These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 932 fasta sequence [CTCCAGGCCAANAATTTGGCACGAGGATTATATTGAACGAAAATGTAGTGAACCAGTGTTTCCACCAAACAATGTATTTCAAGTGTTTACCTTTCAGAAAAGTTATAGGGTAGAATAGTTAAACATACAAAAGTGTGTTAGAAATTTAGACGGATAAGGGCTTCGAACTAGTCACGTAACTGGACACAAGATAACCAATAGGAATAAATTCGCACATCTAACAGTCACATGGCTGTCTTGACCTTTCGTAGCCCAAATAAGTATACGAATAAATTACTTCCATGTGCTTGCACTTAATGTTGTCTTTCCTTTTGTACATTTTAATTTTTCTTTTATTTAGGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAATGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTACAATATGGAGACCTAATTNTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGAAGCTGGATTAGATGATTTATGNTTCTAT-AAATTTAGCGTAGAATGACTATATTTTTACTGAAAGTTGA-TGTCTTCGT-AAACTACTT-ATGCTNCACTG-GTG-TCGC-AGACATT-AAACTGNNT-ACGCA-CTTNACATNAGGNNTG-TACTGNNGT-AGA-TATA-CTTNGTCACTGG--AACGTC-TTTCA-CTG-GGNA-TATCAG-GT-CCGACT-AGTCACACTTG] [+] EMBL CD081146 [CTCCAGGCCAANAATTTGGCACGAGGATTATATTGAACGAAAATGTAGTGAACCAGTGTTTCCACCAAACAATGTATTTCAAGTGTTTACCTTTCAGAAAAGTTATAGGGTAGAATAGTTAAACATACAAAAGTGTGTTAGAAATTTAGACGGATAAGGGCTTCGAACTAGTCACGTAACTGGACACAAGATAACCAATAGGAATAAATTCGCACATCTAACAGTCACATGGCTGTCTTGACCTTTCGTAGCCCAAATAAGTATACGAATAAATTACTTCCATGTGCTTGCACTTAATGTTGTCTTTCCTTTTGTACATTTTAATTTTTCTTTTATTTAGGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAATGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTACAATATGGAGACCTAATTNTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGAAGCTGGATTAGATGATTTATGNTTCTAT AAATTTAGCGTAGAATGACTATATTTTTACTGAAAGTTGA TGTCTTCGT AAACTACTT ATGCTNCACTG GTG TCGC AGACATT AAACTGNNT ACGCA CTTNACATNAGGNNTG TACTGNNGT AGA TATA CTTNGTCACTGG AACGTC TTTCA CTG GGNA TATCAG GT CCGACT AGTC ] [-] EMBL CD074966 [ TACTTCCATGTGCTTGCACTTAATGTTGTCTTTCCTTTTGTACATTTTAATTTTTCTTTTATTTAGGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAATGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTACAATATGGAGACCTAATTTTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGAAGCTGGATTAGATGATTTATG TTCTATAAAATTTAGCGTAGAATGACTATATTTTTACTG AAGTTGATTGTCTTCGTAAAACTACTTCATGCTTCACTGTGTGTTCGCAAGACATTAAAACTGTTTAACGCACCTTTACATTATGGTTGTTACTGTGTTAAGATTATACCTTTGTCACTGGAAAACGTCTTTTCAGCTGTGGTATTATCAGTGTCCCGACTAAGT ACACTTG] consensusID : consensus_9987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence [ACAACGCAGCGATTAATACTCCTTGCCTTAAGTATAGTCAGTAAGGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAATGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTACAATATGGAGACCTAATTTTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGAAGCTGGATTAGATGATTTATGTTCTATAAAATTTAGCGTAGAATGACTATATTTTTACTGAAGTTGATTGTCTTCGTAAAACTACTTCATGCTTCACTGTGTGTTCGCAAGACATTAAAACTGTTTAACGCACCTTTACATTATGGTTGTTACTGTGTTAAGATTATACCTTTGTCACTGGAAAACGTCTTTTCAGCTGTGGTATTATCAGTGTCCCGACTAAGTACACTTGTTTACAGCTAAAAAAAAAAAAAAAA] [-] EMBL CD137007 [ACAACGCAGCGATTAATACTCCTTGCCTTAAGTATAGTCAGTAAGGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAATGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATC ] [+] EMBL CD117220 [ GCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCGGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCACGTCAGGAATTCCAAAACGTAAATAATGAGATTTGGTTGAAGGTAACCCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTA ] [-] EMBL CD180326 [ TTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAATGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTACAATATGGAGACCTAATTTTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGAAGCTGGATTAGATGATTTATGTTCTATAAAATTTAGCGTAGAATGACTATATTTTTACTGAAGTTGATTGTCTTCGTAAAACTACTTCATGCTTCACTGTGTGTTCGCAAGACATTAAAACTGTTTAACGCACCTTTACATTATGGTTGTTACTGTGTTAAGATTAT ] [-] EMBL AI395691 [ AATATCGATAA TACCAAAAGAA TTCACTACAATATGGAGACCTAATTTTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGAAGCTGGATT GATGATTTATGTTCTATAAAATTTAGCGTAGAATGACTATATTTTTACTGAAGTTGATTGTCTTCGTAAAACTACTTCATGCTTCACTGTGTGTTCGCAAGACATTAAAACTGTTTAACGCACCTTTACATTATGGTTGTTACTGTGTTAAGATTATACCTTTGTCACTGGAAAACGTCTTTTCAGCTGTGGTATTATCAGTGTCCCGACTAAGTACACTTGTTTACAGCTAAAAAAAAAAAAAAAA] consensusID : consensus_9987#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 321 fasta sequence [TGTGGTGAAGGTAGATATGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGT-AAATAATGAG-ATTTGGTTGAAGGT-AAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATT] [-] EMBL CD137022 [TGTGGTGAAGGTAGATATGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGT AAATAATGAG ATTTGGTTGAAGGT AAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATT] [-] EMBL BG931568 [ TCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACG ] [+] EMBL CD169914 [ GGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAAATAATGAGAATTTGGTTGAAGGTAAAACCAGGTGGAACGACAACGATC ] [+] EMBL CD092366 [ GCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGT AAATAATGAG ATTTGGTTGAAGGT AAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAAT ] [-] EMBL CD169928 [ AAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCCAAACGT AAATAATGAG ATTTGGTTGAAGGT AAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGTCTGGACCCCAGCAGAGTTAATATCGATAATTACCAAAAGAATT] consensusID : consensus_9987#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [CTCATACGAAACGGCGGGCAGGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGGCTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACG] [-] EMBL BG932896 [CTCATACGAAACGGCGGGCAGGTTTATTCGGCTATATTAGGTTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGGGCTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCCTTTGGATTCACTGCCGGCCGGTATTTTAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9987#0 CTCCAGGCCAANAATTTGGCACGAGGATTATATTGAACGAAAATGTAGTGAACCAGTGTT 60 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 ------------------------------------------------------------ consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 TCCACCAAACAATGTATTTCAAGTGTTTACCTTTCAGAAAAGTTATAGGGTAGAATAGTT 120 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 ------------------------------------------------------------ consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 AAACATACAAAAGTGTGTTAGAAATTTAGACGGATAAGGGCTTCGAACTAGTCACGTAAC 180 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 ------------------------------------------------------------ consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 TGGACACAAGATAACCAATAGGAATAAATTCGCACATCTAACAGTCACATGGCTGTCTTG 240 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 ------------------------------------------------------------ consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 ACCTTTCGTAGCCCAAATAAGTATACGAATAAATTACTTCCATGTGCTTGCACTTAATGT 300 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 -----------------------------------------------------ACAACGC 7 consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 TGTCTTTCCTTTTGTACATTTTAATTTTTCTTTTATTTAGGTTTATTCGGCTATATTAGG 360 consensus_9987#3 -------------------CTCATACGAAACGGCGGGCAGGTTTATTCGGCTATATTAGG 41 consensus_9987#1 AGCGATTAATACTCCTTGCCTTAAGTATA--GTCAGTAAGGTTTATTCGGCTATATTAGG 65 consensus_9987#2 --------------------TGTGGTGAA--GGTAGATATGTTTATTCGGCTATATTAGG 38 * * ******************** consensus_9987#0 TTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGG 420 consensus_9987#3 TTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGG 101 consensus_9987#1 TTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGG 125 consensus_9987#2 TTATGTGGTTGCGCTAGATCTAACTGATCGATCACTTCAGAATCAACTAAAAGCAAGCGG 98 ************************************************************ consensus_9987#0 ACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCC 480 consensus_9987#3 GCTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCC 161 consensus_9987#1 ACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCC 185 consensus_9987#2 ACTCCCATGGACGATGGCTAAATGTTTCGACACAGCTTGCCCTGTGGGGCCAATTCTTCC 158 *********************************************************** consensus_9987#0 TTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAA 540 consensus_9987#3 TTTGGATTCACTGCCGGCCGGTATTTTAACG----------------------------- 192 consensus_9987#1 TTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAA 245 consensus_9987#2 TTTGGATTCACTGCCGGCCGGTATTTTAACGTCGCGTCAGGAATTCCAAAACGTAAATAA 218 ******************************* consensus_9987#0 TGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGT 600 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 TGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGT 305 consensus_9987#2 TGAGATTTGGTTGAAGGTAAACCAGGTGGAACGACAACGATCAAAATTGAATATGATGGT 278 consensus_9987#0 CTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTACAATATGGAGA 660 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 CTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATTTCACTACAATATGGAGA 365 consensus_9987#2 CTGGACACCAGCAGAGTTAATATCGATAATTACCAAAAGAATT----------------- 321 consensus_9987#0 CCTAATTNTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGA 720 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 CCTAATTTTAACCGGTACACCTGCTGGTGTAGGACCTCTGAGATCTTGTGATGAAATCGA 425 consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 AGCTGGATTAGATGATTTATGNTTCTATAAATTTAGCGTAGAATGACTATATTTTTACTG 780 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 AGCTGGATTAGATGATTTATGTTCTATAAAATTTAGCGTAGAATGACTATATTTTTACTG 485 consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 AAAGTTGATGTCTTCGTAAACTA--CTTATGCTNCACTG---GTGTCGCAGACATTAAAC 835 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 AAGTTGATTGTCTTCGTAAAACTACTTCATGCTTCACTGTGTGTTCGCAAGACATTAAAA 545 consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 TGNNTACGCAC---TTNACATNAGGNNTGTACTGNNGTAGATATA----CTTNGTCACTG 888 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 CTGTTTAACGCACCTTTACATTATGGTTGTTACTGTGTTAAGATTATACCTTTGTCACTG 605 consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 GAACGTCTTTCACTGGGNATATCAGGTCCGACTAGTCACACTTG---------------- 932 consensus_9987#3 ------------------------------------------------------------ consensus_9987#1 GAAAACGTCTTTTCAGCTGTGGTATTATCAGTGTCCCGACTAAGTACACTTGTTTACAGC 665 consensus_9987#2 ------------------------------------------------------------ consensus_9987#0 ----------------- consensus_9987#3 ----------------- consensus_9987#1 TAAAAAAAAAAAAAAAA 682 consensus_9987#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||