cluster # 9986

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Schistosoma mansoni
cluster # 9986 cluster # 9986 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9986#0 length = 998 sequences # 11

consensus_9986#1 length = 263 sequences # 1

consensusID : consensus_9986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 998
fasta sequence

                              [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT--TT--TTT-----TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG-TCCTGATGAC-ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATT-CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC-TCG-CGAATTTCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGTTCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG]

[+] EMBL AI977677             [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT  TT  TTT     TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGA                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AI976873             [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT  TT  TTT     TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AI395486             [                        TTTTTTTTTTTTTTTTGTTTAATTAATTTAAAAGTCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTTGGGTTGG TTTTCCACTGACC AATTGCTCCTCTGTA TCACTCCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD075103             [                                                                    AATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAAATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAAAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAAAAAAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG T                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD161059             [                                                                            TTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTTATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAGCCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD063085             [                                                                                                                                                                                                                                                                           AGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTTTGTTCCTGATGACAACATGAAA                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD081274             [                                                                                                                                                                                                                                                                                                                                                                                     TTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG TCCTGATGAC ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATTCCCCTTGATGCAGAAATACTATTCCG                                                                                                                                             ]
[+] EMBL CD149727             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG TCCTGATGAC ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTCTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATT CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATTTACTTCG CGAATTTCAT                                                                                              ]
[-] EMBL SMAA69247            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTA CAT AC  TTTACTCTAGGAGCATGGG  CCAACCACGGATGCAATCACCTTGGTATT CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATT                                                                                             ]
[+] EMBL CD148128             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGTTCAAAT                                ]
[-] EMBL CD097531             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATTTGGTCTGCGACCATCAACTCTCCTACCGTTATAAAACATTTCAGCCATCACACGTTCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG]




>consensus_9986#0
ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGATGATA
ATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACT
CAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCA
TCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAG
TGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCA
AGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTC
TGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATAT
ACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAAC
TGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGT
TGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATC
TATTTGAGACATTGGGTACTTTTCTGTCCTGATGACACATGAAAATATCTCCTCAATGGC
AGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGT
CGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATC
ACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATTCCCTTG
ATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTACTCGCGAATT
TCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGT
TCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG

consensusID : consensus_9986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [AGAGCGATGGAGATGAATTATTTCAAGAAAAATATGGGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGCAGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGTCTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT]

[-] EMBL CD068998             [AGAGCGATGGAGATGAATTATTTCAAGAAAAATATGGGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGCAGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGTCTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT]




>consensus_9986#1
AGAGCGATGGAGATGAATTATTTCAAGAAAAATATGGGTGTGAGACATTGCGGGTTTGTG
TGTCAGAGTGACACATGAAAATATATCGTCAATGGCAGGAGCGAGATCAGTCGTTGATCT
ATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGTCTATGCAAAAGGAGGTTTAGTAAA
TTAACACGTTATGGTTGCACCATCTGAAGAACCATCACCTTTTACTCTAGGAGCATGGGG
CCCAACCACGGATGCAATCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9986#0      ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGATGATA 60
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      ATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACT 120
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      CAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCA 180
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      TCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAG 240
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      TGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCA 300
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      AGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTC 360
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      TGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATAT 420
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      ACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAAC 480
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      TGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGT 540
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      TGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATC 600
consensus_9986#1      ------------------------AGAGCGATGGAGATGAATTATTTCAAGAAAAATATG 36
                                              ***** **     ***** * ************** 

consensus_9986#0      TATTTGAGACATTGGGTACTTTTCTGTCCTGATGACACATGAAAATATCTCCTCAATGGC 660
consensus_9986#1      GGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGC 96
                        * ********** *   ** * ****    **************** ** ********

consensus_9986#0      AGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGT 720
consensus_9986#1      AGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGT 156
                      ** *** * **** ***************** ** ********   ******* ******

consensus_9986#0      CGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATC 780
consensus_9986#1      CTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATC 216
                      * ************* ********** ********* ************* ** ******

consensus_9986#0      ACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATTCCCTTG 840
consensus_9986#1      ACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT------------- 263
                      ***********************************************             

consensus_9986#0      ATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTACTCGCGAATT 900
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      TCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGT 960
consensus_9986#1      ------------------------------------------------------------
                                                                                  

consensus_9986#0      TCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG 998
consensus_9986#1      --------------------------------------