These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 909 fasta sequence [AACCACAATCTCAGCCTTCATATTCTTCTCAGTCAATGCAGAGTATGAATCAACCACCATTACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGCGTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCCACCACCCAGTCATCGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATTACATTCTCAACAGCCATATCAAAATGGACCAGTATCCAGACAACCACAGTTTTCTCAAAGTATAAATGCAGATAGATTACCTAGTCCTATCGAGGTTATTGAGAGCAATCGGGCTCAATGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACTGACTTTATATCACGTGACCAGGGTACATGTGCACCTTGTTCCATCCGATCTTCACTATACTCTG-TTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTTTAACTGAAGTAGCCGCTGAATATTTTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCATAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATAGCAAATACAAGCAGTTACCTTTACCTCCAGCCATCATATTTCTACTAGATGTATCTCAATCTGCTATACGTTCAGGTTTAGTACAGCTAT] [-] EMBL CD168294 [AACCACAATCTCAGCCTTCATATTCTTCTCAGTCAATGCAGAGTATGAATCAACCACCATTACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAGCGTCCTCAGCAGCC ] [+] EMBL CD186312 [ tTATTCTGCTCAGTCAATGCAGAGTATGAATCAACCACCATTACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGCGTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCCACCACCCAGTCATCGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATTACATTCTCAACAGCCATATCAAAATGGACCAGTATCCAGACAACCACAGTTTTCTCAAAGTATAAATGCAGATAGATTACCTAGTCCTATCGAGGTTATTGAGAGCAATCGGGCTCAATGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACTGACTTTATATCACGTGACCAGGGTACATGTGCACCTTG ] [+] EMBL CD164113 [ cCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGCGTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCCACCACCCAGTTATCGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATTACATTCTCAACAGCCATATCAAA ] [-] EMBL CD126611 [ TGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACTGACTTTATATCACGTGACCAGGGTACATGTGCACCTTGTTCCATCCGATCTTCACTATACTCTG TTCCGAATACATCAGATCTCCTTAAAACTGTTGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCC ATGTCCAC TGTAATGG TTAACTGAAGTgcactcc ] [+] EMBL CD126620 [ ATCTTCACTATACTCTGTTTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTTTAACTGAAGTTGCCGCTGAATATTTTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCAAAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAA ] [+] EMBL CD158125 [ TATACTCTG TTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACGAGATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGACGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTT ] [+] EMBL BG931360 [ TCCAATGTCCACGGTGTAATGGTCTAACTGAAGTAGCCGCTGAATATTTTGCTCATGTAAATCATACTGTACGTCGAGTTGATGCAGGTCATAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATAGCAAATACAAGCAGTTACCTTTACCTCCAGCCAT ] [+] EMBL BG931335 [ TCCAATGTCCACTTTGTAATGGTCTAACTGAAGTAGCCGCTGAATATATTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCATAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATCGCAAAAACAACCAGTTACCTTTACCTCCAGCCATCATATTTCTACTAGATGTATCTCAATCTGCTATACGTTCAGGTTTAGTACAGCTAT] consensusID : consensus_9993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence [TTTTTTTTCTTCGGATGCCACCAATGCCTCCGGGACCTTAAAGAGTTTTTACCACCCAGTTATGGACAGCCTCACCCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATCATCAGATATGGCTAATCCAATTCGATTGGGATTTATTACATGTGATCATCAACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAATCAGCAGATCAGAACACTTATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTACAGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTTTATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTCGAAGGCTTCTTGATACCACCTGACCCTGTTGTCATTTCTAGTATCTTGGAAATGATACCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTATTAGGCCCAGCTATTCAATCTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTGGAAAATTATTTGTGATA-ATGCTCCTCT-NCATTTTGGTGAAGCACCGGGTAAATTGAAAAATCGGTTATGATGTTGGAAGGCCAGG] [-] EMBL CD067942 [TTTTTTTTCTTCGGATGCCACCAATGCCTCCGGGACCTTAAAGAGTTTTTACCACCCAGTTATGGACAGCCTCACCCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATCATCAGATATGGCTAATCCAATTCGATTGGGATTTATTACATGTGATCATCAACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAATCAGCAGATCAGAACACTTATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTACAGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTTTATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTCGAAGGCTTCTTGATACCACCTGACCCTGTTGTCATTTCTAGTATCTTGGAAATGATACCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTATTAGGCCCAGCTATTCAATCTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTGGAAAATTATTTGTGATA ATGCTCCTCT NCATTTTGGTGAAGCACCGG ] [-] EMBL CD067812 [ tcTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAG TTCTACCACCCAGTTATCGACAGCCTCAACCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATCATCAGATATGGCTAATCCAATTCGATTGGGATTTATTACATGTGATCATCAACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAATCAGCAGATCAGAACACTTATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTACAGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTTTATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTCGAAGGCTTCTTGATACCACCTGATCCTGTTGTCATTTCTAGTATCTTGGAAATGATACCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTATTAGGCCCAGCTATTCAATCTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTGGAAAATTATTTGTCATACATGCTAATCTAACA ATTGGTGAAGCACCGGGTAAATTGAAAAATCGGTTATGATGTTGGAAGGCCAGG] consensusID : consensus_9993#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [GTGGTGATATACGANTGGCACATCTCGATTTTTCAATTTACCCGGTGCTTCACCAATTGGTAGATTAGCATGTATGACAAATAATTTTCCAGAACGATTTGCAGCACGTAAAGCTTCCATTCCAGATTGAATAGCTGGGCCTAATACACTATCTGTAGGTTGTCTATTTAAAGCATTCTCTGTACAAAATTGAGTAGGTATCATTTCCAAGATACTAGAAATGACAACAG] [+] EMBL CD068144 [GTGGTGATATACGANTGGCACATCTCGATTTTTCAATTTACCCGGTGCTTCACCAATTGGTAGATTAGCATGTATGACAAATAATTTTCCAGAACGATTTGCAGCACGTAAAGCTTCCATTCCAGATTGAATAGCTGGGCCTAATACACTATCTGTAGGTTGTCTATTTAAAGCATTCTCTGTACAAAATTGAGTAGGTATCATTTCCAAGATACTAGAAATGACAACAG] consensusID : consensus_9993#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 132 fasta sequence [TCCAATGTCCACTGTGTAATGGTCTAACTGAAGTAGCCGCTGAATATACTGCTCATGTAAATCATACTGGACGTCGAGTTGATGCGCGTCATAAACCTTAACTATGTTGAGGCAGTTACGAATTGTTAGCAT] [+] EMBL BG931366 [TCCAATGTCCACTGTGTAATGGTCTAACTGAAGTAGCCGCTGAATATACTGCTCATGTAAATCATACTGGACGTCGAGTTGATGCGCGTCATAAACCTTAACTATGTTGAGGCAGTTACGAATTGTTAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9993#0 AACCACAATCTCAGCCTTCATATTCTTCTCAGTCAATGCAGAGTATGAATCAACCACCAT 60 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 ------------------------------------------------------------ consensus_9993#0 TACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGC 120 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 ---------------------------------------------------------TTT 3 consensus_9993#0 GTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCC-ACCACCCAGTCAT 179 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 TTTTTCTTCGGATGCCACCAATGCCTCCGGGACCTTAAAGAGTTTTTACCACCCAGTTAT 63 consensus_9993#0 CGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAAT 239 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 GGACAGCCTCACCCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAAT 123 consensus_9993#0 ACATTACATTCTCAACAGCCATATCAAAATGGACCAGTATCCAGACAACCACAGTTTTCT 299 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 ACATCA---TCAGATATGGCTAATCCAATTCGATTGGGATTT--ATTACATGTGATCATC 178 consensus_9993#0 CAAAGTATAAATGCAGATAGATTACCTAGTCCTATCGAGGTTATTGAGAGCAATCGGGCT 359 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 AACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAAT 238 consensus_9993#0 CAATGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACT 419 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 CAGCAGATCAGAACACTT---ATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTAC 295 consensus_9993#0 GACTTTATATCACGTGACCAGGGTACATGTGCACCTTGTTCCATCCGATCTTCACTATAC 479 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 AGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTT 355 consensus_9993#0 TCTGTTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATA 539 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 TATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTC 415 consensus_9993#0 TCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCA 599 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 --------------------GTGGTGATATACGANTGGCACATCTCGATTTTTCAATTTA 40 consensus_9993#1 GAAGGCTTCTTGATAC------CACCTGACCCTGTTGTCATTTCTAGTATCTTGGAAATG 469 consensus_9993#0 CAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATT 659 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 CCCGGTGCTTCACCAATTGGTAGAT-TAGCATGTATGACAAATAATTTTCCAGAACGATT 99 consensus_9993#1 ATA---CCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTA 526 consensus_9993#0 GACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTTTAACTGAAGTAGCCGCTGAA 719 consensus_9993#3 ----------------TCCAATGTCCACTGTGTAATGGTCTAACTGAAGTAGCCGCTGAA 44 consensus_9993#2 TGCAGCACGTAAAGCTTCCATT--CCAGATTG-AATAGCTGGGCCTAA-TACACTATCTG 155 consensus_9993#1 TTAGGC---CCAGCTATTCAAT--CTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTG 581 * ** * * ** ** * * * consensus_9993#0 TATT-TTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCATAGACCTGAACT 778 consensus_9993#3 TATA-CTGCTCATGTAAATCATACTGGACGTCGAGTTGATGCGCGTCATAAACCTTAACT 103 consensus_9993#2 TAGG-TTGTCTATTTAAAGCATTCTCTGTACAAAATTGA-GTAGGTATCATTTCCAAGAT 213 consensus_9993#1 GAAAATTATTTGTGATAATGCTCCTCTNCATTTTGGTGAAGCACCGGGTAAATTGAAAAA 641 * * * * * ** *** * * * consensus_9993#0 ATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATAGCAAATACAAGCAGTTACC 838 consensus_9993#3 ATGTTGAGGCAGTTACGAATTGTTAGCAT------------------------------- 132 consensus_9993#2 AC-TAGAAATGACAACAG------------------------------------------ 230 consensus_9993#1 TCGGTTATGATGTTGGAAGGCCAGG----------------------------------- 666 * consensus_9993#0 TTTACCTCCAGCCATCATATTTCTACTAGATGTATCTCAATCTGCTATACGTTCAGGTTT 898 consensus_9993#3 ------------------------------------------------------------ consensus_9993#2 ------------------------------------------------------------ consensus_9993#1 ------------------------------------------------------------ consensus_9993#0 AGTACAGCTAT 909 consensus_9993#3 ----------- consensus_9993#2 ----------- consensus_9993#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||