Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 103 cluster # 103       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_103#0 length = 619 sequences # 1  
consensus_103#1 length = 254 sequences # 1  

consensusID : consensus_103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence
                              [TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGCTTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACCAAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAAACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTGGGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCTTGCCCCTGGCTTGGATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGGGCCGTGGCGCTCATACCCGTGGTCAGGATGGAGATGTCCACAAAGCCCGTTCTGGGGTCGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGGTCTCCACCTTCTCGGAGAAGCG]

[+] EMBL CA332656             [TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGCTTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACCAAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAAACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTGGGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCTTGCCCCTGGCTTGGATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGGGCCGTGGCGCTCATACCCGTGGTCAGGATGGAGATGTCCACAAAGCCCGTTCTGGGGTCGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGGTCTCCACCTTCTCGGAGAAGCG]


>consensus_103#0 TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGC TTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACC AAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAA ACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTG GGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGG TCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGG CGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCT TGCCCCTGGCTTGGATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGGG CCGTGGCGCTCATACCCGTGGTCAGGATGGAGATGTCCACAAAGCCCGTTCTGGGGTCGG TGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGGTCT CCACCTTCTCGGAGAAGCG



consensusID : consensus_103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence
                              [TTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATTCATGGGGGGGGTCCTGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGGGCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGGCC]

[+] EMBL CA329277             [TTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATTCATGGGGGGGGTCCTGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGGGCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGGCC]


>consensus_103#1 TTTCCGGTGACGGTCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGC TCCTTGGTGATGGCGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATTCA TGGGGGGGGTCCTGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCC CAACCTTTGGGGGCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAAC CCCTTTTGGGGGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_103#0      TTGGACACTTTTATTTTCTTCTCCAACATTAATTAAGTCATCAAAAACCGCAACCTGGGC 60
consensus_103#1      ------------------------------------------------------------
                                                                                 

consensus_103#0      TTTAACAGCTAATAAACTTCAGGCGAGAGTTTTTAATCGTTTCACTTGATCAAAACAACC 120
consensus_103#1      ------------------------------------------------------------
                                                                                 

consensus_103#0      AAAGCTGGGTTCATTTTTAACATCTAATGAAGCACAACACAAAGTGCCGGAATTGTACAA 180
consensus_103#1      ------------------------------------------------------------
                                                                                 

consensus_103#0      ACGTATTTTACAGGATGAGAAAAGAAGAAAGAGGAGTAAATTTAAGACTGTACATAAGTG 240
consensus_103#1      ------------------------------------------------------------
                                                                                 

consensus_103#0      GGGTTTTTTTTGTTGTTTTGTTTGTTTAGGCGAGGAGACGGACGGTCTTTCCGGTGACGG 300
consensus_103#1      -----------------------------------------------TTTCCGGTGACGG 13
                                                                    *************

consensus_103#0      TCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGG 360
consensus_103#1      TCAGGAAGTCCTCGTCGGCCAGGGCTCGCAGCGCCTCGTCAAACAGCTCCTTGGTGATGG 73
                     ************************************************************

consensus_103#0      CGGTTTCAGACTGGCCCCTCAGGTCATCCAGCAGCTGCTGGTATTTCATGGTGGGGGTCT 420
consensus_103#1      CGGTTTCAGACTGGCCCCTCCAGTCATCCAACAGCTGCTGGGATT-CATGGGGGGGGTCC 132
                     ********************  ******** ********** *** ***** ******* 

consensus_103#0      TGCCCCTGGCTTGG-ATCAGCTTCTTCAGGGCCTGGGCCGCCTCCTCCCTACGCTTGCGG 479
consensus_103#1      TGGCCCTGGCTTGGGATCACTTCTTTCAGGGCTGGGGCCGCCCCCTCCCAACCTTTGGGG 192
                     ** *********** ****  *  ********  ******** ****** **  *** **

consensus_103#0      GCCGTGGCGCTCATA-CCCGTGGTCAGGATGGAGATGT-CCACAAAGCCCGTTCTGGGGT 537
consensus_103#1      GCCGGGGCGCTCCTAACCCCGGGGCACGATGGGGAAATGCCCCAAAACCCCTTTTGGGGG 252
                     **** ******* ** ***  ** ** ***** **  * ** **** *** ** ***** 

consensus_103#0      CGGTGGCCGACTGTTTGAGGGCCTCTCGGTGGAGCCTCTTGGCCTCCTCCACGTCGATGG 597
consensus_103#1      CC---------------------------------------------------------- 254
                     *                                                           

consensus_103#0      TCTCCACCTTCTCGGAGAAGCG 619
consensus_103#1      ----------------------
                                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)