These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGCTTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACCAAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAAACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTGGGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCTTGCCCCTGGCTTGGATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGGGCCGTGGCGCTCATACCCGTGGTCAGGATGGAGATGTCCACAAAGCCCGTTCTGGGGTCGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGGTCTCCACCTTCTCGGAGAAGCG] [+] EMBL CA332656 [TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGCTTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACCAAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAAACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTGGGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCTTGCCCCTGGCTTGGATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGGGCCGTGGCGCTCATACCCGTGGTCAGGATGGAGATGTCCACAAAGCCCGTTCTGGGGTCGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGGTCTCCACCTTCTCGGAGAAGCG] consensusID : consensus_103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [TTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATTCATGGGGGGGGTCCTGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGGGCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGGCC] [+] EMBL CA329277 [TTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATTCATGGGGGGGGTCCTGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGGGCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_103#0 TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGC 60 consensus_103#1 ------------------------------------------------------------ consensus_103#0 TTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACC 120 consensus_103#1 ------------------------------------------------------------ consensus_103#0 AAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAA 180 consensus_103#1 ------------------------------------------------------------ consensus_103#0 ACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTG 240 consensus_103#1 ------------------------------------------------------------ consensus_103#0 GGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGG 300 consensus_103#1 -----------------------------------------------TTTCCGGTGACGG 13 ************* consensus_103#0 TCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGG 360 consensus_103#1 TCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGG 73 ************************************************************ consensus_103#0 CGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCT 420 consensus_103#1 CGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATT-CATGGGGGGGGTCC 132 ******************** ******** ********** *** ***** ******* consensus_103#0 TGCCCCTGGCTTGG-ATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGG 479 consensus_103#1 TGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGG 192 ** *********** **** * ******** ******** ****** ** *** ** consensus_103#0 GCCGTGGCGCTCATA-CCCGTGGTCAGGATGGAGATGT-CCACAAAGCCCGTTCTGGGGT 537 consensus_103#1 GCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGG 252 **** ******* ** *** ** ** ***** ** * ** **** *** ** ***** consensus_103#0 CGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGG 597 consensus_103#1 CC---------------------------------------------------------- 254 * consensus_103#0 TCTCCACCTTCTCGGAGAAGCG 619 consensus_103#1 ---------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |