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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 998 fasta sequence
[ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT--TT--TTT-----TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG-TCCTGATGAC-ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATT-CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC-TCG-CGAATTTCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGTTCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG]
[+] EMBL AI977677 [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT TT TTT TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGA ]
[+] EMBL AI976873 [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT TT TTT TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGG ]
[+] EMBL AI395486 [ TTTTTTTTTTTTTTTTGTTTAATTAATTTAAAAGTCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTTGGGTTGG TTTTCCACTGACC AATTGCTCCTCTGTA TCACTCCCGA ]
[+] EMBL CD075103 [ AATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAAATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAAAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAAAAAAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG T ]
[-] EMBL CD161059 [ TTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTTATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAGCCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACC ]
[-] EMBL CD063085 [ AGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTTTGTTCCTGATGACAACATGAAA ]
[-] EMBL CD081274 [ TTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG TCCTGATGAC ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATTCCCCTTGATGCAGAAATACTATTCCG ]
[+] EMBL CD149727 [ AGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG TCCTGATGAC ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTCTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATT CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATTTACTTCG CGAATTTCAT ]
[-] EMBL SMAA69247 [ GTA CAT AC TTTACTCTAGGAGCATGGG CCAACCACGGATGCAATCACCTTGGTATT CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATT ]
[+] EMBL CD148128 [ GATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGTTCAAAT ]
[-] EMBL CD097531 [ ATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATTTGGTCTGCGACCATCAACTCTCCTACCGTTATAAAACATTTCAGCCATCACACGTTCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG]
consensusID : consensus_9986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[AGAGCGATGGAGATGAATTATTTCAAGAAAAATATGGGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGCAGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGTCTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT]
[-] EMBL CD068998 [AGAGCGATGGAGATGAATTATTTCAAGAAAAATATGGGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGCAGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGTCTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9986#0 ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGATGATA 60
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 ATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACT 120
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 CAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCA 180
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 TCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAG 240
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 TGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCA 300
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 AGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTC 360
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 TGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATAT 420
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 ACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAAC 480
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 TGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGT 540
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 TGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATC 600
consensus_9986#1 ------------------------AGAGCGATGGAGATGAATTATTTCAAGAAAAATATG 36
***** ** ***** * **************
consensus_9986#0 TATTTGAGACATTGGGTACTTTTCTGTCCTGATGACACATGAAAATATCTCCTCAATGGC 660
consensus_9986#1 GGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGC 96
* ********** * ** * **** **************** ** ********
consensus_9986#0 AGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGT 720
consensus_9986#1 AGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGT 156
** *** * **** ***************** ** ******** ******* ******
consensus_9986#0 CGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATC 780
consensus_9986#1 CTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATC 216
* ************* ********** ********* ************* ** ******
consensus_9986#0 ACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATTCCCTTG 840
consensus_9986#1 ACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT------------- 263
***********************************************
consensus_9986#0 ATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTACTCGCGAATT 900
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 TCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGT 960
consensus_9986#1 ------------------------------------------------------------
consensus_9986#0 TCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG 998
consensus_9986#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||