These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [TGGAGAAGGAAAGAAACTTGTGATAGAAGATTCACTAGTTCCAGATACAGAAATAGATGATGAGAAAACAACAAATGACAATGAAAACTCTAGGAAAAAAGGAAAACATTTCATCAAGAAAAATCTGGTAGTTGAAGAAGCTGTTGTTGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCTTTCAGATGAAGCAAACATCAAGTTAGAGCATTCAGATGGTAGCAGCCGGCTCATTCTAACCAAGCTGCAGCGCAAGGA] [+] EMBL BU804528 [TGGAGAAGGAAAGAAACTTGTGATAGAAGATTCACTAGTTCCAGATACAGAAATAGATGATGAGAAAACAACAAATGACAATGAAAACTCTAGGAAAAAAGGAAAACATTTCATCAAGAAAAATCTGGTAGTTGAAGAAGCTGTTGTTGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCTTTCAGATGAAGCAAACATCAAGTTAGAGCATTCAGATGGTAGCAGCCGGCTCATTCTAACCAAGCTGCAGCGCAAGGA] consensusID : consensus_1038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [ATAGGCATGCATGCTGCTGGAAGAATCTATTACANTCAATAACACAGAAAACATAAAGATCAGGAGAAGACAGAATTGACCAGATTGTTGTTTGAAAGGAAGCGCAGAGCAGAGAAAACAGAGAACTGTGAGAAGAGTCTCTGATTAAACTCAAGAAAAAAACGCAATGTGGAAGAAGTCAAAGGTGACAGAGCAAACTGCATCTGGGCAGGCAGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCT] [+] EMBL BU805667 [ATAGGCATGCATGCTGCTGGAAGAATCTATTACANTCAATAACACAGAAAACATAAAGATCAGGAGAAGACAGAATTGACCAGATTGTTGTTTGAAAGGAAGCGCAGAGCAGAGAAAACAGAGAACTGTGAGAAGAGTCTCTGATTAAACTCAAGAAAAAAACGCAATGTGGAAGAAGTCAAAGGTGACAGAGCAAACTGCATCTGGGCAGGCAGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1038#0 --------------------------------------------TGGAGAAGGAAAGAAA 16 consensus_1038#1 ATAGGCATGCATGCTGCTGGAAGAATCTATTACANTCAATAACACAGAAAACATAAAGAT 60 ** ** ** * consensus_1038#0 CTTGTGATAGAAGA-TTCACTAGTTCCAGATACAGAAATAGATGATGAG--AAAACAACA 73 consensus_1038#1 CAGGAGAAGACAGAATTGACCAGATTGTTGTTTGAAAGGAAGCGCAGAGCAGAGAAAACA 120 * * ** *** ** ** ** * * ** * * *** * * **** consensus_1038#0 AATGACAATGAAAA----CTCTAGGAAAA---AAGGAAAACATTTCATCAAGAAAAATCT 126 consensus_1038#1 GAGAACTGTGAGAAGAGTCTCTGATTAAACTCAAGAAAAAAACGCAATGTGGAAGAAGTC 180 * ** *** ** **** *** *** **** * ** *** ** consensus_1038#0 ---GGTAGTTGAAGAAGCTGTTGTTG---------ACCCAGGGGTGCATTTTCATGCTGG 174 consensus_1038#1 AAAGGTGACAGAGCAAACTGCATCTGGGCAGGCAGACCCAGGGGTGCATTTTCATGCTGG 240 *** ** ** *** ** ************************* consensus_1038#0 ACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAA 234 consensus_1038#1 ACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAA 300 ************************************************************ consensus_1038#0 TGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTAT 294 consensus_1038#1 TGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTAT 360 ************************************************************ consensus_1038#0 CACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATA 354 consensus_1038#1 CACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATA 420 ************************************************************ consensus_1038#0 TGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGA 414 consensus_1038#1 TGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGA 480 ************************************************************ consensus_1038#0 AGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAA 474 consensus_1038#1 AGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAA 540 ************************************************************ consensus_1038#0 AAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCA 534 consensus_1038#1 AAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCA 600 ************************************************************ consensus_1038#0 GTGGTACCTTGATGGTGAAGAGCTTTCAGATGAAGCAAACATCAAGTTAGAGCATTCAGA 594 consensus_1038#1 GTGGTACCTTGATGGTGAAGAGCT------------------------------------ 624 ************************ consensus_1038#0 TGGTAGCAGCCGGCTCATTCTAACCAAGCTGCAGCGCAAGGA 636 consensus_1038#1 ------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |