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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGCTTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACCAAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAAACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTGGGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCTTGCCCCTGGCTTGGATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGGGCCGTGGCGCTCATACCCGTGGTCAGGATGGAGATGTCCACAAAGCCCGTTCTGGGGTCGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGGTCTCCACCTTCTCGGAGAAGCG]
[+] EMBL CA332656 [TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGCTTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACCAAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAAACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTGGGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCTTGCCCCTGGCTTGGATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGGGCCGTGGCGCTCATACCCGTGGTCAGGATGGAGATGTCCACAAAGCCCGTTCTGGGGTCGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGGTCTCCACCTTCTCGGAGAAGCG]
consensusID : consensus_103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence
[TTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATTCATGGGGGGGGTCCTGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGGGCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGGCC]
[+] EMBL CA329277 [TTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATTCATGGGGGGGGTCCTGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGGGCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_103#0 TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGC 60
consensus_103#1 ------------------------------------------------------------
consensus_103#0 TTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACC 120
consensus_103#1 ------------------------------------------------------------
consensus_103#0 AAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAA 180
consensus_103#1 ------------------------------------------------------------
consensus_103#0 ACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTG 240
consensus_103#1 ------------------------------------------------------------
consensus_103#0 GGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGG 300
consensus_103#1 -----------------------------------------------TTTCCGGTGACGG 13
*************
consensus_103#0 TCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGG 360
consensus_103#1 TCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGG 73
************************************************************
consensus_103#0 CGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCT 420
consensus_103#1 CGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATT-CATGGGGGGGGTCC 132
******************** ******** ********** *** ***** *******
consensus_103#0 TGCCCCTGGCTTGG-ATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGG 479
consensus_103#1 TGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGG 192
** *********** **** * ******** ******** ****** ** *** **
consensus_103#0 GCCGTGGCGCTCATA-CCCGTGGTCAGGATGGAGATGT-CCACAAAGCCCGTTCTGGGGT 537
consensus_103#1 GCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGG 252
**** ******* ** *** ** ** ***** ** * ** **** *** ** *****
consensus_103#0 CGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGG 597
consensus_103#1 CC---------------------------------------------------------- 254
*
consensus_103#0 TCTCCACCTTCTCGGAGAAGCG 619
consensus_103#1 ----------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |