cluster # 1012

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Takifugu rubripes
cluster # 1012 cluster # 1012 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1012#0 length = 503 sequences # 1

consensus_1012#1 length = 255 sequences # 1

consensusID : consensus_1012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [CTGAGCGGCTAGCAGCTGGGATCACCCATCCGGCTAACAGCCAAGTCCCCGCTGACATTCCTTTCTTATCCTGTCCTTTATCGTTTCCAGTGATGCGAAAGCGGAATAACTCACCGACTGAGCAGCCTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCACTGTCAGGGTAACTGCGGGGCCCTCAGCTGACGACCGGCAGGGCCCCGGAGCTGAGGTGCACGCCATGAAACCGTTCAGGAGGTTGACTCTCCTGGGGAGGCTGAAGAGGTTGATGCTGTGGCTGTTGGTGGTCTACGTCTCCGTCCCCTTTATTGTCAAACTGTGTCCCTCCATCCAGGCCAAACTCGTCTTCCTCAATTTTGTCAGGGTGCCCTACTTCATCGACCTGAAGAGGCCCCTGGACCTGGGTCTAAACCACACCCACAACCTCTACCTGGAGCCAGAGGTCGGGATCAAGATAGGAGTCTGGCACACAGTTCCAGCTCAC]

[+] EMBL FR0057810            [CTGAGCGGCTAGCAGCTGGGATCACCCATCCGGCTAACAGCCAAGTCCCCGCTGACATTCCTTTCTTATCCTGTCCTTTATCGTTTCCAGTGATGCGAAAGCGGAATAACTCACCGACTGAGCAGCCTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCACTGTCAGGGTAACTGCGGGGCCCTCAGCTGACGACCGGCAGGGCCCCGGAGCTGAGGTGCACGCCATGAAACCGTTCAGGAGGTTGACTCTCCTGGGGAGGCTGAAGAGGTTGATGCTGTGGCTGTTGGTGGTCTACGTCTCCGTCCCCTTTATTGTCAAACTGTGTCCCTCCATCCAGGCCAAACTCGTCTTCCTCAATTTTGTCAGGGTGCCCTACTTCATCGACCTGAAGAGGCCCCTGGACCTGGGTCTAAACCACACCCACAACCTCTACCTGGAGCCAGAGGTCGGGATCAAGATAGGAGTCTGGCACACAGTTCCAGCTCAC]




>consensus_1012#0
CTGAGCGGCTAGCAGCTGGGATCACCCATCCGGCTAACAGCCAAGTCCCCGCTGACATTC
CTTTCTTATCCTGTCCTTTATCGTTTCCAGTGATGCGAAAGCGGAATAACTCACCGACTG
AGCAGCCTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCACTGTCA
GGGTAACTGCGGGGCCCTCAGCTGACGACCGGCAGGGCCCCGGAGCTGAGGTGCACGCCA
TGAAACCGTTCAGGAGGTTGACTCTCCTGGGGAGGCTGAAGAGGTTGATGCTGTGGCTGT
TGGTGGTCTACGTCTCCGTCCCCTTTATTGTCAAACTGTGTCCCTCCATCCAGGCCAAAC
TCGTCTTCCTCAATTTTGTCAGGGTGCCCTACTTCATCGACCTGAAGAGGCCCCTGGACC
TGGGTCTAAACCACACCCACAACCTCTACCTGGAGCCAGAGGTCGGGATCAAGATAGGAG
TCTGGCACACAGTTCCAGCTCAC

consensusID : consensus_1012#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [GTTGATCGTGGAATCATATTATCGTCCTTGCTATTTCTGACGTTGGCCCAAATGCTGCATTCCTGGTAGCCAGGAAAAGACCGACCCCGACATGTGATGCGGAAAGCGGAATAACTCACCGACTGAACAGACTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCACTGTCAGGGGAACTGCGGGGCCCTCAGTTGACGACCGTCAGGGCCCCGGAGCTGGGGGGGACCGCATGAAACCGGT]

[+] EMBL FR0061616            [GTTGATCGTGGAATCATATTATCGTCCTTGCTATTTCTGACGTTGGCCCAAATGCTGCATTCCTGGTAGCCAGGAAAAGACCGACCCCGACATGTGATGCGGAAAGCGGAATAACTCACCGACTGAACAGACTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCACTGTCAGGGGAACTGCGGGGCCCTCAGTTGACGACCGTCAGGGCCCCGGAGCTGGGGGGGACCGCATGAAACCGGT]




>consensus_1012#1
GTTGATCGTGGAATCATATTATCGTCCTTGCTATTTCTGACGTTGGCCCAAATGCTGCAT
TCCTGGTAGCCAGGAAAAGACCGACCCCGACATGTGATGCGGAAAGCGGAATAACTCACC
GACTGAACAGACTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCAC
TGTCAGGGGAACTGCGGGGCCCTCAGTTGACGACCGTCAGGGCCCCGGAGCTGGGGGGGA
CCGCATGAAACCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1012#0      -CTGAGCGGCTAGCAGCTGGGATCACCCATCCGGCTAACAGCCAAGTCCCCGCTGACATT 59
consensus_1012#1      GTTGATCGTGGAATCA-TATTATCGTCCTTGCTATTTCTGACGTTGGCCCAAATGCTGCA 59
                        *** **   *     *   ***  ** * *   *     *   * ***   **     

consensus_1012#0      CCTTTCTTATCCTGTCCTTTATCGTTTCCA----GTGATGCG-AAAGCGGAATAACTCAC 114
consensus_1012#1      TTCCTGGTAGCCAGGAAAAGACCGACCCCGACATGTGATGCGGAAAGCGGAATAACTCAC 119
                          *  ** ** *      * **   **     ******** *****************

consensus_1012#0      CGACTGAGCAGCCTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCA 174
consensus_1012#1      CGACTGAACAGACTGATAGTGGTTCTTTGCTGGAGGACGACCCGGACTTGAAACAGCGCA 179
                      ******* *** ************************************************

consensus_1012#0      CTGTCAGGGTAACTGCGGGGCCCTCAGCTGACGACCGGCAGGGCCCCGGAGCTGAGGTGC 234
consensus_1012#1      CTGTCAGGGGAACTGCGGGGCCCTCAGTTGACGACCGTCAGGGCCCCGGAGCTGGGGGGG 239
                      ********* ***************** ********* **************** ** * 

consensus_1012#0      ACGCCATGAAACCGTTCAGGAGGTTGACTCTCCTGGGGAGGCTGAAGAGGTTGATGCTGT 294
consensus_1012#1      ACCGCATGAAACCGGT-------------------------------------------- 255
                      **  ********** *                                            

consensus_1012#0      GGCTGTTGGTGGTCTACGTCTCCGTCCCCTTTATTGTCAAACTGTGTCCCTCCATCCAGG 354
consensus_1012#1      ------------------------------------------------------------
                                                                                  

consensus_1012#0      CCAAACTCGTCTTCCTCAATTTTGTCAGGGTGCCCTACTTCATCGACCTGAAGAGGCCCC 414
consensus_1012#1      ------------------------------------------------------------
                                                                                  

consensus_1012#0      TGGACCTGGGTCTAAACCACACCCACAACCTCTACCTGGAGCCAGAGGTCGGGATCAAGA 474
consensus_1012#1      ------------------------------------------------------------
                                                                                  

consensus_1012#0      TAGGAGTCTGGCACACAGTTCCAGCTCAC 503
consensus_1012#1      -----------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)