These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1513 fasta sequence [ATACCAGAGGAAGCTCTACAAGGAACTGCTGGCTAACTACAACCGGCTGGAGAGGCCCGTTTTCAACGACTCAGCCCCCATCCTGGTGGAGCTGGGCCTCACCCTGCTGCAGATCATCGACGTGGATGAGAAGAACCAAGTGTTGATGACCAATGCATGGCTGCAGTTGTATTGGACAGACATCTACCTAACCTGGAATCCAGAAAGCTACCCTGGTGTCCAGAACCTCCGATTCCCTTCAGACCAGGTCTGGACCCCTGACATCCTGCTCTACAACAGTGCCGACGAGCGGTTTGACGCCACGTTCCACACTAACGTTCTGGTGAACGCGTCAGGCTACTGTCAGTACATCCCGCCAGGCATCCTGAAGAGCACCTGCTACATCGATGTGCGTTGGTTCCCGTTTGATGTCCAAAAATGTGACTTAAAATTCGGCTCCTGGACGCACAACGGCTGGCTGCTGGACCTCCAGATGCTGGACGTGGACACGTCTACATACATACCCAACGGGGAGTGGGACCTCGTGGGGGTGCCGGCCAAGCGTAACGAGCTCTACTACGACTGCTGTAAGGAGCCGTACCCCGATGTGACCTTCACAGTCACCATGCGCCGCAGGACGTTGTATTATGGCCTCAACCTGCTCATCCCCTGTGTGCTGATCTCTGGCTTGGCCCTGCTGGTCTTCTTGCTGCCCGCAGACTCTGGAGAGAAGATTTCTCTGGGCATCACTGTGCTGCTTTCGCTCACTGTCTTCATGCTTCTGGTAGCAGAGATCATGCCCGCCACGTCCGACTCTGTTCCACTCATCGCGCAGTACTTTGCCAGCACCATGATGATTGTGGGAATGTCTGTGGTGGTGACAGTGATCGTCCTGCAGTTTCACCATCACGACCCTCACGGAGGGAAGATGCCTAAATGGGTTCGTGTGATTTTGTTGAACTGGTGTGCCTGGTTCCTCCGAATGAAGCAACCCGGTGACGAGCGTAAGCGGCCGGGTTATAAAGCTCGCCACCTCTCCCAGCGTCACTCCAGCTCCAGCTCCATAGAGATGAGCGCCATGCCCAGCCTCAGCGTGCCCCTCGCTCAGACCTCTGGCCCATCGTGCCCAACAGGAACCTCCAACGGCTCCATGGGTTTTTACTTTAGCACCTACCACCCGACAGACAGCTCATCCTGTCCCCCTTCCAGTGACTCTGGGGTGGCACTTGGAGGACGCAACCACAGCTCCCCCAGCGAGGAGGCGGAGCCACCTGTCGGAGGCAGCGGCGGAAGCCTGGGAATGGGAGTGGGAAGGGTCAGCATCCCCCCACCAGAGATCATGTGCATCCTTGAGGAGGTGTCCTACATAGCCCAGAGGTTCCGGGACCAAGACGAGGCCGAGGCCATCTGCAGCGAGTGGAAGTTTGCGGCGGCGGTGGTGGACCGCCTCTGTCTGGTGGCCTTCTCCCTCTTCTCCATCATCTGCACCTTCACCATCCTCATGTCTGCGCCCAACTTCATAGAGGCCGTTTCA] [+] EMBL AY299466 [ATACCAGAGGAAGCTCTACAAGGAACTGCTGGCTAACTACAACCGGCTGGAGAGGCCCGTTTTCAACGACTCAGCCCCCATCCTGGTGGAGCTGGGCCTCACCCTGCTGCAGATCATCGACGTGGATGAGAAGAACCAAGTGTTGATGACCAATGCATGGCTGCAGTTGTATTGGACAGACATCTACCTAACCTGGAATCCAGAAAGCTACCCTGGTGTCCAGAACCTCCGATTCCCTTCAGACCAGGTCTGGACCCCTGACATCCTGCTCTACAACAGTGCCGACGAGCGGTTTGACGCCACGTTCCACACTAACGTTCTGGTGAACGCGTCAGGCTACTGTCAGTACATCCCGCCAGGCATCCTGAAGAGCACCTGCTACATCGATGTGCGTTGGTTCCCGTTTGATGTCCAAAAATGTGACTTAAAATTCGGCTCCTGGACGCACAACGGCTGGCTGCTGGACCTCCAGATGCTGGACGTGGACACGTCTACATACATACCCAACGGGGAGTGGGACCTCGTGGGGGTGCCGGCCAAGCGTAACGAGCTCTACTACGACTGCTGTAAGGAGCCGTACCCCGATGTGACCTTCACAGTCACCATGCGCCGCAGGACGTTGTATTATGGCCTCAACCTGCTCATCCCCTGTGTGCTGATCTCTGGCTTGGCCCTGCTGGTCTTCTTGCTGCCCGCAGACTCTGGAGAGAAGATTTCTCTGGGCATCACTGTGCTGCTTTCGCTCACTGTCTTCATGCTTCTGGTAGCAGAGATCATGCCCGCCACGTCCGACTCTGTTCCACTCATCGCGCAGTACTTTGCCAGCACCATGATGATTGTGGGAATGTCTGTGGTGGTGACAGTGATCGTCCTGCAGTTTCACCATCACGACCCTCACGGAGGGAAGATGCCTAAATGGGTTCGTGTGATTTTGTTGAACTGGTGTGCCTGGTTCCTCCGAATGAAGCAACCCGGTGACGAGCGTAAGCGGCCGGGTTATAAAGCTCGCCACCTCTCCCAGCGTCACTCCAGCTCCAGCTCCATAGAGATGAGCGCCATGCCCAGCCTCAGCGTGCCCCTCGCTCAGACCTCTGGCCCATCGTGCCCAACAGGAACCTCCAACGGCTCCATGGGTTTTTACTTTAGCACCTACCACCCGACAGACAGCTCATCCTGTCCCCCTTCCAGTGACTCTGGGGTGGCACTTGGAGGACGCAACCACAGCTCCCCCAGCGAGGAGGCGGAGCCACCTGTCGGAGGCAGCGGCGGAAGCCTGGGAATGGGAGTGGGAAGGGTCAGCATCCCCCCACCAGAGATCATGTGCATCCTTGAGGAGGTGTCCTACATAGCCCAGAGGTTCCGGGACCAAGACGAGGCCGAGGCCATCTGCAGCGAGTGGAAGTTTGCGGCGGCGGTGGTGGACCGCCTCTGTCTGGTGGCCTTCTCCCTCTTCTCCATCATCTGCACCTTCACCATCCTCATGTCTGCGCCCAACTTCATAGAGGCCGTTTCA] consensusID : consensus_1033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1432 fasta sequence [GTTCCAGAGGAAGCTGTACCACGACCTGATGGTCAATTACAACCGTCTTGAAAGACCCGTCCTCAACGACTCCGCGCCAATCGTGGTGGAACTCGGCTTCACGCTGCGACAAATCATCGATGTGGATGAGAAGAACCAAGTGCTGATCACGAATGCCTGGCTGCAGCTGTACTGGACAGACATTTATCTGTCATGGAATCCAGAGAGCTTCCCCGGTGTTCAGAACCTGCGCTTCCCGTCCAGTCTCATATGGATGCCTGATATCCTCCTCTACAACAGTGCCGATGAGAGGTTTGACGCCACCTTCCACACCAACGTGCTGGTGAACGCTACCGGAGTCTGCCAGTACATCCCACCAGGCATCCTGAAGAGCACCTGTTATATTGACGTGCGCTGGTTTCCATTCGATGTGCAGAGGTGCGATCTGAAGTTTGGCTCCTGGACTCACAACGGCTGGCTGCTGGACCTACAAATGATGGACGTGGACATCTCTACCTACATACCCAACGGGGAGTGGGACCTTGTAGGTGTGCCAGCGAAGCGGAATGAGCTGTACTACGACTGCTGTAAAGAACCCTACCCCGATGTGACGTTCACTGTCACCATACGCCGCAGGACGCTTTATTATGGCCTCAACCTGCTCGTTCCCTGTGTGCTCATATCTGGTCTGGCGCTGCTGGTCTTCCTGCTTCCTGCTGACTCTGGGGAGAAGATTTCACTGGGCATCACCGTGCTGCTGTCACTAACAGTCTTCATGTTGCTGGTAGCAGAGATCATGCCTGCCACTTCAGACTCAGTTCCTCTAATTGCTCAGTACTTCGCTAGCACCATGATGATCGTTGGCCTGTCTGTGGTCGTCACGGTCCTTGTGCTTCAGTTCCACCACCACGATCCACATGGCGGGAAGATGCCTAAATGGGTTCGGGTTGTTCTACTCAACTGGTGCGCTTGGTTCCTCCGCATGAAGAAGCCGGGCGAGGATAAACAAGCTGTGGCTTCCAGTCGGCCTCCTGACCACAAACGCTCTCACCCCCCTCCCCACGCCAGTGCCAGCACCATCCAGGTGGCCACTATCCCGGGACAGGCTCCAGCCCCGACAGCCAATGGGAACATGAACCTGTACTTCAGCTACCACGCGCTGGCCTTGGATAACCCCACCCTCCCACCGGCCTCTGACCCAAGCGTCATCCGCTCGGAACAGACACGTTCGCTGCTGCTGGAGCAGCTCCCGGAAATTTCCCAGATCCTCGAGGAAGTGCAATACATAGCCAGGCGCTTCCGGGAGCAGGACGAGGGCGAGGCCATCTGCAGCGAGTGGAAGTTTGCGGCGGCGGTGGTGGATCGGCTGTGCCTGGTGGCCTTCTCCCTTTTCTCCATCATCTGCACCTTCACCATCCTCATGTCCGCTCCCAACTTTATCGAAGCCGTGTTC] [+] EMBL AY299465 [GTTCCAGAGGAAGCTGTACCACGACCTGATGGTCAATTACAACCGTCTTGAAAGACCCGTCCTCAACGACTCCGCGCCAATCGTGGTGGAACTCGGCTTCACGCTGCGACAAATCATCGATGTGGATGAGAAGAACCAAGTGCTGATCACGAATGCCTGGCTGCAGCTGTACTGGACAGACATTTATCTGTCATGGAATCCAGAGAGCTTCCCCGGTGTTCAGAACCTGCGCTTCCCGTCCAGTCTCATATGGATGCCTGATATCCTCCTCTACAACAGTGCCGATGAGAGGTTTGACGCCACCTTCCACACCAACGTGCTGGTGAACGCTACCGGAGTCTGCCAGTACATCCCACCAGGCATCCTGAAGAGCACCTGTTATATTGACGTGCGCTGGTTTCCATTCGATGTGCAGAGGTGCGATCTGAAGTTTGGCTCCTGGACTCACAACGGCTGGCTGCTGGACCTACAAATGATGGACGTGGACATCTCTACCTACATACCCAACGGGGAGTGGGACCTTGTAGGTGTGCCAGCGAAGCGGAATGAGCTGTACTACGACTGCTGTAAAGAACCCTACCCCGATGTGACGTTCACTGTCACCATACGCCGCAGGACGCTTTATTATGGCCTCAACCTGCTCGTTCCCTGTGTGCTCATATCTGGTCTGGCGCTGCTGGTCTTCCTGCTTCCTGCTGACTCTGGGGAGAAGATTTCACTGGGCATCACCGTGCTGCTGTCACTAACAGTCTTCATGTTGCTGGTAGCAGAGATCATGCCTGCCACTTCAGACTCAGTTCCTCTAATTGCTCAGTACTTCGCTAGCACCATGATGATCGTTGGCCTGTCTGTGGTCGTCACGGTCCTTGTGCTTCAGTTCCACCACCACGATCCACATGGCGGGAAGATGCCTAAATGGGTTCGGGTTGTTCTACTCAACTGGTGCGCTTGGTTCCTCCGCATGAAGAAGCCGGGCGAGGATAAACAAGCTGTGGCTTCCAGTCGGCCTCCTGACCACAAACGCTCTCACCCCCCTCCCCACGCCAGTGCCAGCACCATCCAGGTGGCCACTATCCCGGGACAGGCTCCAGCCCCGACAGCCAATGGGAACATGAACCTGTACTTCAGCTACCACGCGCTGGCCTTGGATAACCCCACCCTCCCACCGGCCTCTGACCCAAGCGTCATCCGCTCGGAACAGACACGTTCGCTGCTGCTGGAGCAGCTCCCGGAAATTTCCCAGATCCTCGAGGAAGTGCAATACATAGCCAGGCGCTTCCGGGAGCAGGACGAGGGCGAGGCCATCTGCAGCGAGTGGAAGTTTGCGGCGGCGGTGGTGGATCGGCTGTGCCTGGTGGCCTTCTCCCTTTTCTCCATCATCTGCACCTTCACCATCCTCATGTCCGCTCCCAACTTTATCGAAGCCGTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1033#0 ATACCAGAGGAAGCTCTACAAGGAACTGCTGGCTAACTACAACCGGCTGGAGAGGCCCGT 60 consensus_1033#1 GTTCCAGAGGAAGCTGTACCACGACCTGATGGTCAATTACAACCGTCTTGAAAGACCCGT 60 * ************ *** * ** *** *** ** ******** ** ** ** ***** consensus_1033#0 TTTCAACGACTCAGCCCCCATCCTGGTGGAGCTGGGCCTCACCCTGCTGCAGATCATCGA 120 consensus_1033#1 CCTCAACGACTCCGCGCCAATCGTGGTGGAACTCGGCTTCACGCTGCGACAAATCATCGA 120 ********** ** ** *** ******* ** *** **** **** ** ******** consensus_1033#0 CGTGGATGAGAAGAACCAAGTGTTGATGACCAATGCATGGCTGCAGTTGTATTGGACAGA 180 consensus_1033#1 TGTGGATGAGAAGAACCAAGTGCTGATCACGAATGCCTGGCTGCAGCTGTACTGGACAGA 180 ********************* **** ** ***** ********* **** ******** consensus_1033#0 CATCTACCTAACCTGGAATCCAGAAAGCTACCCTGGTGTCCAGAACCTCCGATTCCCTTC 240 consensus_1033#1 CATTTATCTGTCATGGAATCCAGAGAGCTTCCCCGGTGTTCAGAACCTGCGCTTCCCGTC 240 *** ** ** * *********** **** *** ***** ******** ** ***** ** consensus_1033#0 AGACCAGGTCTGGACCCCTGACATCCTGCTCTACAACAGTGCCGACGAGCGGTTTGACGC 300 consensus_1033#1 CAGTCTCATATGGATGCCTGATATCCTCCTCTACAACAGTGCCGATGAGAGGTTTGACGC 300 * * **** ***** ***** ***************** *** ********** consensus_1033#0 CACGTTCCACACTAACGTTCTGGTGAACGCGTCAGGCTACTGTCAGTACATCCCGCCAGG 360 consensus_1033#1 CACCTTCCACACCAACGTGCTGGTGAACGCTACCGGAGTCTGCCAGTACATCCCACCAGG 360 *** ******** ***** *********** * ** *** *********** ***** consensus_1033#0 CATCCTGAAGAGCACCTGCTACATCGATGTGCGTTGGTTCCCGTTTGATGTCCAAAAATG 420 consensus_1033#1 CATCCTGAAGAGCACCTGTTATATTGACGTGCGCTGGTTTCCATTCGATGTGCAGAGGTG 420 ****************** ** ** ** ***** ***** ** ** ***** ** * ** consensus_1033#0 TGACTTAAAATTCGGCTCCTGGACGCACAACGGCTGGCTGCTGGACCTCCAGATGCTGGA 480 consensus_1033#1 CGATCTGAAGTTTGGCTCCTGGACTCACAACGGCTGGCTGCTGGACCTACAAATGATGGA 480 ** * ** ** *********** *********************** ** *** **** consensus_1033#0 CGTGGACACGTCTACATACATACCCAACGGGGAGTGGGACCTCGTGGGGGTGCCGGCCAA 540 consensus_1033#1 CGTGGACATCTCTACCTACATACCCAACGGGGAGTGGGACCTTGTAGGTGTGCCAGCGAA 540 ******** ***** ************************** ** ** ***** ** ** consensus_1033#0 GCGTAACGAGCTCTACTACGACTGCTGTAAGGAGCCGTACCCCGATGTGACCTTCACAGT 600 consensus_1033#1 GCGGAATGAGCTGTACTACGACTGCTGTAAAGAACCCTACCCCGATGTGACGTTCACTGT 600 *** ** ***** ***************** ** ** ************** ***** ** consensus_1033#0 CACCATGCGCCGCAGGACGTTGTATTATGGCCTCAACCTGCTCATCCCCTGTGTGCTGAT 660 consensus_1033#1 CACCATACGCCGCAGGACGCTTTATTATGGCCTCAACCTGCTCGTTCCCTGTGTGCTCAT 660 ****** ************ * ********************* * *********** ** consensus_1033#0 CTCTGGCTTGGCCCTGCTGGTCTTCTTGCTGCCCGCAGACTCTGGAGAGAAGATTTCTCT 720 consensus_1033#1 ATCTGGTCTGGCGCTGCTGGTCTTCCTGCTTCCTGCTGACTCTGGGGAGAAGATTTCACT 720 ***** **** ************ **** ** ** ******** *********** ** consensus_1033#0 GGGCATCACTGTGCTGCTTTCGCTCACTGTCTTCATGCTTCTGGTAGCAGAGATCATGCC 780 consensus_1033#1 GGGCATCACCGTGCTGCTGTCACTAACAGTCTTCATGTTGCTGGTAGCAGAGATCATGCC 780 ********* ******** ** ** ** ********* * ******************** consensus_1033#0 CGCCACGTCCGACTCTGTTCCACTCATCGCGCAGTACTTTGCCAGCACCATGATGATTGT 840 consensus_1033#1 TGCCACTTCAGACTCAGTTCCTCTAATTGCTCAGTACTTCGCTAGCACCATGATGATCGT 840 ***** ** ***** ***** ** ** ** ******** ** ************** ** consensus_1033#0 GGGAATGTCTGTGGTGGTGACAGTGATCGTCCTGCAGTTTCACCATCACGACCCTCACGG 900 consensus_1033#1 TGGCCTGTCTGTGGTCGTCACGGTCCTTGTGCTTCAGTTCCACCACCACGATCCACATGG 900 ** ********** ** ** ** * ** ** ***** ***** ***** ** ** ** consensus_1033#0 AGGGAAGATGCCTAAATGGGTTCGTGTGATTTTGTTGAACTGGTGTGCCTGGTTCCTCCG 960 consensus_1033#1 CGGGAAGATGCCTAAATGGGTTCGGGTTGTTCTACTCAACTGGTGCGCTTGGTTCCTCCG 960 *********************** ** ** * * ******** ** *********** consensus_1033#0 AATGAAGCAACCCGGTGACGAGCGTAAGCG-GCCGGGTTATAAAGCTCGCCACCTCTCCC 1019 consensus_1033#1 CATGAAGAAGCCGGG---CGAGGATAAACAAGCTGTGGCTTCCAGTCGGCCTCCTGACCA 1017 ****** * ** ** **** *** * ** * * * ** *** *** ** consensus_1033#0 AGCGTCACTCCAGCTCCAGCTCCATAGAGATGAGCGCCATGCCCAGCCTCAGCGTGCCCC 1079 consensus_1033#1 CAAACGCTCTCACCCCCCTCCCCACG----CCAGTGCCAGCACCATC--CAGGTGGCCAC 1071 ** * ** * *** ** **** *** * *** *** * consensus_1033#0 TCGCTCAGACCTCTGGCCCATCGTGCCCAACAGGAACCTCCAACGGCTCCATGGGTTTTT 1139 consensus_1033#1 TATCCCGGGAC--AGGCTC--CAGCCCCGACAG------CCAATGGGAACATGAACCTGT 1121 * * * * * *** * * *** **** **** ** **** * * consensus_1033#0 ACTTTAGCACCTACCACCCGACAGAC--AGCTCATCCTGTCCCCCTTCCAGTGACTCTGG 1197 consensus_1033#1 ACTTCAGC---TACCACGCGCTGGCCTTGGATAACCCCACCCTCCCACCGGC--CTCTGA 1176 **** *** ****** ** * * * * * ** ** ** ** * ***** consensus_1033#0 GGTGGCACTTGGAGGACGCAACCACAGCTCCCCCAGCGAGGAGGCGGAGCCACCTGTCGG 1257 consensus_1033#1 ------------------------------CCCAAGCG-----------TCATCCGCTCG 1195 *** **** ** * * * consensus_1033#0 AGGCAGCGGCGGAAGCCTGGGAATGGGAGTGGGAAGGGTCAGCATCCCCCCACCAGAGAT 1317 consensus_1033#1 GAACAGACACGTTCGC-TGCTGCTGG--------------AGCAGCTCCC----GGAAAT 1236 *** ** ** ** *** **** * *** ** ** consensus_1033#0 CATGTGCATCCTTGAGGAGGTGTCCTACATAGCCCAGAGGTTCCGGGACCAAGACGAGGC 1377 consensus_1033#1 TTCCCAGATCCTCGAGGAAGTGCAATACATAGCCAGGCGCTTCCGGGAGCAGGACGAGGG 1296 ***** ***** *** ********* * * ******** ** ******* consensus_1033#0 CGAGGCCATCTGCAGCGAGTGGAAGTTTGCGGCGGCGGTGGTGGACCGCCTCTGTCTGGT 1437 consensus_1033#1 CGAGGCCATCTGCAGCGAGTGGAAGTTTGCGGCGGCGGTGGTGGATCGGCTGTGCCTGGT 1356 ********************************************* ** ** ** ***** consensus_1033#0 GGCCTTCTCCCTCTTCTCCATCATCTGCACCTTCACCATCCTCATGTCTGCGCCCAACTT 1497 consensus_1033#1 GGCCTTCTCCCTTTTCTCCATCATCTGCACCTTCACCATCCTCATGTCCGCTCCCAACTT 1416 ************ *********************************** ** ******** consensus_1033#0 CATAGAGGCCGTTTCA 1513 consensus_1033#1 TATCGAAGCCGTGTTC 1432 ** ** ***** * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |