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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1007 cluster # 1007       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1007#0 length = 447 sequences # 1  
consensus_1007#1 length = 64 sequences # 1  

consensusID : consensus_1007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence
                              [TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGAGCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGTTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTATTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATCAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACCACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCATGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGCAGCTTTGTCTTTTGGACTTCTTTAATA]

[+] EMBL CA845059             [TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGAGCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGTTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTATTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATCAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACCACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCATGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGCAGCTTTGTCTTTTGGACTTCTTTAATA]


>consensus_1007#0 TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGA GCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGT TCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTAT TAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATC AGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACC ACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCAT GGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGC AGCTTTGTCTTTTGGACTTCTTTAATA



consensusID : consensus_1007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 64
fasta sequence
                              [TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACAATCA]

[+] EMBL CA847068             [TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACAATCA]


>consensus_1007#1 TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACA ATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1007#0      TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGA 60
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      GCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTT-TAG 119
consensus_1007#1      --------TCTTCT-ATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAA 51
                              * **** * **   *  * *  ***    **** ****  ** ** *  ** 

consensus_1007#0      TTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTA 179
consensus_1007#1      ACTTCCACAATCA----------------------------------------------- 64
                            ** * **                                               

consensus_1007#0      TTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAAT 239
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      CAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACAC 299
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      CACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCA 359
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      TGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAG 419
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      CAGCTTTGTCTTTTGGACTTCTTTAATA 447
consensus_1007#1      ----------------------------
                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)