATCCTCCTCCAAATAATCTATTTTTATTAACTAGTATTTGTTACGTCGATCCTGAGTCATTGTAATTTCCTATGTAAAAATTGACCAATGGTCTTGTAAATATATTCCTCTGT]
[+] EMBL CD136124 [ TATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAATCTTCTGAGTATTCAATTTACAAAGTTGGAACTGAGGCTATTCCAGACGCACTTCTCCCACATGGAGCACAAGAAGAAGAAACATGGCGTAATCCCATCCAGGTTTCAGTTAGTCGAGATTTGAAAAATCGTCTGTTGGCAGTTTCTCAAGCTTCAGAACCTTATCAAGTCCCAG AAGCTCCTGTTTATGGGTTTGTCGTAGTTGTCAATGTTTCCGAGGACAAGTCCTCGTTCACCATACTCAGCCCAAGTCCACATCCTCCTCCAAATAATCTATTTTTATTAACCAGT ]
[+] EMBL CD136035 [ TATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAATCTTCTGAGTATTCAATTTACAAAGTTGGAACTGAGGCTATTCCAGACGCACTTCTCCCACATGGAGCACAAGAAGAAGAAACATGGCGTAATCCCATCCAGGTTTCAGTTAGTCGAGATTTGAAAAATCGTCTGTTGGCAGTTTCTCAAGCTTCAGAACCTTATCAAGTCCCAG AAGCTCCTGTTTATGGATTTGTCGTAGTTGTCAATGTTTCCGAGGACAAGTCCTCGTTCACCATACTCAGCCCAAGTCCACATCCTCCTCCAAATAATCTATTTTTATTAACCAGT ]
[-] EMBL CD136066 [ ATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAATCTTCTGAGTATTCAATTTACAAAGTTGGAACTGAGGCTATTCCAGACGCACTTCTCCCACATGGAGCACAAGAAGAAGAAACATGGCGTAATCCCATCCAGGTTTCAGTTAGTCGAGATTTGAAAAATCGTCTGTTGGCAGTTTCTCAAGCTTCAGAACCTTATCAAGTCCCAG AAGCTCCTGTTTATGGATTTGTCGTAGTTGTCAATGTTTCCGAGGACAAGTCCTCGTTCACCATACTCAGCCCAAGTCCACATCCTCCTCCAAATAATCTATTTTTATTAACCAGTA ]
[-] EMBL CD059846 [ TTATCAAGTCCCAG AAGCTCCTGTTTATGGATTTGTCGTAGTTGTCAATGTTTCCGAGGACAAGTCCTCGTTCACCATACTCAGCCCAAGTCCACATCCTCCTCCAAATAATCTATTTTTATTAACCAGTATTTG Tta ]
consensusID : consensus_9978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence
[CCCTCGAGCCAANAATTCGGCACGAGGAGACCGGGAGTTGCTGCCTATATAATCGCGTCATCTGAAGATCAAGAAATTGTGCACGTATATATGAATATTCATGCAAACCTAGAAGTTTCACGACAAAAAGCTGTAAAGGAGCAAAGTAGAGGACCACGCGTATTAGTATGTGGTCAAGAAAGTGTTGGGAAGTCTACACTTTGTCGCACTTTGGCAAGTTATGCGGCCCGTAGAAAACACAAACCAATACTTGTAGATGTTAACGTCGGACTCAACCAGGTGTGTATACCAGCAACTATTGCCGCAATAAGTGTTACCAAACCATATGATTTGATGGAAGGGTGGAGTCTAGAGGAAGATCCGCTAGTGTTTTGTTTCGGTCACACCGATCCCGCAAGTAACTTGAATCTTTTTCGAGAACAAGTGAATCGACTAGCTGAACTTATCAATATTCGTTCTGAAAATGATATGAGTATATTCACTAGCGGTTGTATAATCAATATGAGTGGATTTCGTAAAGATGATTCAGATGGTGGGTCAAGTAAAGAAAAGGGTATACAAGCCATACGAACAACTGCTGCAGCNTTTCGAAGTTGACACATTATTGGTCATAGAAGATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCCGAGGTAACTATAGTAAGATTGCCCAAATCGTCAGGTGCTATAACTAGAAGTCCAGATCAGTGGACACGTCAGCGAGATGCTCGAGTCTGCGCCTATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAAT]
[+] EMBL CD081931 [CCCTCGAGCCAANAATTCGGCACGAGGAGACCGGGAGTTGCTGCCTATATAATCGCGTCATCTGAAGATCAAGAAATTGTGCACGTATATATGAATATTCATGCAAACCTAGAAGTTTCACGACAAAAAGCTGTAAAGGAGCAAAGTAGAGGACCACGCGTATTAGTATGTGGTCAAGAAAGTGTTGGGAAGTCTACACTTTGTCGCACTTTGGCAAGTTATGCGGCCCGTAGAAAACACAAACCAATACTTGTAGATGTTAACGTCGGACTCAACCAGGTGTGTATACCAGCAACTATTGCCGCAATAAGTGTTACCAAACCATATGATTTGATGGAAGGGTGGAGTCTAGAGGAAGATCCGCTAGTGTTTTGTTTCGGTCACACCGATCCCGCAAGTAACTTGAATCTTTTTCGAGAACAAGTGAATCGACTAGCTGAACTTATCAATATTCGTTCTGAAAATGATATGAGTATATTCACTAGCGGTTGTATAATCAATATGAGTGGATTTCGTAAAGATGATTCAGATGGTGGGTCAAGTAAAGAAAAGGGTATACAAGCCATACGAACAACTGCTGCAGCNTTTCGAAGTTGACACATTATTGGTCATAGAAGATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCC ]
[-] EMBL CD141602 [ GTGGGTCAAGTAAAGAAAAGGGTATACAAGCCATACGAACAACTGCTGCAGC TTTCGAAGTTGACACATTATTGGTCATAGAAGATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCCGAGGTAACTATAGTAAGATTGCCCAAATCGTCAGGTGCTATAACTAGAAGTCCAGATCAGTGGACACGTCAGCGAGATGCTCGAGTCTGCGCCTATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATCAAATAACGCTTAAAT]
consensusID : consensus_9978#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 669 fasta sequence
[TACATTTGACCTTTAAGCATAGGATCTCTTATTTGATTCAAACTGGTTTTCCAACTGCTTTTGCATAATCTGCCATCATTTCATTGAAGAGGAAGTCATAAAACCGGTGAATCCACATTTAGTAGAAATGAATGGCGTGAAGGATTTTACACGATCTAACCCGTCTATTCGATCATACACTCTGGAGAAATATCAGATGCTTCGTTTTGAAGTCACTTCGCCATCTGGCTTGACTTTAGTTTCTGGTGCTGCTGAAGTTTTTGGTACTGAACTCGTTTGTGGTTGGGAGTTACAGTTATATCCAGGTCAACGAGGAACAGTTGTTACATTCCATGGTTGTAAACTGATTGTTCAAGACCAGGGAGTTGCTGCCTATATAATCGCGTCATCTGAAGATCAAGAAATTGTGCACGTATATATGAATATTCATGCAAACCTAGAAGTTTCACGACAAAAAGCTGTAAAGGAGCAAAGTAGAGGACCACGCGTATTAGTATGTGGTCAAGAAAGTGTTGGGAAGTCTACACTTTGTCGCACTTTGGCAAGTTATGCGGCCCGTAGAAAACACAAACCAATACTTGTAGATGTTAACGTCGGACTCAACCAGGTGTGTATACCAGCAACTATTGCCGCAATAAGTGTTACCAAACCATATGATTTGATGGAAGG]
[+] EMBL AI975655 [TACATTTGACCTTTAAGCATAGGATCTCTTATTTGATTCAAACTGGTTTTCCAACTGCTTTTGCATAATCTGCCATCATTTCATTGAAGAGGAAGTCATAAAACCGGTGAATCCACATTTAGTAGAAATGAATGGCGTGAAGGATTTTACACGATCTAACCCGTCTATTCGATCATACACTCTGGAGAAATATCAGATGCTTCGTTTTGAAGTCACTTCGCCATCTGGCTTGACTTTAGTTTCTGGTGCTGCTGAAGTTTTTGGTACTGAACTCGTTTGTGGTTGGGAGTTACAGTTATATCCAGGTCAACGAGGAACAGTTGTTACATTCCATGGTTGTAAACTGATTGTTCAAGACCAGNGAGTTGCTGCCTATATAATCGCGTCATCTGAAGATCAAGAAATTGTGCACGTATATATGAATATTCATGCAAACCTAGAA ]
[+] EMBL AW017190 [TACATTTGACCTTTAAGCATAGGATCTCTTATTTGATTCAAACTGGTTTTCCAACTGCTTTTGCATAATCTGCCATCATTTCATTGAAGAGGAAGTCATAAAACCGGTGAATCCACATTTAGTAGAAATGAATGGCGTGAAGGATTTTACACGATCTAACCCGTCTATTCGATCATACACTCTGGAGAAATATCAGATGCTTCGTTTTGAAGTCACTTCGCCATCTGGCTTGACTTTAGTTTCTGGTGCTGCTGAAGTTTTTGGTACTGAACTCGTTTGTGGTTGGGAGTTACAGTTATATCCAGGTCAACGAGGAACAGTTGTTACATTCCATGGTTGTAAACTGATTGTTCAAGACCAGGGAGTTG ]
[+] EMBL CD163305 [ ACATTTAGTAGAAATGAATGGCGTGAAGGATTTTACACGATCTAACCCGTCTATTCGATCATACACTCTGGAGAAATATCAGATGCTTCGTTTTGAAGTCACTTCGCCATCTGGCTTGACTTTAGTTTCTGGTGCTGCTGAAGTTTTTGGTACTGAACTCGTTTGTGGTTGGGAGTTACAGTTATATCCAGGTCAACGAGGAACAGTTGTTACATTCCATGGTTGTAAACTGATTGTTCAAGACCAGGCAGTTGCTGCCTATATAATCGCGTCATCTGAAGATCAAGAAATTGTGCACGTATATATGAATATTCATGCAAACCTAGAAGTTTCACGACAAAA ]
[+] EMBL CD153679 [ GGTTGTAAACTGATTGTTCAAGACCAGGGAGTTGCTGCCTATATAATCGCGTCATCTGAAGATCAAGAAATTGTGCACGTATATATGAATATTCATGCAAACCTAGAAGTTTCACGACAAAAAGCTGTAAAGGAGCAAAGTAGAGGACCACGCGTATTAGTATGTGGTCAAGAAAGTGTTGGGAAGTCTACACTTTGTCGCACTTTGGCAAGTTATGCGGCCCGTAGAAAACACAAACCAATACTTGTAGATGTTAACGTCGGACTCAACCAGGTGTGTATACCAGCAACTATTGCCGCAATAAGTGTTACCAAACCATATGATTTGATGGAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9978#1 CCCTCGAGCCAANAATTCGGCACGAGGAG----ACCGGGAGTTGCTGCCTATATAATCGC 56
consensus_9978#2 -----------------------------------------------------TACATTT 7
consensus_9978#0 ----CGGGCCAANAATTAGGCACGAGGTTCATTACACTATTTTGTTTTGTTTTTAAATAA 56
**
consensus_9978#1 GTCATCTGAAGATCAA------GAAATTGTGCACG-TATATATGAATATTCATGCA--AA 107
consensus_9978#2 GACCTTTAAGCAT-AG------GATCTCTTATTTGATTCAAACTGGTTTTCCAACT--GC 58
consensus_9978#0 TCCACCAAATGCTATATTTTTTGGAATTAT-CAAGTCAAACCTCGGTAGTGATACACTGC 115
* * * * * * * * * * *
consensus_9978#1 CCTAGAAGTTTCA----CGAC--AAAAAGCTGTAAAGGAGCAAAGTAGAGG----ACCAC 157
consensus_9978#2 TTTTGCATAATC-----TGCC--ATCATTTCATTGAAGAGGAAGTCATAAA----ACCG- 106
consensus_9978#0 ATTGGATGTTCTAAATTTGATTTACCTATTTCTACTCAGGCAAATAGAAAGTATCACTAG 175
* * * * * * ** * **
consensus_9978#1 GCGTATTAGTATGTGGTCAAGA-AAGTG-TTGGGAAG---TCTACACTTTGTCGCAC-TT 211
consensus_9978#2 GTGAATCCACATTTAGTAGAAATGAATG-GCGTGAAGGATTTTACACGATCTAACCCGTC 165
consensus_9978#0 GTTTAATAAAATGTATAACTTACAGCTGAGTACATAAACTTTTATCCACTG-AGTGCGTT 234
* * ** * * ** * * ** * * * *
consensus_9978#1 TGGCAAGTTATGCGGCCCGTAGAAAACACAAACCAATACTTGTAGATGTTAACGTCGGAC 271
consensus_9978#2 TATTCGATCATACACTCTGGAGAAATATCAGAT-GCTTCGTTTTGAAGTCACTTCGCCAT 224
consensus_9978#0 ATATATATTTTTATATTCAT-GAAATTAAAAACACCTTGTTCTTTAGGTTGACACATTAT 293
* * **** * * * * * * ** *
consensus_9978#1 TCA--ACCAGGTGTGTATACCAGCAACTATTGCCGCAATAAGTGTTACCAAACCATATGA 329
consensus_9978#2 CTG--GCTTGACTTTAGTTTCTGG---TGCTGCTGAAGTTTTTGGTACTGAACTCGTT-- 277
consensus_9978#0 TGGTCATAGAAGATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCCGAGGTAA 353
* * * * * * * * * *
consensus_9978#1 TTTGATGGAAGGGTGGAGTCTAGAGGAAGATCCGCTAGTGTTTTGTTTCGGTCACACCGA 389
consensus_9978#2 TGTGGTTGGGAGTTACAGT-TATATCCAGGTCAACGAG-GAACAGTT---GTTACATT-- 330
consensus_9978#0 CT--ATAGTAAGATTGCCCAAATCGTCAGGTGCTATAACTAGAAGTCCAGAT--CAGTGG 409
* * * * * ** * * ** * **
consensus_9978#1 TCCCGCAAGTAACTTGAATCTTTTTCGAGAACAAGTGAAT--CGACTAGC--TGAACTTA 445
consensus_9978#2 CCATGGTTGTAAACTGA---TTGTTCAAGACCAGGGAGTTGCTGCCTATA--TAATCGCG 385
consensus_9978#0 ACACGTCAGCGAGATGC-TCGAGTCTGCGCCTATTTACATGGCGAAAACCCCTTGAGACG 468
* * * * ** * * * * * * *
consensus_9978#1 TCAATATTCGTTCTGAAAATGATATGAGTATATTCACTAGC--GGTTGTATAATCAATA- 502
consensus_9978#2 TCATCTGAAGATCAAGAAATTGTGCACGTATAT--ATGAAT--ATTCATGCAAACC-TA- 439
consensus_9978#0 TCTACATCCACATCAAATAACGCTTAAATCTTCTGAGTATTCAATTTACAAAGTTGGAAC 528
** * * * * * * * * *
consensus_9978#1 TGAGTGGATTTCGTAAAGATGATTCAGATGGTGGGT-CAAGTAAAGAAAAGGGTATACAA 561
consensus_9978#2 GAAGT----TTCACGACAAAAAGCTGTAAAG-GAGC-AAAGTAGAGGACCACGCGTATTA 493
consensus_9978#0 TGAGGCTATTCCAGACGCACTTCTCCCACATGGAGCACAAGAAGAAGAAACATGGCGTAA 588
** * * * * * * *** * * * *
consensus_9978#1 GCC-ATACGAA---CAACTGCTGCAGCNTTTCGAAGTTGACACATTATTGGTCATAGAAG 617
consensus_9978#2 GT--ATGTGGT---CAAGAA----AGTGTTGGGAAGTCTACACTTTGTCGCACTTTGGCA 544
consensus_9978#0 TCCCATCCAGGTTTCAGTTAGTCGAGATTTGAAAAATCGTCTGTTGGCAGTTTCTCAAGC 648
** ** ** ** ** * * * * *
consensus_9978#1 ATGGATTTTTGGCTTCGTTCCTGCGTGAAGATCTTCCTCCCGAGGTAACTATAGT-AAGA 676
consensus_9978#2 A--GTTATGCGGCC---------CGTAGAAAACACAAACC---AATACTTGTAG---ATG 587
consensus_9978#0 TTCAGAACCTTATCAAGTC----CCAGAAGCTCCTGTTTATGGATTTGTCGTAGTTGTCA 704
* * * * ***
consensus_9978#1 TTGCCCAAATCGTCAGGTGCTATAACTAGAAGTCCAGATCA-GTGGACA-CGTCAGCGAG 734
consensus_9978#2 TT------AACGTCGGACTC---AACCAGGTGTGTATACCA-GCAACTA-TTGCCGCAAT 636
consensus_9978#0 ATGTTTCCGAGGACAAGTCCTCGTTCACCATACTCAGCCCAAGTCCACATCCTCCTCCAA 764
* * * * * * ** * * * * *
consensus_9978#1 ATGCTCGAGTCTGCGCCTATTTACATGGCGAAAACCCCTTGAGACGTCTACATCCACATC 794
consensus_9978#2 AAGTGTTA--CCAAACCATATGATTTGATGGAAGG------------------------- 669
consensus_9978#0 ATAATCTA-TTTTTATTAACCAGTATT-TGTACGCCATCCTGATCATGTAATTCCTAGTA 822
* * * * *
consensus_9978#1 AAATAACG----CTTAAAT---------- 809
consensus_9978#2 -----------------------------
consensus_9978#0 AATTGACCATGTCCTGAATTATCCTCTGT 851
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||