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Schistosoma mansoni
cluster # 9988 cluster # 9988       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9988#0 length = 823 sequences # 7  
consensus_9988#1 length = 341 sequences # 4  
consensus_9988#2 length = 301 sequences # 1  

consensusID : consensus_9988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 823
fasta sequence
                              [ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCACCACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTCACTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCC---TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACA-TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA-AGTAGTCG-ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA-AGTGG-GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA]

[+] EMBL CD086628             [ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCACCACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTCACTCACTTCAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD086610             [       CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCCGTCAAGGCTTCCTCATCATCATTGCATCCACTCACCTATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACATTTCG TGTAACAGACAACTTCCACGTTTCACCTCGAATGTANGTGACGTGATCTGTGTGTGGATGCA                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD113452             [                                                                                                                                                                                                                                                                  TGTCTACCGGTCAAGGCTTCC   TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACA TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTCAGTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGT                                                                                                                                                                          ]
[-] EMBL CD113567             [                                                                                                                                                                                                                                                                   GTCTACCGGTCAAGGCTTCA   TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTATACACACA TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTCAGTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCATAACTGAAAGCCCGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAATAGTAGTCGAATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGGAGAGAGAGTGGTGAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTG                                                                                                                                                                         ]
[+] EMBL CD087665             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA]
[+] EMBL CD087622             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGCTCCAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTCGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAATGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTACGGGATA]
[+] EMBL CD087650             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGCCCAATGATCCACTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGATGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA]


>consensus_9988#0 ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCACCACACACTATG CCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTCACTCACTTCAA CACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTC ACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTAC ACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCACTCACC CATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACATTCGTTGTAAC AGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCA GAGTCGGTGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGC CTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGC TGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAG AAGTGGGAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGG ATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTG GTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGG AAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA



consensusID : consensus_9988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 341
fasta sequence
                              [TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC]

[+] EMBL CD086561             [TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC]
[+] EMBL CD086577             [                 ACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATGGGACTCAACCAAACTTCCACAAACACAGTCACT                                                                                                                                                                                                                      ]
[+] EMBL CD086585             [                  CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACGCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCGCACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAAGCTTCCTCATCATTGCATCCACTCACC                              ]
[+] EMBL CD086645             [                  CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCAC                                   ]


>consensus_9988#1 TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCAC CACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACAC AGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCAC GGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACC CTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGC ATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC



consensusID : consensus_9988#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence
                              [GTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAACTTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGGGTGTGTCAGTACTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGACTCGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTGAGTGAGAGAGTGACGAGTGTGTGTGTGTGTGATGCG]

[-] EMBL CD166835             [GTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAACTTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGGGTGTGTCAGTACTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGACTCGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTGAGTGAGAGAGTGACGAGTGTGTGTGTGTGTGATGCG]


>consensus_9988#2 GTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAAC TTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGGGTGTGTCAGTACTGTTGGAAA GTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGAAGTGGGAG ATGTTGGTGCGTGAAACGGGACTCGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTG CAGTGGACTACGAGTGGACAACGTGAGTGAGAGAGTGACGAGTGTGTGTGTGTGTGATGC G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9988#0      -----------ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCAC 49
consensus_9988#1      TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCAC 60
consensus_9988#2      --------------GTCAAATGAT----CCAGTGTATTTTGGTCTTGTCCATCCGCCTAA 42
                                    **** *  **    **     *   *   * *   **  * *  * 

consensus_9988#0      CACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTC 109
consensus_9988#1      CACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACAC 120
consensus_9988#2      CTGAAAGCCTGTCGCAACTTTCGAATGGTGCAC----ATTGTGCAAATGTGTG-AATTGT 97
                      *  * *   *  *  *** * *     ** **      *    ****  *    **    

consensus_9988#0      ACTCACTTCAACACTCAATCATACATCCACTCACTC-CACTCCACTAATACCACACATC- 167
consensus_9988#1      AGTCACTTCAACACTCAATCATACATCCACTCACTC-CACTCCACTAATACCACACATC- 178
consensus_9988#2      GGGTGTGTCAGTACT--GTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCG 155
                             ***  ***   *   * *       * *      * * ** *  *    * * 

consensus_9988#0      ACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCA 227
consensus_9988#1      ACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCA 238
consensus_9988#2      ATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGAC-TCGATGCGACAT 214
                      * **  **         **   ** **     ***    *  *  ** ***      *  

consensus_9988#0      CCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATT 287
consensus_9988#1      CCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATT 298
consensus_9988#2      TTGTTTGTAGTGGAGTGGATACAGTG-CAGTGGACTACGAGT--GGACAACGTGAGTGAG 271
                         *   *  *  * ** * *   **  * * * ****  **   * *  * * *     

consensus_9988#0      GCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACA 347
consensus_9988#1      GCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC----------------- 341
consensus_9988#2      AGAGTGACGAGTGTGTGTGTGTGTGATGCG------------------------------ 301
                        *   **       * ***  ** *                                  

consensus_9988#0      CATTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGT 407
consensus_9988#1      ------------------------------------------------------------
consensus_9988#2      ------------------------------------------------------------
                                                                                  

consensus_9988#0      GTGGATGCATTCAGAGTCGGTGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCG 467
consensus_9988#1      ------------------------------------------------------------
consensus_9988#2      ------------------------------------------------------------
                                                                                  

consensus_9988#0      CCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTG 527
consensus_9988#1      ------------------------------------------------------------
consensus_9988#2      ------------------------------------------------------------
                                                                                  

consensus_9988#0      AGTGTGTCAGTGCTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATG 587
consensus_9988#1      ------------------------------------------------------------
consensus_9988#2      ------------------------------------------------------------
                                                                                  

consensus_9988#0      GGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTT 647
consensus_9988#1      ------------------------------------------------------------
consensus_9988#2      ------------------------------------------------------------
                                                                                  

consensus_9988#0      TGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGC 707
consensus_9988#1      ------------------------------------------------------------
consensus_9988#2      ------------------------------------------------------------
                                                                                  

consensus_9988#0      TCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTG 767
consensus_9988#1      ------------------------------------------------------------
consensus_9988#2      ------------------------------------------------------------
                                                                                  

consensus_9988#0      ACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA 823
consensus_9988#1      --------------------------------------------------------
consensus_9988#2      --------------------------------------------------------
                                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)