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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 823 fasta sequence
[ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCACCACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTCACTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCC---TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACA-TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA-AGTAGTCG-ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA-AGTGG-GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA]
[+] EMBL CD086628 [ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCACCACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTCACTCACTTCAACAC ]
[+] EMBL CD086610 [ CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCCGTCAAGGCTTCCTCATCATCATTGCATCCACTCACCTATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACATTTCG TGTAACAGACAACTTCCACGTTTCACCTCGAATGTANGTGACGTGATCTGTGTGTGGATGCA ]
[+] EMBL CD113452 [ TGTCTACCGGTCAAGGCTTCC TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACACA TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTCAGTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGT ]
[-] EMBL CD113567 [ GTCTACCGGTCAAGGCTTCA TCATCATTGCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTATACACACA TTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGTGTGGATGCATTCAGAGTCGGTCAGTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCATAACTGAAAGCCCGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAATAGTAGTCGAATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGGAGAGAGAGTGGTGAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTG ]
[+] EMBL CD087665 [ TGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA]
[+] EMBL CD087622 [ TGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGCTCCAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTCGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAATGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTACGGGATA]
[+] EMBL CD087650 [ TGTGCCCAATGATCCACTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAATTTCGAATGATGCACATTGTGCAAATGTGTGAATTGTGAGTGTGTCAGTGCTGTTGGAA AGTAGTCG ATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGA AGTGG GAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGCTCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTGACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA]
consensusID : consensus_9988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 341 fasta sequence
[TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC]
[+] EMBL CD086561 [TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC]
[+] EMBL CD086577 [ ACACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATGGGACTCAACCAAACTTCCACAAACACAGTCACT ]
[+] EMBL CD086585 [ CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACGCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCGCACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAAGCTTCCTCATCATTGCATCCACTCACC ]
[+] EMBL CD086645 [ CACCATAACACCATAACACCCTACACATTCACACACACTCACCACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACACAGTCACTTCAACACTCAATCATACATCCACTCACTCCACTCCACTAATACCACACATCACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCACCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATTGCATCCAC ]
consensusID : consensus_9988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[GTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAACTTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGGGTGTGTCAGTACTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGACTCGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTGAGTGAGAGAGTGACGAGTGTGTGTGTGTGTGATGCG]
[-] EMBL CD166835 [GTCAAATGATCCAGTGTATTTTGGTCTTGTCCATCCGCCTAACTGAAAGCCTGTCGCAACTTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTGGGTGTGTCAGTACTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGACTCGATGCGACATTTGTTTGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTGAGTGAGAGAGTGACGAGTGTGTGTGTGTGTGATGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9988#0 -----------ATAGTCACACCATAACACCCTAACACCCTACACATTCACACACACTCAC 49
consensus_9988#1 TGCACTGACAGCTCGTCACACCATAACACCATAACACCCTACACATTCACACACACTCAC 60
consensus_9988#2 --------------GTCAAATGAT----CCAGTGTATTTTGGTCTTGTCCATCCGCCTAA 42
**** * ** ** * * * * ** * * *
consensus_9988#0 CACACACTATGCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACTC 109
consensus_9988#1 CACACACTATCCCCTAACATACACCCAGTACATCGGACTCAACCAAACTTCCACAAACAC 120
consensus_9988#2 CTGAAAGCCTGTCGCAACTTTCGAATGGTGCAC----ATTGTGCAAATGTGTG-AATTGT 97
* * * * * *** * * ** ** * **** * **
consensus_9988#0 ACTCACTTCAACACTCAATCATACATCCACTCACTC-CACTCCACTAATACCACACATC- 167
consensus_9988#1 AGTCACTTCAACACTCAATCATACATCCACTCACTC-CACTCCACTAATACCACACATC- 178
consensus_9988#2 GGGTGTGTCAGTACT--GTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCG 155
*** *** * * * * * * * ** * * * *
consensus_9988#0 ACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCA 227
consensus_9988#1 ACGGAGCATGCTCACACAGAACGACATCCACATGCCGACACTGTCACATCGCACTTTCCA 238
consensus_9988#2 ATGGGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGAC-TCGATGCGACAT 214
* ** ** ** ** ** *** * * ** *** *
consensus_9988#0 CCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATT 287
consensus_9988#1 CCCTCCATCTTACACTGCACAGCCTGATATTTGTCTACCGGTCAAGGCTTCCTCATCATT 298
consensus_9988#2 TTGTTTGTAGTGGAGTGGATACAGTG-CAGTGGACTACGAGT--GGACAACGTGAGTGAG 271
* * * * ** * * ** * * * **** ** * * * * *
consensus_9988#0 GCATCCACTCACCCATTTGTCAGTCATTGTTCACTCTCTTCAAACACACACTTACACACA 347
consensus_9988#1 GCATCCACTCACCTATTTGTCAGTCAGGTTTCCCGGTCAGTGC----------------- 341
consensus_9988#2 AGAGTGACGAGTGTGTGTGTGTGTGATGCG------------------------------ 301
* ** * *** ** *
consensus_9988#0 CATTCGTTGTAACAGACAACTTCCACGTTTCAGCTCGAATGTAGGTGACGTGATCTGTGT 407
consensus_9988#1 ------------------------------------------------------------
consensus_9988#2 ------------------------------------------------------------
consensus_9988#0 GTGGATGCATTCAGAGTCGGTGTGCCCAATGATCCAGTGTATTTTGGTCTTGTCCATCCG 467
consensus_9988#1 ------------------------------------------------------------
consensus_9988#2 ------------------------------------------------------------
consensus_9988#0 CCTAACTGAAAGCCTGTCGCAATTTCGAATGGTGCACATTGTGCAAATGTGTGAATTGTG 527
consensus_9988#1 ------------------------------------------------------------
consensus_9988#2 ------------------------------------------------------------
consensus_9988#0 AGTGTGTCAGTGCTGTTGGAAAGTAGTCGATTGGTGAGCGAATAGTTTCGGTTAGCGATG 587
consensus_9988#1 ------------------------------------------------------------
consensus_9988#2 ------------------------------------------------------------
consensus_9988#0 GGACAGTGAAGAGAAGTGGGAGATGTTGGTGCGTGAAACGGGATTGATGCGACATTTGTT 647
consensus_9988#1 ------------------------------------------------------------
consensus_9988#2 ------------------------------------------------------------
consensus_9988#0 TGTAGTGGAGTGGATACAGTGCAGTGGACTACGAGTGGACAACGTTCTGTGTGAGCATGC 707
consensus_9988#1 ------------------------------------------------------------
consensus_9988#2 ------------------------------------------------------------
consensus_9988#0 TCCGTGATGTGTGGTATTAGTGGAGTGGAGTGAGAGGATGTATGATTGAGTGTTGAAGTG 767
consensus_9988#1 ------------------------------------------------------------
consensus_9988#2 ------------------------------------------------------------
consensus_9988#0 ACTGTGTTTGTGGAAGTTTGGTTGAGTCCGATGTACTGGGTGTATGTTAGGGGATA 823
consensus_9988#1 --------------------------------------------------------
consensus_9988#2 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||