These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGAGCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGTTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTATTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATCAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACCACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCATGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGCAGCTTTGTCTTTTGGACTTCTTTAATA] [+] EMBL CA845059 [TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGAGCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGTTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTATTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATCAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACCACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCATGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGCAGCTTTGTCTTTTGGACTTCTTTAATA] consensusID : consensus_1007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 64 fasta sequence [TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACAATCA] [+] EMBL CA847068 [TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACAATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1007#0 TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGA 60 consensus_1007#1 ------------------------------------------------------------ consensus_1007#0 GCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTT-TAG 119 consensus_1007#1 --------TCTTCT-ATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAA 51 * **** * ** * * * *** **** **** ** ** * ** consensus_1007#0 TTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTA 179 consensus_1007#1 ACTTCCACAATCA----------------------------------------------- 64 ** * ** consensus_1007#0 TTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAAT 239 consensus_1007#1 ------------------------------------------------------------ consensus_1007#0 CAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACAC 299 consensus_1007#1 ------------------------------------------------------------ consensus_1007#0 CACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCA 359 consensus_1007#1 ------------------------------------------------------------ consensus_1007#0 TGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAG 419 consensus_1007#1 ------------------------------------------------------------ consensus_1007#0 CAGCTTTGTCTTTTGGACTTCTTTAATA 447 consensus_1007#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |