cluster # 9983

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Schistosoma mansoni
cluster # 9983 cluster # 9983 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9983#0 length = 859 sequences # 11

consensus_9983#1 length = 426 sequences # 1

consensusID : consensus_9983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 859
fasta sequence

                              [CGAGCCAAGATTCGGCACGAGGCTATTGTACTTAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT-TGATCA-AGAGAAAGAA-ATTTCCA-ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT-ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTCTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGAAACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATATAATTTCTCCGAAATACAAATTGTAAAATGAAAAAAAAGAAGAAGGAATTATGAAACCTACCAAAAGATTATGTGTATGAAATGATGTTAATGGCAAATGTTGTATGTATGTATATTATT]

[+] EMBL CD082663             [CGAGCCAAGATTCGGCACGAGGCTATTGTACTTAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTCTGAAGA                                                                                                                                                                                                                         ]
[+] EMBL CD149347             [                                                                                                                 ATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAAAGCAAGACTCAACAGCTGCTTGATNACAATTGGTATCTTCACTTTAATTTTCTTTATCCGTCTC TTTTATTACA                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD059336             [                                                                                                                     TTCAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGATATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTC                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD135377             [                                                                                                                                                                                          GTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTGCTCAACACAAACCCTTACTCCAAATG                                                                                                                                                                                                                                                            ]
[+] EMBL CD145631             [                                                                                                                                                                                                      AAACAGCCGCACTACTATGATCAGGGAG AAGAATGCTTCCAGATGAATTACCTTATTCCCCGTACAGAGAATGCTTTAATCCTGACTATGACATTACATCCAGACTTGACAACTATGGTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAGCAATTGTTATTTTCACTTTAATTNTCTTTATCCGTCTCTTTTTATTACAAGC                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD153326             [                                                                                                                                                                                                       AACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCCTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCC                                                                                                                                                                                                                                                                 ]
[+] EMBL CD145548             [                                                                                                                                                                                                       AACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAA                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD145668             [                                                                                                                                                                                                        ACCGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCTACAGATGTTTGATAACAATTGTGATTTTCACTTTAATTTTCTTTATCCGTGTCTTTTTATTACAAGCACATCGTTGTCTACACAAACCCTTACTCCt                                                                                                                                                                                                                                                                ]
[-] EMBL CD149491             [                                                                                                                                                                                                                                                            TATTCCCCGTACAATGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAANTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAA                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD076259             [                                                                                                                                                                                                                                                                                                                              GGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTTTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTTTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGAAACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATATAATTTCTCCGAAATACAAATTGTAAAATGAAAAAAAAGAAGAAGGAATTATGAAACCTACCAAAAGATTATGTGTATGAAATGATGTTAATGGCAAATGTTGTATGTATGTATATTATT]
[-] EMBL CD133922             [                                                                                                                                                                                                                                                                                                                                                                                                                             CTGATGTACCGAATGATTATCTACCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTCTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGAAACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATATAATTTCTCCGAAATACAAAT                                                                                                   ]




>consensus_9983#0
CGAGCCAAGATTCGGCACGAGGCTATTGTACTTAATGTGGCGCTGATTCGCTTGGCTGTG
ATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTA
AAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAG
CACGCTGTTGGGCATATGAAACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATG
AATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTATACATTACATCCAGACT
TGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAG
TTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGA
ATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAA
TGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTT
AATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACT
CCAAATGATTAACAACAGTAGAAAAGACCACTTTTCTGAAGATTTAGGTTCAATAAAAAA
TATTCTTGTCTCAAATGTGAAACATTGACAATTTTAATTATTGCTATGATTACCATTATC
ACATGCCATGGAGAAGATATAATTTCTCCGAAATACAAATTGTAAAATGAAAAAAAAGAA
GAAGGAATTATGAAACCTACCAAAAGATTATGTGTATGAAATGATGTTAATGGCAAATGT
TGTATGTATGTATATTATT

consensusID : consensus_9983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [ATGTATTTCAGTGTTTTCCGAGCCGTTATAAATGACGTAGTTGCATTTTATCGACCAACAACTATTGTACTTCAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTA]

[+] EMBL CD197403             [ATGTATTTCAGTGTTTTCCGAGCCGTTATAAATGACGTAGTTGCATTTTATCGACCAACAACTATTGTACTTCAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTA]




>consensus_9983#1
ATGTATTTCAGTGTTTTCCGAGCCGTTATAAATGACGTAGTTGCATTTTATCGACCAACA
ACTATTGTACTTCAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAAT
CTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTA
TTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAA
ACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTAC
ATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAAT
GCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAA
CTTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9983#0      -----------------------------------CGAGCCAAGATT----CGGCACGAG 21
consensus_9983#1      ATGTATTTCAGTGTTTTCCGAGCCGTTATAAATGACGTAGTTGCATTTTATCGACCAACA 60
                                                         **       ***    ** *     

consensus_9983#0      GCTATTGTACTT-AATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAAT 80
consensus_9983#1      ACTATTGTACTTCAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAAT 120
                       *********** ***********************************************

consensus_9983#0      CTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTA 140
consensus_9983#1      CTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTA 180
                      ************************************************************

consensus_9983#0      TTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAA 200
consensus_9983#1      TTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAA 240
                      ************************************************************

consensus_9983#0      ACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTAC 260
consensus_9983#1      ACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTAC 300
                      ************************************************************

consensus_9983#0      ATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAAT 320
consensus_9983#1      ATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAAT 360
                      ************************************************************

consensus_9983#0      GCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAA 380
consensus_9983#1      GCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAA 420
                      ************************************************************

consensus_9983#0      CTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTT 440
consensus_9983#1      CTTGTA------------------------------------------------------ 426
                      ******                                                      

consensus_9983#0      TGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAA 500
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCT 560
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      TTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTA 620
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GAAAAGACCACTTTTCTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGA 680
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      AACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATAT 740
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      AATTTCTCCGAAATACAAATTGTAAAATGAAAAAAAAGAAGAAGGAATTATGAAACCTAC 800
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      CAAAAGATTATGTGTATGAAATGATGTTAATGGCAAATGTTGTATGTATGTATATTATT 859
consensus_9983#1      -----------------------------------------------------------