These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 823 fasta sequence [ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCACCACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTCACTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCC---TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACA-TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA-AGTAGTCG-ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA-AGTGG-GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA] [+] EMBL CD086628 [ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCACCACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTCACTCACTTCAACAC ] [+] EMBL CD086610 [ CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCCGTCAAGGCTTCCTCATCATCATTGCATCCACTCACCTATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACATTTCG TGTAACAGACAACTTCCACGTTTCACCTCGAATGTANGTGACGTGATCTGTGTGTGGATGCA ] [+] EMBL CD113452 [ TGTCTACCGGTCAAGGCTTCC TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACA TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTCAGTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGT ] [-] EMBL CD113567 [ GTCTACCGGTCAAGGCTTCA TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTATACACACA TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTCAGTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCATAACTGAAAGCCCGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAATAGTAGTCGAATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGGAGAGAGAGTGGTGAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTG ] [+] EMBL CD087665 [ TGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA] [+] EMBL CD087622 [ TGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGCTCCAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTCGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAATGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTACGGGATA] [+] EMBL CD087650 [ TGTGCCCAATGATCCACTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGATGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA] consensusID : consensus_9988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 341 fasta sequence [TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC] [+] EMBL CD086561 [TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC] [+] EMBL CD086577 [ ACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATGGGACTCAACCAAACTTCCACAAACACAGTCACT ] [+] EMBL CD086585 [ CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACGCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCGCACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAAGCTTCCTCATCATTGCATCCACTCACC ] [+] EMBL CD086645 [ CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCAC ] consensusID : consensus_9988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAACTTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGGGTGTGTCAGTACTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGACTCGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTGAGTGAGAGAGTGACGAGTGTGTGTGTGTGTGATGCG] [-] EMBL CD166835 [GTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAACTTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGGGTGTGTCAGTACTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGACTCGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTGAGTGAGAGAGTGACGAGTGTGTGTGTGTGTGATGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9988#0 -----------ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCAC 49 consensus_9988#1 TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCAC 60 consensus_9988#2 --------------GTCAAATGAT----CCAGTGTATTTTGGTCTTGTCCATCCGCCTAA 42 **** * ** ** * * * * ** * * * consensus_9988#0 CACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTC 109 consensus_9988#1 CACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACAC 120 consensus_9988#2 CTGAAAGCCTGTCGCAACTTTCGAATGGTGCAC----ATTGTGCAAATGTGTG-AATTGT 97 * * * * * *** * * ** ** * **** * ** consensus_9988#0 ACTCACTTCAACACTCAATCATACATCCACTCACTC-CACTCCACTAATACCACACATC- 167 consensus_9988#1 AGTCACTTCAACACTCAATCATACATCCACTCACTC-CACTCCACTAATACCACACATC- 178 consensus_9988#2 GGGTGTGTCAGTACT--GTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCG 155 *** *** * * * * * * * ** * * * * consensus_9988#0 ACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCA 227 consensus_9988#1 ACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCA 238 consensus_9988#2 ATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGAC-TCGATGCGACAT 214 * ** ** ** ** ** *** * * ** *** * consensus_9988#0 CCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATT 287 consensus_9988#1 CCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATT 298 consensus_9988#2 TTGTTTGTAGTGGAGTGGATACAGTG-CAGTGGACTACGAGT--GGACAACGTGAGTGAG 271 * * * * ** * * ** * * * **** ** * * * * * consensus_9988#0 GCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACA 347 consensus_9988#1 GCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC----------------- 341 consensus_9988#2 AGAGTGACGAGTGTGTGTGTGTGTGATGCG------------------------------ 301 * ** * *** ** * consensus_9988#0 CATTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGT 407 consensus_9988#1 ------------------------------------------------------------ consensus_9988#2 ------------------------------------------------------------ consensus_9988#0 GTGGATGCATTCAGAGTCGGTGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCG 467 consensus_9988#1 ------------------------------------------------------------ consensus_9988#2 ------------------------------------------------------------ consensus_9988#0 CCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTG 527 consensus_9988#1 ------------------------------------------------------------ consensus_9988#2 ------------------------------------------------------------ consensus_9988#0 AGTGTGTCAGTGCTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATG 587 consensus_9988#1 ------------------------------------------------------------ consensus_9988#2 ------------------------------------------------------------ consensus_9988#0 GGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTT 647 consensus_9988#1 ------------------------------------------------------------ consensus_9988#2 ------------------------------------------------------------ consensus_9988#0 TGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGC 707 consensus_9988#1 ------------------------------------------------------------ consensus_9988#2 ------------------------------------------------------------ consensus_9988#0 TCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTG 767 consensus_9988#1 ------------------------------------------------------------ consensus_9988#2 ------------------------------------------------------------ consensus_9988#0 ACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA 823 consensus_9988#1 -------------------------------------------------------- consensus_9988#2 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||