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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 909 fasta sequence
[AACCACAATCTCAGCCTTCATATTCTTCTCAGTCAATGCAGAGTATGAATCAACCACCATTACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGCGTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCCACCACCCAGTCATCGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATTACATTCTCAACAGCCATATCAAAATGGACCAGTATCCAGACAACCACAGTTTTCTCAAAGTATAAATGCAGATAGATTACCTAGTCCTATCGAGGTTATTGAGAGCAATCGGGCTCAATGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACTGACTTTATATCACGTGACCAGGGTACATGTGCACCTTGTTCCATCCGATCTTCACTATACTCTG-TTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTTTAACTGAAGTAGCCGCTGAATATTTTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCATAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATAGCAAATACAAGCAGTTACCTTTACCTCCAGCCATCATATTTCTACTAGATGTATCTCAATCTGCTATACGTTCAGGTTTAGTACAGCTAT]
[-] EMBL CD168294 [AACCACAATCTCAGCCTTCATATTCTTCTCAGTCAATGCAGAGTATGAATCAACCACCATTACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAGCGTCCTCAGCAGCC ]
[+] EMBL CD186312 [ tTATTCTGCTCAGTCAATGCAGAGTATGAATCAACCACCATTACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGCGTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCCACCACCCAGTCATCGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATTACATTCTCAACAGCCATATCAAAATGGACCAGTATCCAGACAACCACAGTTTTCTCAAAGTATAAATGCAGATAGATTACCTAGTCCTATCGAGGTTATTGAGAGCAATCGGGCTCAATGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACTGACTTTATATCACGTGACCAGGGTACATGTGCACCTTG ]
[+] EMBL CD164113 [ cCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGCGTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCCACCACCCAGTTATCGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATTACATTCTCAACAGCCATATCAAA ]
[-] EMBL CD126611 [ TGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACTGACTTTATATCACGTGACCAGGGTACATGTGCACCTTGTTCCATCCGATCTTCACTATACTCTG TTCCGAATACATCAGATCTCCTTAAAACTGTTGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCC ATGTCCAC TGTAATGG TTAACTGAAGTgcactcc ]
[+] EMBL CD126620 [ ATCTTCACTATACTCTGTTTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTTTAACTGAAGTTGCCGCTGAATATTTTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCAAAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAA ]
[+] EMBL CD158125 [ TATACTCTG TTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATATCTCCATTCGCTGTACGAGATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCACAAGGTCCAGTTCGATGTGTTCGACGTAAAGCCTACATGAATCCCTTCATGAATTTTATTGACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTT ]
[+] EMBL BG931360 [ TCCAATGTCCACGGTGTAATGGTCTAACTGAAGTAGCCGCTGAATATTTTGCTCATGTAAATCATACTGTACGTCGAGTTGATGCAGGTCATAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATAGCAAATACAAGCAGTTACCTTTACCTCCAGCCAT ]
[+] EMBL BG931335 [ TCCAATGTCCACTTTGTAATGGTCTAACTGAAGTAGCCGCTGAATATATTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCATAGACCTGAACTATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATCGCAAAAACAACCAGTTACCTTTACCTCCAGCCATCATATTTCTACTAGATGTATCTCAATCTGCTATACGTTCAGGTTTAGTACAGCTAT]
consensusID : consensus_9993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence
[TTTTTTTTCTTCGGATGCCACCAATGCCTCCGGGACCTTAAAGAGTTTTTACCACCCAGTTATGGACAGCCTCACCCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATCATCAGATATGGCTAATCCAATTCGATTGGGATTTATTACATGTGATCATCAACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAATCAGCAGATCAGAACACTTATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTACAGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTTTATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTCGAAGGCTTCTTGATACCACCTGACCCTGTTGTCATTTCTAGTATCTTGGAAATGATACCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTATTAGGCCCAGCTATTCAATCTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTGGAAAATTATTTGTGATA-ATGCTCCTCT-NCATTTTGGTGAAGCACCGGGTAAATTGAAAAATCGGTTATGATGTTGGAAGGCCAGG]
[-] EMBL CD067942 [TTTTTTTTCTTCGGATGCCACCAATGCCTCCGGGACCTTAAAGAGTTTTTACCACCCAGTTATGGACAGCCTCACCCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATCATCAGATATGGCTAATCCAATTCGATTGGGATTTATTACATGTGATCATCAACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAATCAGCAGATCAGAACACTTATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTACAGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTTTATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTCGAAGGCTTCTTGATACCACCTGACCCTGTTGTCATTTCTAGTATCTTGGAAATGATACCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTATTAGGCCCAGCTATTCAATCTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTGGAAAATTATTTGTGATA ATGCTCCTCT NCATTTTGGTGAAGCACCGG ]
[-] EMBL CD067812 [ tcTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAG TTCTACCACCCAGTTATCGACAGCCTCAACCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAATACATCATCAGATATGGCTAATCCAATTCGATTGGGATTTATTACATGTGATCATCAACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAATCAGCAGATCAGAACACTTATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTACAGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTTTATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTCGAAGGCTTCTTGATACCACCTGATCCTGTTGTCATTTCTAGTATCTTGGAAATGATACCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTATTAGGCCCAGCTATTCAATCTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTGGAAAATTATTTGTCATACATGCTAATCTAACA ATTGGTGAAGCACCGGGTAAATTGAAAAATCGGTTATGATGTTGGAAGGCCAGG]
consensusID : consensus_9993#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence
[GTGGTGATATACGANTGGCACATCTCGATTTTTCAATTTACCCGGTGCTTCACCAATTGGTAGATTAGCATGTATGACAAATAATTTTCCAGAACGATTTGCAGCACGTAAAGCTTCCATTCCAGATTGAATAGCTGGGCCTAATACACTATCTGTAGGTTGTCTATTTAAAGCATTCTCTGTACAAAATTGAGTAGGTATCATTTCCAAGATACTAGAAATGACAACAG]
[+] EMBL CD068144 [GTGGTGATATACGANTGGCACATCTCGATTTTTCAATTTACCCGGTGCTTCACCAATTGGTAGATTAGCATGTATGACAAATAATTTTCCAGAACGATTTGCAGCACGTAAAGCTTCCATTCCAGATTGAATAGCTGGGCCTAATACACTATCTGTAGGTTGTCTATTTAAAGCATTCTCTGTACAAAATTGAGTAGGTATCATTTCCAAGATACTAGAAATGACAACAG]
consensusID : consensus_9993#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 132 fasta sequence
[TCCAATGTCCACTGTGTAATGGTCTAACTGAAGTAGCCGCTGAATATACTGCTCATGTAAATCATACTGGACGTCGAGTTGATGCGCGTCATAAACCTTAACTATGTTGAGGCAGTTACGAATTGTTAGCAT]
[+] EMBL BG931366 [TCCAATGTCCACTGTGTAATGGTCTAACTGAAGTAGCCGCTGAATATACTGCTCATGTAAATCATACTGGACGTCGAGTTGATGCGCGTCATAAACCTTAACTATGTTGAGGCAGTTACGAATTGTTAGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9993#0 AACCACAATCTCAGCCTTCATATTCTTCTCAGTCAATGCAGAGTATGAATCAACCACCAT 60
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 ------------------------------------------------------------
consensus_9993#0 TACCACCCATGCCTCCTGTCCCAAACCATCAGGATTTCGTCCAACGTCCTCAGCAGCCGC 120
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 ---------------------------------------------------------TTT 3
consensus_9993#0 GTCTTCCTCCGATGCCACCAATGCCTCCGGGACCTGAAGGAGTTCC-ACCACCCAGTCAT 179
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 TTTTTCTTCGGATGCCACCAATGCCTCCGGGACCTTAAAGAGTTTTTACCACCCAGTTAT 63
consensus_9993#0 CGACAGCCTCAACCTCCAGGTCCATTTCCATTGTCAAATGGTGCCAACAGCCAGATAAAT 239
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 GGACAGCCTCACCCTCCAGGTCCGTTTCCATTGTCAAATGGTGCCAACAGCCAGATAAAT 123
consensus_9993#0 ACATTACATTCTCAACAGCCATATCAAAATGGACCAGTATCCAGACAACCACAGTTTTCT 299
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 ACATCA---TCAGATATGGCTAATCCAATTCGATTGGGATTT--ATTACATGTGATCATC 178
consensus_9993#0 CAAAGTATAAATGCAGATAGATTACCTAGTCCTATCGAGGTTATTGAGAGCAATCGGGCT 359
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 AACTTCACTTCTATACTGTACCTCGTGAGTCGTCATCATCCGCTCAACAAACATCTGAAT 238
consensus_9993#0 CAATGTACTGGACCTTTTTATACAGGACAACGAGGTGTTGTGCCTCCTCTAGTCACAACT 419
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 CAGCAGATCAGAACACTT---ATAACGTTTCCCAATCTGCTATACGTTCAGGTTTGGTAC 295
consensus_9993#0 GACTTTATATCACGTGACCAGGGTACATGTGCACCTTGTTCCATCCGATCTTCACTATAC 479
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 AGCTATTCTGCTCCCAATTCGTAGAACGTATTCTACCAAATTTACCTAGGGAAAAGTTTT 355
consensus_9993#0 TCTGTTCCGAATACATCAGATCTCCTTAAAACTGTGGGAATCCCTTTTTCACTTACAATA 539
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 TATGGTAAACCTCAAATGTACATTGTAGCGGATATTGAAGATGTGTTTGTGCCTACAGTC 415
consensus_9993#0 TCTCCATTCGCTGTACAACATACAGAAGATATGAATATTGTGATTAGCGATATGGGTCCA 599
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 --------------------GTGGTGATATACGANTGGCACATCTCGATTTTTCAATTTA 40
consensus_9993#1 GAAGGCTTCTTGATAC------CACCTGACCCTGTTGTCATTTCTAGTATCTTGGAAATG 469
consensus_9993#0 CAAGGTCCAGTTCGATGTGTTCGATGTAAAGCCTACATGAATCCCTTCATGAATTTTATT 659
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 CCCGGTGCTTCACCAATTGGTAGAT-TAGCATGTATGACAAATAATTTTCCAGAACGATT 99
consensus_9993#1 ATA---CCTACTCAATTTTGTACAGAGAATGCTTTAAATAGACAACCTACAGATAGTGTA 526
consensus_9993#0 GACGGTGGTCGAAGGTTCCAATGTCCACTTTGTAATGGTTTAACTGAAGTAGCCGCTGAA 719
consensus_9993#3 ----------------TCCAATGTCCACTGTGTAATGGTCTAACTGAAGTAGCCGCTGAA 44
consensus_9993#2 TGCAGCACGTAAAGCTTCCATT--CCAGATTG-AATAGCTGGGCCTAA-TACACTATCTG 155
consensus_9993#1 TTAGGC---CCAGCTATTCAAT--CTGGAATGGAAGCTTTACGTGCTGCAAATCGTTCTG 581
* ** * * ** ** * * *
consensus_9993#0 TATT-TTGCTCATTTAGATCATACTGGACGTCGAGTTGATGCAGGTCATAGACCTGAACT 778
consensus_9993#3 TATA-CTGCTCATGTAAATCATACTGGACGTCGAGTTGATGCGCGTCATAAACCTTAACT 103
consensus_9993#2 TAGG-TTGTCTATTTAAAGCATTCTCTGTACAAAATTGA-GTAGGTATCATTTCCAAGAT 213
consensus_9993#1 GAAAATTATTTGTGATAATGCTCCTCTNCATTTTGGTGAAGCACCGGGTAAATTGAAAAA 641
* * * * * ** *** * * *
consensus_9993#0 ATGTTTAGGCAGTTACGAATTATTAGCAACAGCGGAATATAGCAAATACAAGCAGTTACC 838
consensus_9993#3 ATGTTGAGGCAGTTACGAATTGTTAGCAT------------------------------- 132
consensus_9993#2 AC-TAGAAATGACAACAG------------------------------------------ 230
consensus_9993#1 TCGGTTATGATGTTGGAAGGCCAGG----------------------------------- 666
*
consensus_9993#0 TTTACCTCCAGCCATCATATTTCTACTAGATGTATCTCAATCTGCTATACGTTCAGGTTT 898
consensus_9993#3 ------------------------------------------------------------
consensus_9993#2 ------------------------------------------------------------
consensus_9993#1 ------------------------------------------------------------
consensus_9993#0 AGTACAGCTAT 909
consensus_9993#3 -----------
consensus_9993#2 -----------
consensus_9993#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||