These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 652 fasta sequence [GAGCCATTAATTCGGCACGCAGGGCGGTAATCAACTGGTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACTCCTGGT] [+] EMBL CD081794 [GAGCCATTAATTCGGCACGCAGGGCGGTAATCAACTGGTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACTCC ] [+] EMBL AA559416 [ GGCGGTAATCAACT GTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTANACCATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCANAGACTTCATCTANAANACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACNATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGG ] [-] EMBL CD061017 [ GTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGTATGCAGAGACTTCATTTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCGTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATGTAGAGAAAAATACATAGAATTGTTCTGTTAAAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGCCCATTTTTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAG ] [-] EMBL CD075525 [ GAAAACCCCGTTCCTCCCCCTGAAGTGGTAATTAACGGCCTTAAAGCTTGCAAACGCCTTAACGATATTGCCCTGGCCATAAGGTTTGTTGAATTTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATTAAACAAAAGATTGAACCCCCAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATTATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACCTTGTATAATTTAAAGAAAAATACATAAAATTGTTTTGTTAAAAGTATTAAACCTTTATCACACAAAACCGATGTGGTTGTGATTTGTTATTAATTTCAAAATGACCATTTTTAGCATTTTTGTCAACGGATAGTAAAAACTGAATGTTTTAGGTCCTACTGAACAAAAACACTCCTGGT] [-] EMBL CD132781 [ TGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACA ] [-] EMBL SMAA40610 [ GTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGGAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATNTCTAGCATTTCTGTCAACGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACT ] consensusID : consensus_9999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 546 fasta sequence [GGTGCGTGGTCGTTCGGCGGTAATCAACTGT-T-AAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGAT] [+] EMBL CD084211 [ CGTGGTCGTTCGGCGGTAATCAACTGT T AAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATAGCCGATGTGGTTGTGAT] [+] EMBL AI975856 [ggtgatgatTCGTTCGGCGGTAATCAACTGTGTGAAAAGTTACCATAAAACTGTCCCATATATTTACTTTAGACCATGCGCAAACCATTCTACTAATCCACAATATAACAATGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAAAATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGAACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTATAATCTAGAGAAAAATACATAGAATT ] [+] EMBL CD138452 [ TCATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAA ] [-] EMBL CD138616 [ CATCTAGAAGACGCCGTTCCTCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGAT ] [-] EMBL CD138476 [ CATCTAGAAGACGCCGTTCCTCCCCCTGGAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGAT ] [-] EMBL CD138473 [ CATCTAGAAGACGCCGTTCCTCCCCCTGAAATGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCTGGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGAATGGATGAAACAAGAGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9999#0 GAGCCATTAATTCG-GCACGCAGGGCGGTAATCAACTGGTGTGAAAAGTTACCATAAAAC 59 consensus_9999#1 --------GGTGCGTGGTCGTTCGGCGGTAATCAACTG---TTAAAAGTTACCATAAAAC 49 * ** * ** *************** * ***************** consensus_9999#0 TGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAA 119 consensus_9999#1 TGTCCCATATATTTACTTTAGACTATGCGCAAACCATTCTACTAATCCACAATATAACAA 109 ************************************************************ consensus_9999#0 TGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAA 179 consensus_9999#1 TGCAACCGAGCCATATGAAGTATTCAAATCCCGTTTTGTGAATGCCTTTGATGATCCAAA 169 ************************************************************ consensus_9999#0 AATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCC 239 consensus_9999#1 AATTGACGGTTGGTGGGCCAGGACATGGATGCAGAGACTTCATCTAGAAGACGCCGTTCC 229 ************************************************************ consensus_9999#0 TCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCT 299 consensus_9999#1 TCCCCCTGAAGTGGTAATTAGCGGCCTTAAAGCTTGCAAACGCCTTAACGATATCGCCCT 289 ************************************************************ consensus_9999#0 GGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGA 359 consensus_9999#1 GGCCATAAGGTTTGTTGAATCTGTAAAATTTAAGTGCAAAGTTGCCAAAGGTGCTTGGGA 349 ************************************************************ consensus_9999#0 ATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGA 419 consensus_9999#1 ATGGATGAAACAAGAGATTGAACCCACAATGAAACAACTTGGTTTGCCAACTTTGGAGGA 409 ************************************************************ consensus_9999#0 ACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTAT 479 consensus_9999#1 ACTTGGATATGATACGCCTGAGTTGGCTGTAATTGACTATGACGACTGAAAACATTGTAT 469 ************************************************************ consensus_9999#0 AATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATA 539 consensus_9999#1 AATCTAGAGAAAAATACATAGAATTGTTCTGTTAGAAGTATTATACCTTTATCACACATA 529 ************************************************************ consensus_9999#0 GCCGATGTGGTTGTGATCTGTTATTAATCTCAATATGACCATTTCTAGCATTTCTGTCAA 599 consensus_9999#1 GCCGATGTGGTTGTGAT------------------------------------------- 546 ***************** consensus_9999#0 CGGATAGTAAGTACTGAATGTTTTAGCTCCTACTGAACAAATACACTCCTGGT 652 consensus_9999#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||